Wall clock time and date at job start Tue Mar 31 2020 21:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36934 * 120.00166 * 2 1 4 4 H 1.08003 * 120.00002 * 203.41573 * 3 2 1 5 5 C 1.38808 * 120.00190 * 23.42235 * 3 2 1 6 6 N 1.31623 * 120.00217 * 14.49559 * 5 3 2 7 7 Si 1.86800 * 120.00106 * 194.50088 * 5 3 2 8 8 H 1.48494 * 109.47151 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47338 * 120.00131 * 7 5 3 10 10 H 1.48504 * 109.47246 * 239.99873 * 7 5 3 11 11 C 1.46501 * 119.99870 * 179.97438 * 2 1 3 12 12 H 1.08995 * 110.64282 * 179.30385 * 11 2 1 13 13 C 1.55161 * 110.71863 * 56.15572 * 11 2 1 14 14 C 1.54909 * 101.58259 * 206.13577 * 13 11 2 15 15 N 1.47429 * 104.83346 * 37.00851 * 14 13 11 16 16 C 1.34775 * 125.64992 * 155.83122 * 15 14 13 17 17 O 1.21279 * 120.00196 * 180.02562 * 16 15 14 18 18 C 1.50700 * 119.99505 * 0.03482 * 16 15 14 19 19 C 1.50703 * 109.46897 * 179.97438 * 18 16 15 20 20 C 1.36124 * 120.17702 * 264.72510 * 19 18 16 21 21 C 1.39337 * 120.99169 * 179.66649 * 20 19 18 22 22 C 1.36124 * 120.98855 * 0.63613 * 21 20 19 23 23 C 1.40498 * 119.65075 * 359.67765 * 22 21 20 24 24 C 1.40554 * 121.28684 * 179.97438 * 23 22 21 25 25 C 1.36082 * 119.65618 * 180.02562 * 24 23 22 26 26 C 1.39381 * 120.99003 * 0.02562 * 25 24 23 27 27 C 1.36084 * 120.99837 * 0.02562 * 26 25 24 28 28 C 1.40505 * 120.17389 * 84.99545 * 19 18 16 29 29 C 1.47321 * 108.73393 * 335.71880 * 15 14 13 30 30 H 1.09004 * 109.47352 * 275.18959 * 1 2 3 31 31 H 1.09004 * 109.46722 * 35.18343 * 1 2 3 32 32 H 1.09002 * 109.47485 * 155.18704 * 1 2 3 33 33 H 0.97000 * 120.00147 * 179.97438 * 6 5 3 34 34 H 1.08994 * 111.00577 * 324.21090 * 13 11 2 35 35 H 1.09003 * 111.00063 * 88.02676 * 13 11 2 36 36 H 1.08994 * 110.36847 * 155.84633 * 14 13 11 37 37 H 1.08999 * 110.36631 * 278.06833 * 14 13 11 38 38 H 1.09001 * 109.47133 * 299.98955 * 18 16 15 39 39 H 1.08996 * 109.47342 * 59.99892 * 18 16 15 40 40 H 1.08001 * 119.50016 * 359.97438 * 20 19 18 41 41 H 1.07998 * 119.50169 * 180.31416 * 21 20 19 42 42 H 1.07990 * 120.17462 * 179.69818 * 22 21 20 43 43 H 1.08002 * 120.17139 * 0.02562 * 24 23 22 44 44 H 1.08000 * 119.50346 * 180.02562 * 25 24 23 45 45 H 1.08007 * 119.50029 * 179.97438 * 26 25 24 46 46 H 1.08001 * 120.17664 * 179.97438 * 27 26 25 47 47 H 1.09005 * 110.06239 * 241.86546 * 29 15 14 48 48 H 1.09005 * 109.85135 * 120.60734 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1630 1.2243 -0.3717 5 6 1.5415 2.3385 0.4778 6 7 0.4350 2.2538 1.1856 7 14 2.2933 4.0099 0.1164 8 1 3.5265 3.8336 -0.6918 9 1 1.3195 4.8377 -0.6397 10 1 2.6319 4.6871 1.3939 11 6 2.1975 -1.2688 0.0006 12 1 3.2728 -1.0916 -0.0119 13 6 1.7719 -2.1488 -1.2044 14 6 2.0754 -3.5718 -0.6728 15 7 1.7185 -3.5247 0.7569 16 6 1.3765 -4.5842 1.5165 17 8 1.1004 -4.4273 2.6870 18 6 1.3375 -5.9638 0.9114 19 6 0.9302 -6.9626 1.9638 20 6 1.8779 -7.6531 2.6551 21 6 1.5205 -8.5755 3.6365 22 6 0.2130 -8.8222 3.9235 23 6 -0.7937 -8.1333 3.2263 24 6 -2.1544 -8.3615 3.4945 25 6 -3.1020 -7.6761 2.7988 26 6 -2.7444 -6.7490 1.8214 27 6 -1.4373 -6.5026 1.5339 28 6 -0.4300 -7.1900 2.2327 29 6 1.7998 -2.1282 1.2191 30 1 -0.3634 0.0930 1.0235 31 1 -0.3633 0.8400 -0.5922 32 1 -0.3634 -0.9328 -0.4313 33 1 0.0102 3.0593 1.5198 34 1 0.7099 -2.0302 -1.4191 35 1 2.3740 -1.9234 -2.0847 36 1 1.4637 -4.3093 -1.1923 37 1 3.1334 -3.8043 -0.7937 38 1 0.6162 -5.9819 0.0944 39 1 2.3255 -6.2212 0.5297 40 1 2.9226 -7.4799 2.4431 41 1 2.2924 -9.1063 4.1738 42 1 -0.0492 -9.5433 4.6834 43 1 -2.4464 -9.0772 4.2488 44 1 -4.1468 -7.8531 3.0072 45 1 -3.5164 -6.2187 1.2835 46 1 -1.1752 -5.7817 0.7736 47 1 2.5549 -2.0362 1.9999 48 1 0.8299 -1.8069 1.5988 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972786439.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:42 Heat of formation + Delta-G solvation = 39.294415 kcal Electronic energy + Delta-G solvation = -28789.012165 eV Core-core repulsion = 25002.374238 eV Total energy + Delta-G solvation = -3786.637927 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.73749 -39.52569 -37.48623 -36.53367 -34.77525 -33.83181 -31.70351 -30.41576 -30.32071 -29.70292 -28.41706 -27.01984 -26.04225 -23.70599 -23.24929 -23.06189 -22.37049 -21.11198 -19.26629 -18.90908 -17.63278 -17.20205 -16.96637 -16.83358 -16.32837 -15.82917 -15.18510 -14.93202 -14.56985 -14.27837 -14.05597 -13.65918 -13.58234 -13.43706 -13.29825 -13.24318 -12.83009 -12.68922 -12.46006 -12.19605 -11.99380 -11.97432 -11.76059 -11.52958 -11.38206 -11.01941 -10.95247 -10.85771 -10.80924 -10.58019 -10.49678 -10.27745 -9.99827 -9.89522 -9.84309 -9.53067 -8.66286 -8.59945 -8.28768 -7.92048 -6.82469 -5.77894 -3.26129 0.44326 0.96593 1.95861 2.86526 2.89546 3.29051 3.35629 3.42813 3.44678 4.05045 4.37812 4.44744 4.64118 4.70929 4.77649 4.81363 4.91544 4.98726 5.04193 5.09508 5.24823 5.27864 5.29573 5.31627 5.40737 5.41500 5.50566 5.59134 5.65550 5.79802 5.87535 5.88888 5.98952 6.02480 6.13201 6.16232 6.32829 6.34871 6.36084 6.45189 6.52853 6.56217 6.66331 6.74877 6.80756 6.85908 6.93784 7.29380 7.69340 7.76202 7.83176 8.32917 8.43574 9.16334 9.79125 10.28390 11.26227 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.019137 B = 0.002473 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.819830 B =11320.740367 C =11870.595698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.585 5.585 3 C -0.262 4.262 4 H 0.071 0.929 5 C 0.005 3.995 6 N -0.901 5.901 7 Si 0.906 3.094 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.172 3.828 12 H 0.078 0.922 13 C -0.153 4.153 14 C 0.100 3.900 15 N -0.615 5.615 16 C 0.523 3.477 17 O -0.533 6.533 18 C -0.102 4.102 19 C -0.046 4.046 20 C -0.108 4.108 21 C -0.112 4.112 22 C -0.111 4.111 23 C -0.051 4.051 24 C -0.109 4.109 25 C -0.117 4.117 26 C -0.118 4.118 27 C -0.100 4.100 28 C -0.034 4.034 29 C 0.088 3.912 30 H 0.033 0.967 31 H 0.041 0.959 32 H 0.003 0.997 33 H 0.253 0.747 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.059 0.941 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.249 -23.706 -1.795 23.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.305 5.305 3 C -0.392 4.392 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.545 5.545 7 Si 0.736 3.264 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.193 4.193 14 C -0.023 4.023 15 N -0.350 5.350 16 C 0.311 3.689 17 O -0.410 6.410 18 C -0.141 4.141 19 C -0.046 4.046 20 C -0.126 4.126 21 C -0.130 4.130 22 C -0.129 4.129 23 C -0.051 4.051 24 C -0.127 4.127 25 C -0.135 4.135 26 C -0.136 4.136 27 C -0.118 4.118 28 C -0.034 4.034 29 C -0.036 4.036 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.021 0.979 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.077 0.923 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.539 -23.487 -1.043 23.560 hybrid contribution 0.313 1.059 -0.036 1.105 sum -1.226 -22.427 -1.079 22.487 Atomic orbital electron populations 1.20793 0.82540 0.95566 0.99656 1.43927 1.01841 0.99931 1.84831 1.19242 0.98907 0.85222 1.35802 0.91164 1.25073 0.98022 0.98708 0.97616 1.70088 1.20546 1.27379 1.36520 0.86174 0.78496 0.84180 0.77595 1.20239 1.21561 1.21690 1.21366 0.96392 0.85962 0.90102 0.90395 1.23348 1.02800 0.93152 1.00032 1.22328 0.99765 0.99109 0.81118 1.48669 1.67274 1.07978 1.11064 1.20043 0.77539 0.85071 0.86280 1.90738 1.48555 1.85482 1.16212 1.20693 1.04182 0.91388 0.97881 1.19136 0.92393 0.95928 0.97166 1.20676 0.99147 0.96625 0.96158 1.20775 0.96340 0.98195 0.97665 1.20972 0.92640 0.99743 0.99535 1.18045 0.93827 0.96836 0.96375 1.20986 0.91754 1.00130 0.99855 1.20837 0.99506 0.96699 0.96448 1.20853 0.96353 0.98216 0.98170 1.21044 0.92702 0.98555 0.99452 1.17854 0.92922 0.96405 0.96249 1.22954 1.02364 0.78786 0.99494 0.94920 0.94014 0.97881 0.93643 0.90489 0.90398 0.91407 0.91590 0.88046 0.87951 0.86072 0.85979 0.85741 0.85734 0.86085 0.85964 0.85890 0.92259 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.82 7.70 59.85 0.46 4.28 16 2 N -0.58 -14.11 2.93 -171.38 -0.50 -14.61 16 3 C -0.26 -6.99 9.59 -15.06 -0.14 -7.13 16 4 H 0.07 1.82 7.85 -52.48 -0.41 1.40 16 5 C 0.01 0.14 5.07 -17.43 -0.09 0.05 16 6 N -0.90 -26.09 10.82 55.49 0.60 -25.49 16 7 Si 0.91 21.49 29.58 -169.99 -5.03 16.46 16 8 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 9 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 C 0.17 3.33 3.43 -66.09 -0.23 3.11 16 12 H 0.08 1.49 7.93 -51.93 -0.41 1.08 16 13 C -0.15 -2.31 6.60 -24.58 -0.16 -2.47 16 14 C 0.10 1.23 6.69 -2.53 -0.02 1.22 16 15 N -0.61 -9.79 3.33 -170.27 -0.57 -10.36 16 16 C 0.52 8.46 7.84 -10.99 -0.09 8.37 16 17 O -0.53 -11.04 16.36 5.56 0.09 -10.95 16 18 C -0.10 -1.18 4.24 -29.03 -0.12 -1.30 16 19 C -0.05 -0.59 4.38 -104.53 -0.46 -1.05 16 20 C -0.11 -1.25 9.57 -39.93 -0.38 -1.64 16 21 C -0.11 -1.17 9.95 -39.93 -0.40 -1.57 16 22 C -0.11 -1.19 9.77 -39.49 -0.39 -1.58 16 23 C -0.05 -0.63 5.74 -106.83 -0.61 -1.25 16 24 C -0.11 -1.16 9.77 -39.48 -0.39 -1.55 16 25 C -0.12 -1.21 9.95 -39.93 -0.40 -1.61 16 26 C -0.12 -1.34 9.95 -39.93 -0.40 -1.73 16 27 C -0.10 -1.28 9.28 -39.48 -0.37 -1.64 16 28 C -0.03 -0.46 5.74 -106.83 -0.61 -1.08 16 29 C 0.09 1.72 6.53 -2.90 -0.02 1.70 16 30 H 0.03 0.87 7.25 -51.93 -0.38 0.50 16 31 H 0.04 1.07 7.41 -51.93 -0.38 0.69 16 32 H 0.00 0.06 6.20 -51.93 -0.32 -0.26 16 33 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.08 1.24 6.21 -51.93 -0.32 0.92 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.07 0.66 7.47 -51.93 -0.39 0.27 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.10 0.99 6.41 -51.93 -0.33 0.65 16 39 H 0.10 0.92 8.04 -51.93 -0.42 0.50 16 40 H 0.12 1.17 8.04 -52.49 -0.42 0.75 16 41 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 44 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 45 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 46 H 0.12 1.48 6.48 -52.49 -0.34 1.14 16 47 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.07 1.64 7.01 -51.93 -0.36 1.28 16 LS Contribution 385.47 15.07 5.81 5.81 Total: -1.00 -33.35 385.47 -11.41 -44.76 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -7.01 Total: 1.25 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -4.80 Total: -6.86 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: -0.47 Total: -50.46 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.35 -11.41 -44.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972786439.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.053 kcal (2) G-P(sol) polarization free energy of solvation -33.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds