Wall clock time and date at job start Tue Mar 31 2020 21:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36936 * 119.99767 * 2 1 4 4 H 1.07997 * 119.99887 * 160.48808 * 3 2 1 5 5 C 1.38816 * 119.99829 * 340.21392 * 3 2 1 6 6 N 1.31612 * 119.99957 * 347.26909 * 5 3 2 7 7 Si 1.86803 * 119.99908 * 167.27276 * 5 3 2 8 8 H 1.48502 * 109.47104 * 89.99690 * 7 5 3 9 9 H 1.48498 * 109.46981 * 209.99931 * 7 5 3 10 10 H 1.48502 * 109.46859 * 329.99996 * 7 5 3 11 11 C 1.46495 * 120.00308 * 179.97438 * 2 1 3 12 12 H 1.09005 * 110.88601 * 179.30049 * 11 2 1 13 13 C 1.55159 * 111.00310 * 55.42412 * 11 2 1 14 14 C 1.54367 * 102.92233 * 206.45230 * 13 11 2 15 15 N 1.47015 * 107.28929 * 22.13898 * 14 13 11 16 16 C 1.34778 * 125.65406 * 181.12738 * 15 14 13 17 17 O 1.21277 * 120.00569 * 179.97438 * 16 15 14 18 18 C 1.50700 * 119.99440 * 359.96162 * 16 15 14 19 19 C 1.50705 * 109.46926 * 179.97438 * 18 16 15 20 20 C 1.39374 * 119.50556 * 269.71964 * 19 18 16 21 21 C 1.36084 * 120.98866 * 179.77448 * 20 19 18 22 22 C 1.40540 * 119.65269 * 0.48066 * 21 20 19 23 23 C 1.40540 * 121.28402 * 179.75865 * 22 21 20 24 24 C 1.36090 * 119.65717 * 180.02562 * 23 22 21 25 25 C 1.39385 * 120.98467 * 0.02562 * 24 23 22 26 26 C 1.36083 * 120.99184 * 359.97438 * 25 24 23 27 27 C 1.40548 * 119.65462 * 359.97438 * 26 25 24 28 28 C 1.36092 * 119.50444 * 90.00096 * 19 18 16 29 29 C 1.47425 * 108.70579 * 1.08987 * 15 14 13 30 30 H 1.09007 * 109.46580 * 84.83995 * 1 2 3 31 31 H 1.09001 * 109.47292 * 204.83248 * 1 2 3 32 32 H 1.08990 * 109.47737 * 324.83575 * 1 2 3 33 33 H 0.96999 * 119.99958 * 180.02562 * 6 5 3 34 34 H 1.09004 * 110.72215 * 324.78723 * 13 11 2 35 35 H 1.09001 * 110.72255 * 88.05624 * 13 11 2 36 36 H 1.08997 * 109.84691 * 262.73188 * 14 13 11 37 37 H 1.09004 * 110.03146 * 141.64677 * 14 13 11 38 38 H 1.09005 * 109.47041 * 299.99383 * 18 16 15 39 39 H 1.09002 * 109.47674 * 59.99669 * 18 16 15 40 40 H 1.08007 * 119.50145 * 0.02562 * 20 19 18 41 41 H 1.07999 * 120.17558 * 180.26281 * 21 20 19 42 42 H 1.08000 * 120.17722 * 0.02562 * 23 22 21 43 43 H 1.08002 * 119.51373 * 179.97438 * 24 23 22 44 44 H 1.08001 * 119.50368 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.17618 * 180.02562 * 26 25 24 46 46 H 1.08007 * 120.17502 * 359.94447 * 28 19 18 47 47 H 1.08999 * 110.37196 * 217.03422 * 29 15 14 48 48 H 1.09002 * 110.36886 * 94.70540 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1831 1.2128 0.3124 5 6 1.5169 2.3526 -0.4070 6 7 0.3562 2.2907 -1.0244 7 14 2.3129 4.0102 -0.0783 8 1 3.1836 4.3771 -1.2241 9 1 1.2577 5.0411 0.0916 10 1 3.1305 3.9301 1.1588 11 6 2.1975 -1.2686 0.0006 12 1 3.2737 -1.0960 -0.0119 13 6 1.7637 -2.1618 -1.1917 14 6 2.0554 -3.5882 -0.6785 15 7 2.0781 -3.5280 0.7902 16 6 2.3228 -4.5652 1.6153 17 8 2.3166 -4.3991 2.8166 18 6 2.6040 -5.9315 1.0450 19 6 2.8432 -6.9058 2.1696 20 6 4.1381 -7.0975 2.6479 21 6 4.3878 -7.9663 3.6652 22 6 3.3277 -8.6900 4.2375 23 6 3.5474 -9.5997 5.2860 24 6 2.4965 -10.2835 5.8154 25 6 1.2023 -10.0961 5.3331 26 6 0.9518 -9.2237 4.3192 27 6 2.0117 -8.4987 3.7478 28 6 1.7922 -7.5894 2.6990 29 6 1.7898 -2.1449 1.2112 30 1 -0.3633 0.0924 -1.0236 31 1 -0.3634 -0.9326 0.4316 32 1 -0.3634 0.8400 0.5918 33 1 -0.0857 3.1059 -1.3091 34 1 0.7012 -2.0372 -1.4004 35 1 2.3602 -1.9402 -2.0767 36 1 3.0231 -3.9247 -1.0507 37 1 1.2731 -4.2713 -1.0095 38 1 1.7496 -6.2612 0.4537 39 1 3.4890 -5.8853 0.4103 40 1 4.9551 -6.5453 2.2073 41 1 5.3959 -8.1015 4.0284 42 1 4.5448 -9.7555 5.6696 43 1 2.6680 -10.9823 6.6208 44 1 0.3860 -10.6516 5.7707 45 1 -0.0562 -9.0885 3.9559 46 1 0.7946 -7.4333 2.3157 47 1 2.3842 -1.8829 2.0865 48 1 0.7273 -2.0268 1.4241 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980351811.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:29 Heat of formation + Delta-G solvation = 37.337693 kcal Electronic energy + Delta-G solvation = -28019.279821 eV Core-core repulsion = 24232.557044 eV Total energy + Delta-G solvation = -3786.722777 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.65834 -39.69935 -37.68042 -36.61120 -34.82677 -33.14866 -32.08743 -31.46118 -29.84604 -29.64201 -28.40495 -27.00425 -26.08321 -23.80136 -23.42270 -22.38393 -22.13605 -22.02560 -19.34756 -19.04240 -17.51229 -17.12616 -17.06932 -16.90875 -16.30223 -15.82069 -15.12712 -14.93699 -14.70345 -14.39375 -14.10888 -13.76813 -13.58841 -13.48473 -13.39926 -13.32731 -12.79509 -12.73324 -12.51744 -12.47031 -12.10928 -11.94384 -11.75813 -11.39355 -11.34512 -11.15217 -10.98575 -10.96043 -10.79226 -10.51916 -10.47588 -10.27718 -10.12476 -9.91384 -9.88483 -9.64821 -8.67108 -8.60751 -8.34797 -8.02708 -6.86765 -5.78173 -3.22831 0.38662 0.84558 1.91268 2.75760 2.80207 3.27402 3.35612 3.42701 3.45218 3.97441 4.37541 4.44874 4.49791 4.66080 4.72482 4.75467 4.84761 5.00302 5.02095 5.03146 5.18522 5.22485 5.27072 5.31414 5.37343 5.40541 5.50806 5.57898 5.60537 5.74608 5.79780 5.86840 5.90506 5.99482 6.06220 6.08034 6.27061 6.28029 6.36191 6.40529 6.46409 6.52419 6.61911 6.67395 6.76116 6.84496 6.85418 7.36306 7.66793 7.76975 7.77739 8.30754 8.36800 9.16950 9.79448 10.26355 11.26691 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.026151 B = 0.001958 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.438350 B =14298.471428 C =14378.404407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.587 5.587 3 C -0.258 4.258 4 H 0.071 0.929 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.174 3.826 12 H 0.078 0.922 13 C -0.152 4.152 14 C 0.102 3.898 15 N -0.614 5.614 16 C 0.525 3.475 17 O -0.538 6.538 18 C -0.101 4.101 19 C -0.056 4.056 20 C -0.097 4.097 21 C -0.108 4.108 22 C -0.052 4.052 23 C -0.106 4.106 24 C -0.121 4.121 25 C -0.122 4.122 26 C -0.104 4.104 27 C -0.048 4.048 28 C -0.093 4.093 29 C 0.085 3.915 30 H 0.031 0.969 31 H 0.000 1.000 32 H 0.047 0.953 33 H 0.253 0.747 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.122 0.878 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.126 0.874 46 H 0.125 0.875 47 H 0.071 0.929 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.120 -25.429 5.264 26.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.307 5.307 3 C -0.387 4.387 4 H 0.089 0.911 5 C -0.196 4.196 6 N -0.552 5.552 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.205 1.205 11 C 0.063 3.937 12 H 0.096 0.904 13 C -0.192 4.192 14 C -0.022 4.022 15 N -0.349 5.349 16 C 0.313 3.687 17 O -0.415 6.415 18 C -0.141 4.141 19 C -0.056 4.056 20 C -0.115 4.115 21 C -0.126 4.126 22 C -0.052 4.052 23 C -0.124 4.124 24 C -0.139 4.139 25 C -0.140 4.140 26 C -0.122 4.122 27 C -0.048 4.048 28 C -0.111 4.111 29 C -0.039 4.039 30 H 0.049 0.951 31 H 0.018 0.982 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.140 0.860 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.144 0.856 46 H 0.143 0.857 47 H 0.090 0.910 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.995 -25.202 5.897 26.189 hybrid contribution 0.258 1.002 -0.017 1.035 sum 4.253 -24.200 5.880 25.265 Atomic orbital electron populations 1.20833 0.82241 0.95664 0.99583 1.43844 1.01997 0.99864 1.85015 1.19241 0.96543 0.84750 1.38187 0.91124 1.24973 0.97544 0.98449 0.98653 1.70083 1.16948 1.26822 1.41391 0.86224 0.78284 0.83731 0.78096 1.21420 1.21557 1.20493 1.21392 0.96316 0.85812 0.90200 0.90430 1.23237 1.02929 0.92485 1.00556 1.22082 1.00679 0.99471 0.79949 1.48514 1.69446 1.09722 1.07197 1.20067 0.77218 0.85075 0.86335 1.90725 1.51775 1.84422 1.14598 1.20715 1.04576 0.91559 0.97208 1.19031 0.93569 0.96055 0.96961 1.20713 0.96248 0.97648 0.96844 1.20949 0.98241 0.96843 0.96606 1.18097 0.93014 0.97448 0.96671 1.21020 0.99292 0.96158 0.95948 1.20827 0.92869 1.00026 1.00186 1.20825 0.96942 0.98902 0.97285 1.21044 0.98275 0.96143 0.96695 1.18042 0.92999 0.97250 0.96530 1.20834 0.98650 0.95876 0.95757 1.22996 1.01180 0.79510 1.00228 0.95057 0.98166 0.93424 0.93675 0.90518 0.90486 0.91852 0.92055 0.88052 0.87971 0.85980 0.85549 0.85720 0.86164 0.86121 0.85640 0.85703 0.91022 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.84 7.65 59.85 0.46 4.29 16 2 N -0.59 -14.14 2.96 -171.03 -0.51 -14.65 16 3 C -0.26 -6.89 9.66 -15.06 -0.15 -7.04 16 4 H 0.07 1.84 7.82 -52.49 -0.41 1.43 16 5 C 0.00 0.05 5.12 -17.43 -0.09 -0.03 16 6 N -0.91 -25.79 10.50 55.49 0.58 -25.20 16 7 Si 0.91 21.54 29.57 -169.99 -5.03 16.51 16 8 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 C 0.17 3.38 3.54 -65.78 -0.23 3.14 16 12 H 0.08 1.52 7.93 -51.93 -0.41 1.11 16 13 C -0.15 -2.42 6.52 -24.87 -0.16 -2.59 16 14 C 0.10 1.28 6.49 -3.04 -0.02 1.26 16 15 N -0.61 -9.45 3.33 -170.50 -0.57 -10.02 16 16 C 0.53 8.05 7.84 -10.98 -0.09 7.96 16 17 O -0.54 -10.48 16.29 5.56 0.09 -10.39 16 18 C -0.10 -1.08 4.99 -29.03 -0.14 -1.23 16 19 C -0.06 -0.66 4.34 -104.97 -0.46 -1.12 16 20 C -0.10 -1.09 9.58 -39.93 -0.38 -1.47 16 21 C -0.11 -1.16 9.77 -39.49 -0.39 -1.54 16 22 C -0.05 -0.59 5.74 -106.83 -0.61 -1.21 16 23 C -0.11 -1.00 9.77 -39.49 -0.39 -1.38 16 24 C -0.12 -1.03 9.95 -39.93 -0.40 -1.43 16 25 C -0.12 -1.06 9.95 -39.93 -0.40 -1.46 16 26 C -0.10 -1.03 9.77 -39.49 -0.39 -1.42 16 27 C -0.05 -0.57 5.74 -106.83 -0.61 -1.18 16 28 C -0.09 -1.10 9.37 -39.49 -0.37 -1.47 16 29 C 0.09 1.56 6.46 -2.53 -0.02 1.55 16 30 H 0.03 0.80 7.42 -51.93 -0.39 0.41 16 31 H 0.00 0.00 6.25 -51.93 -0.32 -0.33 16 32 H 0.05 1.24 7.11 -51.93 -0.37 0.87 16 33 H 0.25 6.99 8.31 -40.82 -0.34 6.66 16 34 H 0.08 1.31 7.16 -51.93 -0.37 0.94 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.88 8.07 -51.93 -0.42 0.46 16 39 H 0.10 0.88 8.08 -51.93 -0.42 0.46 16 40 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 41 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 44 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 45 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 46 H 0.13 1.28 8.06 -52.48 -0.42 0.85 16 47 H 0.07 1.42 8.04 -51.93 -0.42 1.00 16 48 H 0.07 1.33 6.22 -51.93 -0.32 1.01 16 LS Contribution 389.47 15.07 5.87 5.87 Total: -1.00 -32.56 389.47 -11.60 -44.16 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -7.22 Total: 0.08 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -4.83 Total: -6.35 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: -0.49 Total: -49.87 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.56 -11.60 -44.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980351811.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.493 kcal (2) G-P(sol) polarization free energy of solvation -32.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds