Wall clock time and date at job start Tue Mar 31 2020 21:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36934 * 120.00166 * 2 1 4 4 H 1.08003 * 120.00002 * 203.41573 * 3 2 1 5 5 C 1.38808 * 120.00190 * 23.42235 * 3 2 1 6 6 N 1.31623 * 120.00217 * 14.49559 * 5 3 2 7 7 Si 1.86800 * 120.00106 * 194.50088 * 5 3 2 8 8 H 1.48494 * 109.47151 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47338 * 120.00131 * 7 5 3 10 10 H 1.48504 * 109.47246 * 239.99873 * 7 5 3 11 11 C 1.46501 * 119.99870 * 179.97438 * 2 1 3 12 12 H 1.08995 * 110.64282 * 179.30385 * 11 2 1 13 13 C 1.55161 * 110.71863 * 56.15572 * 11 2 1 14 14 C 1.54909 * 101.58259 * 206.13577 * 13 11 2 15 15 N 1.47429 * 104.83346 * 37.00851 * 14 13 11 16 16 C 1.34775 * 125.64992 * 155.83122 * 15 14 13 17 17 O 1.21279 * 120.00196 * 180.02562 * 16 15 14 18 18 C 1.50700 * 119.99505 * 0.03482 * 16 15 14 19 19 C 1.50703 * 109.46897 * 179.97438 * 18 16 15 20 20 C 1.36124 * 120.17702 * 264.72510 * 19 18 16 21 21 C 1.39337 * 120.99169 * 179.66649 * 20 19 18 22 22 C 1.36124 * 120.98855 * 0.63613 * 21 20 19 23 23 C 1.40498 * 119.65075 * 359.67765 * 22 21 20 24 24 C 1.40554 * 121.28684 * 179.97438 * 23 22 21 25 25 C 1.36082 * 119.65618 * 180.02562 * 24 23 22 26 26 C 1.39381 * 120.99003 * 0.02562 * 25 24 23 27 27 C 1.36084 * 120.99837 * 0.02562 * 26 25 24 28 28 C 1.40505 * 120.17389 * 84.99545 * 19 18 16 29 29 C 1.47321 * 108.73393 * 335.71880 * 15 14 13 30 30 H 1.09004 * 109.47352 * 275.18959 * 1 2 3 31 31 H 1.09004 * 109.46722 * 35.18343 * 1 2 3 32 32 H 1.09002 * 109.47485 * 155.18704 * 1 2 3 33 33 H 0.97000 * 120.00147 * 179.97438 * 6 5 3 34 34 H 1.08994 * 111.00577 * 324.21090 * 13 11 2 35 35 H 1.09003 * 111.00063 * 88.02676 * 13 11 2 36 36 H 1.08994 * 110.36847 * 155.84633 * 14 13 11 37 37 H 1.08999 * 110.36631 * 278.06833 * 14 13 11 38 38 H 1.09001 * 109.47133 * 299.98955 * 18 16 15 39 39 H 1.08996 * 109.47342 * 59.99892 * 18 16 15 40 40 H 1.08001 * 119.50016 * 359.97438 * 20 19 18 41 41 H 1.07998 * 119.50169 * 180.31416 * 21 20 19 42 42 H 1.07990 * 120.17462 * 179.69818 * 22 21 20 43 43 H 1.08002 * 120.17139 * 0.02562 * 24 23 22 44 44 H 1.08000 * 119.50346 * 180.02562 * 25 24 23 45 45 H 1.08007 * 119.50029 * 179.97438 * 26 25 24 46 46 H 1.08001 * 120.17664 * 179.97438 * 27 26 25 47 47 H 1.09005 * 110.06239 * 241.86546 * 29 15 14 48 48 H 1.09005 * 109.85135 * 120.60734 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1630 1.2243 -0.3717 5 6 1.5415 2.3385 0.4778 6 7 0.4350 2.2538 1.1856 7 14 2.2933 4.0099 0.1164 8 1 3.5265 3.8336 -0.6918 9 1 1.3195 4.8377 -0.6397 10 1 2.6319 4.6871 1.3939 11 6 2.1975 -1.2688 0.0006 12 1 3.2728 -1.0916 -0.0119 13 6 1.7719 -2.1488 -1.2044 14 6 2.0754 -3.5718 -0.6728 15 7 1.7185 -3.5247 0.7569 16 6 1.3765 -4.5842 1.5165 17 8 1.1004 -4.4273 2.6870 18 6 1.3375 -5.9638 0.9114 19 6 0.9302 -6.9626 1.9638 20 6 1.8779 -7.6531 2.6551 21 6 1.5205 -8.5755 3.6365 22 6 0.2130 -8.8222 3.9235 23 6 -0.7937 -8.1333 3.2263 24 6 -2.1544 -8.3615 3.4945 25 6 -3.1020 -7.6761 2.7988 26 6 -2.7444 -6.7490 1.8214 27 6 -1.4373 -6.5026 1.5339 28 6 -0.4300 -7.1900 2.2327 29 6 1.7998 -2.1282 1.2191 30 1 -0.3634 0.0930 1.0235 31 1 -0.3633 0.8400 -0.5922 32 1 -0.3634 -0.9328 -0.4313 33 1 0.0102 3.0593 1.5198 34 1 0.7099 -2.0302 -1.4191 35 1 2.3740 -1.9234 -2.0847 36 1 1.4637 -4.3093 -1.1923 37 1 3.1334 -3.8043 -0.7937 38 1 0.6162 -5.9819 0.0944 39 1 2.3255 -6.2212 0.5297 40 1 2.9226 -7.4799 2.4431 41 1 2.2924 -9.1063 4.1738 42 1 -0.0492 -9.5433 4.6834 43 1 -2.4464 -9.0772 4.2488 44 1 -4.1468 -7.8531 3.0072 45 1 -3.5164 -6.2187 1.2835 46 1 -1.1752 -5.7817 0.7736 47 1 2.5549 -2.0362 1.9999 48 1 0.8299 -1.8069 1.5988 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972786439.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:41 Heat of formation + Delta-G solvation = 21.295531 kcal Electronic energy + Delta-G solvation = -28789.792655 eV Core-core repulsion = 25002.374238 eV Total energy + Delta-G solvation = -3787.418417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.66731 -40.74026 -38.91431 -37.38700 -36.51791 -34.73816 -33.47655 -31.54609 -31.18663 -30.95632 -29.68724 -28.22419 -28.00731 -25.19267 -24.22001 -23.88460 -23.81218 -22.06006 -20.85982 -20.09408 -18.96561 -18.44019 -18.13078 -17.93195 -17.35795 -17.16225 -16.61455 -16.34346 -15.75371 -15.37402 -15.19145 -15.00651 -14.87794 -14.56691 -14.40313 -14.33415 -14.16420 -14.05283 -13.63234 -13.53026 -13.30051 -13.11788 -12.85189 -12.77761 -12.75948 -12.52010 -12.41504 -12.23594 -12.19582 -12.07715 -11.81920 -11.79793 -11.66047 -11.40511 -11.05837 -10.67826 -10.65702 -9.63891 -9.50085 -8.83091 -8.74908 -7.84980 -5.35816 -0.39019 0.12423 1.09226 1.46462 1.47637 1.58411 1.63416 1.95624 2.18480 2.50661 3.17422 3.27341 3.52051 3.56829 3.69965 3.83401 3.87169 3.94288 4.01934 4.12484 4.15806 4.27470 4.31669 4.34593 4.38400 4.46246 4.48151 4.49392 4.61603 4.65299 4.69237 4.78704 4.87280 4.91594 5.03463 5.06680 5.18022 5.21886 5.24863 5.30781 5.33000 5.36563 5.44182 5.52468 5.62943 5.63945 5.66562 5.71940 5.94196 6.13930 6.29989 6.59878 7.10537 7.17912 7.82147 8.27377 9.17919 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.019137 B = 0.002473 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.819830 B =11320.740367 C =11870.595698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.601 5.601 3 C -0.265 4.265 4 H 0.080 0.920 5 C -0.055 4.055 6 N -0.940 5.940 7 Si 0.971 3.029 8 H -0.260 1.260 9 H -0.292 1.292 10 H -0.297 1.297 11 C 0.165 3.835 12 H 0.082 0.918 13 C -0.140 4.140 14 C 0.104 3.896 15 N -0.614 5.614 16 C 0.520 3.480 17 O -0.588 6.588 18 C -0.088 4.088 19 C -0.072 4.072 20 C -0.115 4.115 21 C -0.122 4.122 22 C -0.114 4.114 23 C -0.077 4.077 24 C -0.112 4.112 25 C -0.126 4.126 26 C -0.125 4.125 27 C -0.125 4.125 28 C -0.059 4.059 29 C 0.100 3.900 30 H -0.006 1.006 31 H 0.017 0.983 32 H 0.033 0.967 33 H 0.247 0.753 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.122 0.878 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.147 0.853 45 H 0.137 0.863 46 H 0.122 0.878 47 H 0.039 0.961 48 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.018 -26.237 -3.401 26.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.322 5.322 3 C -0.395 4.395 4 H 0.097 0.903 5 C -0.250 4.250 6 N -0.586 5.586 7 Si 0.799 3.201 8 H -0.184 1.184 9 H -0.218 1.218 10 H -0.224 1.224 11 C 0.056 3.944 12 H 0.100 0.900 13 C -0.180 4.180 14 C -0.018 4.018 15 N -0.348 5.348 16 C 0.311 3.689 17 O -0.469 6.469 18 C -0.127 4.127 19 C -0.073 4.073 20 C -0.133 4.133 21 C -0.139 4.139 22 C -0.132 4.132 23 C -0.077 4.077 24 C -0.130 4.130 25 C -0.144 4.144 26 C -0.143 4.143 27 C -0.143 4.143 28 C -0.059 4.059 29 C -0.026 4.026 30 H 0.012 0.988 31 H 0.036 0.964 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.115 0.885 38 H 0.140 0.860 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.167 0.833 42 H 0.169 0.831 43 H 0.169 0.831 44 H 0.165 0.835 45 H 0.155 0.845 46 H 0.140 0.860 47 H 0.057 0.943 48 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.233 -26.069 -2.706 26.210 hybrid contribution -0.077 1.743 0.526 1.822 sum -0.310 -24.326 -2.180 24.426 Atomic orbital electron populations 1.20434 0.83100 0.95935 0.97077 1.44128 1.01850 1.01174 1.85075 1.19652 0.99176 0.86282 1.34358 0.90275 1.25890 0.98787 1.02266 0.98082 1.70274 1.22283 1.27692 1.38339 0.85142 0.78129 0.79764 0.77018 1.18423 1.21846 1.22403 1.21592 0.96194 0.84654 0.91963 0.89958 1.23222 1.02439 0.93633 0.98685 1.22606 1.02493 0.98152 0.78530 1.48727 1.67132 1.06229 1.12747 1.20930 0.75867 0.86516 0.85632 1.90710 1.50841 1.86428 1.18895 1.20696 1.06660 0.87543 0.97779 1.19357 0.92545 0.96962 0.98420 1.21036 0.99886 0.96410 0.95937 1.21149 0.97111 0.98116 0.97570 1.21343 0.92525 0.99734 0.99603 1.18448 0.95203 0.97311 0.96785 1.21360 0.91183 1.00332 1.00130 1.21181 1.00954 0.96247 0.96001 1.21172 0.96335 0.98370 0.98436 1.21182 0.93458 0.99370 1.00323 1.18171 0.93589 0.97117 0.96989 1.22486 0.99335 0.81652 0.99114 0.98765 0.96402 0.94878 0.94353 0.91566 0.88020 0.87533 0.88452 0.85965 0.84542 0.84364 0.83327 0.83140 0.83093 0.83481 0.84502 0.86015 0.94251 0.95103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.98 7.70 127.77 0.98 9.96 16 2 N -0.60 -29.46 2.93 -696.13 -2.04 -31.50 16 3 C -0.26 -14.22 9.59 84.03 0.81 -13.41 16 4 H 0.08 4.03 7.85 -2.91 -0.02 4.01 16 5 C -0.06 -3.08 5.07 84.86 0.43 -2.65 16 6 N -0.94 -56.70 10.82 21.65 0.23 -56.47 16 7 Si 0.97 44.88 29.58 68.60 2.03 46.91 16 8 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 9 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 10 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 11 C 0.16 6.28 3.43 46.18 0.16 6.44 16 12 H 0.08 3.06 7.93 -2.39 -0.02 3.04 16 13 C -0.14 -3.83 6.60 31.99 0.21 -3.62 16 14 C 0.10 2.14 6.69 86.85 0.58 2.72 16 15 N -0.61 -18.80 3.33 -811.02 -2.70 -21.51 16 16 C 0.52 16.47 7.84 87.66 0.69 17.15 16 17 O -0.59 -25.12 16.36 -3.03 -0.05 -25.16 16 18 C -0.09 -1.84 4.24 29.10 0.12 -1.71 16 19 C -0.07 -1.79 4.38 -19.80 -0.09 -1.88 16 20 C -0.11 -2.48 9.57 22.04 0.21 -2.27 16 21 C -0.12 -2.34 9.95 22.04 0.22 -2.12 16 22 C -0.11 -2.27 9.77 22.33 0.22 -2.05 16 23 C -0.08 -1.87 5.74 -21.30 -0.12 -1.99 16 24 C -0.11 -2.24 9.77 22.33 0.22 -2.02 16 25 C -0.13 -2.46 9.95 22.04 0.22 -2.24 16 26 C -0.13 -2.79 9.95 22.04 0.22 -2.57 16 27 C -0.13 -3.22 9.28 22.33 0.21 -3.01 16 28 C -0.06 -1.57 5.74 -21.30 -0.12 -1.69 16 29 C 0.10 4.00 6.53 86.67 0.57 4.56 16 30 H -0.01 -0.34 7.25 -2.38 -0.02 -0.36 16 31 H 0.02 0.94 7.41 -2.38 -0.02 0.92 16 32 H 0.03 1.41 6.20 -2.39 -0.01 1.40 16 33 H 0.25 14.53 8.31 -92.71 -0.77 13.75 16 34 H 0.07 1.98 6.21 -2.39 -0.01 1.96 16 35 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.11 1.49 7.47 -2.39 -0.02 1.47 16 37 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.12 2.03 6.41 -2.39 -0.02 2.02 16 39 H 0.14 1.89 8.04 -2.39 -0.02 1.87 16 40 H 0.14 2.36 8.04 -2.91 -0.02 2.33 16 41 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 42 H 0.15 2.03 8.06 -2.92 -0.02 2.01 16 43 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 44 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 45 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 46 H 0.12 2.95 6.48 -2.91 -0.02 2.93 16 47 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 48 H 0.03 1.48 7.01 -2.38 -0.02 1.46 16 Total: -1.00 -78.11 385.47 4.16 -73.95 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.96 Total: 16.20 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 5.73 Total: -2.42 kcal Atomic # 7 Polarization: -104.97 SS G_CDS: -4.51 Total: -109.47 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.05 Total: -25.16 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -78.11 4.16 -73.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972786439.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.243 kcal (2) G-P(sol) polarization free energy of solvation -78.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds