Wall clock time and date at job start Tue Mar 31 2020 21:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36939 * 120.00058 * 2 1 4 4 H 1.08001 * 119.99978 * 203.48799 * 3 2 1 5 5 C 1.38811 * 120.00058 * 23.48460 * 3 2 1 6 6 N 1.31614 * 119.99905 * 15.10713 * 5 3 2 7 7 Si 1.86798 * 120.00085 * 195.10307 * 5 3 2 8 8 H 1.48498 * 109.47056 * 60.00272 * 7 5 3 9 9 H 1.48496 * 109.47304 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47035 * 300.00187 * 7 5 3 11 11 C 1.46498 * 120.00156 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.64494 * 178.31113 * 11 2 1 13 13 C 1.55154 * 110.72248 * 301.45377 * 11 2 1 14 14 C 1.54904 * 101.58667 * 154.03951 * 13 11 2 15 15 N 1.47419 * 104.83119 * 322.99185 * 14 13 11 16 16 C 1.34785 * 125.65015 * 204.08510 * 15 14 13 17 17 O 1.21278 * 120.00196 * 180.02562 * 16 15 14 18 18 C 1.50695 * 119.99730 * 0.02964 * 16 15 14 19 19 C 1.50701 * 109.47303 * 179.97438 * 18 16 15 20 20 C 1.36127 * 120.17068 * 265.00595 * 19 18 16 21 21 C 1.39333 * 120.98329 * 180.02562 * 20 19 18 22 22 C 1.36127 * 120.99452 * 359.97438 * 21 20 19 23 23 C 1.40500 * 119.65247 * 0.02562 * 22 21 20 24 24 C 1.40550 * 121.29494 * 179.97438 * 23 22 21 25 25 C 1.36086 * 119.65274 * 180.27262 * 24 23 22 26 26 C 1.39381 * 120.99509 * 359.49322 * 25 24 23 27 27 C 1.36094 * 120.98913 * 0.51084 * 26 25 24 28 28 C 1.40497 * 120.17409 * 85.01724 * 19 18 16 29 29 C 1.47023 * 108.70399 * 24.35532 * 15 14 13 30 30 H 1.09007 * 109.47233 * 275.21260 * 1 2 3 31 31 H 1.09001 * 109.47427 * 35.21045 * 1 2 3 32 32 H 1.09001 * 109.47410 * 155.21522 * 1 2 3 33 33 H 0.96997 * 120.00109 * 180.02562 * 6 5 3 34 34 H 1.09005 * 111.00645 * 35.96553 * 13 11 2 35 35 H 1.09002 * 111.03597 * 272.13551 * 13 11 2 36 36 H 1.08999 * 110.37364 * 204.15375 * 14 13 11 37 37 H 1.09001 * 110.46060 * 81.87515 * 14 13 11 38 38 H 1.09003 * 109.47246 * 59.99671 * 18 16 15 39 39 H 1.08999 * 109.47334 * 299.99668 * 18 16 15 40 40 H 1.08000 * 119.51243 * 0.02957 * 20 19 18 41 41 H 1.08008 * 119.50405 * 180.02562 * 21 20 19 42 42 H 1.07994 * 120.17459 * 180.02562 * 22 21 20 43 43 H 1.07992 * 120.17064 * 359.97438 * 24 23 22 44 44 H 1.07999 * 119.50053 * 179.72102 * 25 24 23 45 45 H 1.07995 * 119.50743 * 180.23693 * 26 25 24 46 46 H 1.08001 * 120.16667 * 179.72414 * 27 26 25 47 47 H 1.09005 * 109.88379 * 118.13112 * 29 15 14 48 48 H 1.09002 * 109.87964 * 239.29577 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1625 1.2246 -0.3728 5 6 1.5418 2.3383 0.4791 6 7 0.4427 2.2524 1.1979 7 14 2.2840 4.0109 0.1036 8 1 2.3288 4.2137 -1.3668 9 1 1.4520 5.0724 0.7250 10 1 3.6614 4.0762 0.6546 11 6 2.1975 -1.2687 0.0006 12 1 3.2726 -1.0917 -0.0296 13 6 1.8162 -2.1222 1.2389 14 6 2.1052 -3.5562 0.7293 15 7 1.6992 -3.5421 -0.6878 16 6 1.3359 -4.6195 -1.4117 17 8 1.0200 -4.4897 -2.5753 18 6 1.3221 -5.9852 -0.7749 19 6 0.8822 -7.0084 -1.7901 20 6 -0.4239 -7.3858 -1.8593 21 6 -0.8491 -8.3306 -2.7909 22 6 0.0290 -8.9034 -3.6591 23 6 1.3853 -8.5391 -3.6177 24 6 2.3216 -9.1090 -4.4974 25 6 3.6282 -8.7357 -4.4243 26 6 4.0527 -7.7870 -3.4956 27 6 3.1747 -7.2140 -2.6279 28 6 1.8179 -7.5780 -2.6698 29 6 1.7625 -2.1591 -1.1826 30 1 -0.3634 0.0934 1.0235 31 1 -0.3634 0.8396 -0.5925 32 1 -0.3634 -0.9330 -0.4308 33 1 0.0177 3.0576 1.5323 34 1 0.7618 -2.0010 1.4874 35 1 2.4473 -1.8763 2.0929 36 1 1.5139 -4.2831 1.2861 37 1 3.1673 -3.7850 0.8173 38 1 0.6288 -5.9870 0.0662 39 1 2.3233 -6.2312 -0.4210 40 1 -1.1413 -6.9462 -1.1821 41 1 -1.8913 -8.6122 -2.8251 42 1 -0.3151 -9.6341 -4.3761 43 1 2.0066 -9.8428 -5.2244 44 1 4.3463 -9.1785 -5.0985 45 1 5.0948 -7.5057 -3.4611 46 1 3.5189 -6.4835 -1.9108 47 1 2.4908 -2.0873 -1.9905 48 1 0.7802 -1.8470 -1.5375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972786438.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:36 Heat of formation + Delta-G solvation = 21.974797 kcal Electronic energy + Delta-G solvation = -28654.949514 eV Core-core repulsion = 24867.560552 eV Total energy + Delta-G solvation = -3787.388962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.67119 -40.75812 -38.91303 -37.37985 -36.52352 -34.73526 -33.46081 -31.56076 -31.18049 -30.98568 -29.66816 -28.21116 -28.01323 -25.21550 -24.20723 -23.87592 -23.77918 -22.06514 -20.86950 -20.10885 -18.95054 -18.43791 -18.13899 -17.88082 -17.52148 -17.11721 -16.53547 -16.28229 -15.80384 -15.32961 -15.21424 -15.04278 -14.88417 -14.49874 -14.39840 -14.36966 -14.28671 -14.02898 -13.60663 -13.57751 -13.20430 -12.97207 -12.86532 -12.82739 -12.74891 -12.54960 -12.39773 -12.27074 -12.19372 -12.09142 -11.83793 -11.80194 -11.65000 -11.46066 -11.06178 -10.68917 -10.62461 -9.63576 -9.49379 -8.82016 -8.74227 -7.85134 -5.34090 -0.38295 0.13173 1.10181 1.46719 1.49936 1.55795 1.62544 1.95277 2.18626 2.51045 3.18075 3.27679 3.52503 3.56845 3.67130 3.82971 3.88890 3.94141 4.02973 4.13279 4.15420 4.26946 4.30600 4.35394 4.36849 4.46794 4.47631 4.50192 4.60904 4.66152 4.67952 4.76286 4.89034 4.92813 5.00672 5.06599 5.15534 5.23682 5.27101 5.32126 5.34175 5.37315 5.40567 5.53407 5.63192 5.64017 5.65606 5.72677 5.94839 6.14591 6.30354 6.57812 7.11045 7.16556 7.82330 8.27693 9.18102 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.022138 B = 0.002312 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.517881 B =12107.757817 C =12569.239296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.602 5.602 3 C -0.269 4.269 4 H 0.073 0.927 5 C -0.048 4.048 6 N -0.934 5.934 7 Si 0.968 3.032 8 H -0.283 1.283 9 H -0.295 1.295 10 H -0.271 1.271 11 C 0.166 3.834 12 H 0.082 0.918 13 C -0.142 4.142 14 C 0.106 3.894 15 N -0.614 5.614 16 C 0.524 3.476 17 O -0.584 6.584 18 C -0.090 4.090 19 C -0.071 4.071 20 C -0.118 4.118 21 C -0.123 4.123 22 C -0.114 4.114 23 C -0.077 4.077 24 C -0.113 4.113 25 C -0.125 4.125 26 C -0.123 4.123 27 C -0.124 4.124 28 C -0.058 4.058 29 C 0.100 3.900 30 H 0.013 0.987 31 H 0.009 0.991 32 H 0.022 0.978 33 H 0.249 0.751 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.134 0.866 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.148 0.852 45 H 0.140 0.860 46 H 0.126 0.874 47 H 0.051 0.949 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.002 -26.712 -3.958 27.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.323 5.323 3 C -0.399 4.399 4 H 0.091 0.909 5 C -0.244 4.244 6 N -0.579 5.579 7 Si 0.796 3.204 8 H -0.210 1.210 9 H -0.221 1.221 10 H -0.197 1.197 11 C 0.057 3.943 12 H 0.100 0.900 13 C -0.182 4.182 14 C -0.016 4.016 15 N -0.347 5.347 16 C 0.314 3.686 17 O -0.464 6.464 18 C -0.129 4.129 19 C -0.071 4.071 20 C -0.136 4.136 21 C -0.141 4.141 22 C -0.132 4.132 23 C -0.077 4.077 24 C -0.131 4.131 25 C -0.143 4.143 26 C -0.141 4.141 27 C -0.142 4.142 28 C -0.058 4.058 29 C -0.026 4.026 30 H 0.031 0.969 31 H 0.028 0.972 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.106 0.894 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.152 0.848 41 H 0.164 0.836 42 H 0.168 0.832 43 H 0.168 0.832 44 H 0.166 0.834 45 H 0.158 0.842 46 H 0.144 0.856 47 H 0.069 0.931 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.716 -26.552 -4.529 27.191 hybrid contribution -0.079 1.683 -0.202 1.697 sum 3.638 -24.869 -4.731 25.575 Atomic orbital electron populations 1.20447 0.83133 0.95232 0.97792 1.44001 1.01784 1.01132 1.85415 1.19498 0.99041 0.86579 1.34799 0.90923 1.25754 0.98793 1.01796 0.98052 1.70208 1.22408 1.27875 1.37442 0.85341 0.77909 0.79566 0.77619 1.20958 1.22114 1.19675 1.21471 0.95994 0.84702 0.92110 0.90036 1.23210 1.01886 0.94185 0.98942 1.22560 1.01906 0.97783 0.79363 1.48600 1.66194 1.06383 1.13566 1.20824 0.76019 0.86062 0.85706 1.90704 1.50217 1.86632 1.18891 1.20697 1.06510 0.87630 0.98057 1.19337 0.94114 0.96723 0.96963 1.21021 0.95098 0.97800 0.99633 1.21127 1.01018 0.96572 0.95338 1.21341 0.91735 1.00493 0.99607 1.18440 0.95220 0.97356 0.96689 1.21348 0.93151 1.00130 0.98457 1.21193 0.96603 0.97592 0.98903 1.21180 1.00662 0.96765 0.95469 1.21198 0.92472 1.00047 1.00501 1.18152 0.94204 0.97045 0.96354 1.22329 1.00231 0.81804 0.98211 0.96854 0.97205 0.95957 0.94192 0.92442 0.89380 0.87710 0.88608 0.85207 0.85595 0.84845 0.83580 0.83188 0.83244 0.83440 0.84171 0.85650 0.93080 0.93902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.94 7.70 127.77 0.98 9.92 16 2 N -0.60 -29.59 2.93 -696.14 -2.04 -31.63 16 3 C -0.27 -14.52 9.59 84.03 0.81 -13.72 16 4 H 0.07 3.77 7.85 -2.91 -0.02 3.75 16 5 C -0.05 -2.67 5.06 84.86 0.43 -2.24 16 6 N -0.93 -54.59 10.86 21.65 0.24 -54.36 16 7 Si 0.97 44.68 29.58 68.60 2.03 46.71 16 8 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 9 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 C 0.17 6.36 3.42 46.18 0.16 6.52 16 12 H 0.08 3.05 7.93 -2.39 -0.02 3.03 16 13 C -0.14 -4.36 6.65 31.98 0.21 -4.15 16 14 C 0.11 2.31 6.69 86.85 0.58 2.89 16 15 N -0.61 -18.11 3.33 -811.78 -2.70 -20.81 16 16 C 0.52 15.81 7.84 87.65 0.69 16.49 16 17 O -0.58 -23.45 16.36 -3.02 -0.05 -23.50 16 18 C -0.09 -1.84 4.23 29.10 0.12 -1.72 16 19 C -0.07 -1.71 4.38 -19.80 -0.09 -1.79 16 20 C -0.12 -2.58 9.57 22.04 0.21 -2.37 16 21 C -0.12 -2.37 9.95 22.04 0.22 -2.15 16 22 C -0.11 -2.20 9.77 22.33 0.22 -1.98 16 23 C -0.08 -1.76 5.74 -21.30 -0.12 -1.88 16 24 C -0.11 -2.07 9.77 22.33 0.22 -1.85 16 25 C -0.13 -2.15 9.95 22.04 0.22 -1.93 16 26 C -0.12 -2.38 9.95 22.05 0.22 -2.16 16 27 C -0.12 -2.86 9.28 22.33 0.21 -2.65 16 28 C -0.06 -1.45 5.74 -21.30 -0.12 -1.57 16 29 C 0.10 3.68 6.41 86.73 0.56 4.24 16 30 H 0.01 0.71 7.32 -2.38 -0.02 0.69 16 31 H 0.01 0.51 7.43 -2.39 -0.02 0.49 16 32 H 0.02 1.00 6.30 -2.39 -0.02 0.98 16 33 H 0.25 14.21 8.31 -92.71 -0.77 13.43 16 34 H 0.06 1.99 7.28 -2.38 -0.02 1.97 16 35 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.10 1.63 7.48 -2.39 -0.02 1.61 16 37 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.13 1.94 7.75 -2.39 -0.02 1.92 16 39 H 0.13 1.95 6.70 -2.39 -0.02 1.93 16 40 H 0.13 2.45 8.05 -2.91 -0.02 2.43 16 41 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 42 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 43 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 44 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 45 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 46 H 0.13 2.62 6.49 -2.91 -0.02 2.60 16 47 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 48 H 0.04 1.83 6.15 -2.39 -0.01 1.81 16 Total: -1.00 -74.27 385.82 4.15 -70.12 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.96 Total: 15.59 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: 5.72 Total: -2.10 kcal Atomic # 7 Polarization: -102.30 SS G_CDS: -4.51 Total: -106.81 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.05 Total: -23.50 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -74.27 4.15 -70.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972786438.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.095 kcal (2) G-P(sol) polarization free energy of solvation -74.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds