Wall clock time and date at job start Tue Mar 31 2020 21:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36936 * 119.99767 * 2 1 4 4 H 1.07997 * 119.99887 * 160.48808 * 3 2 1 5 5 C 1.38816 * 119.99829 * 340.21392 * 3 2 1 6 6 N 1.31612 * 119.99957 * 347.26909 * 5 3 2 7 7 Si 1.86803 * 119.99908 * 167.27276 * 5 3 2 8 8 H 1.48502 * 109.47104 * 89.99690 * 7 5 3 9 9 H 1.48498 * 109.46981 * 209.99931 * 7 5 3 10 10 H 1.48502 * 109.46859 * 329.99996 * 7 5 3 11 11 C 1.46495 * 120.00308 * 179.97438 * 2 1 3 12 12 H 1.09005 * 110.88601 * 179.30049 * 11 2 1 13 13 C 1.55159 * 111.00310 * 55.42412 * 11 2 1 14 14 C 1.54367 * 102.92233 * 206.45230 * 13 11 2 15 15 N 1.47015 * 107.28929 * 22.13898 * 14 13 11 16 16 C 1.34778 * 125.65406 * 181.12738 * 15 14 13 17 17 O 1.21277 * 120.00569 * 179.97438 * 16 15 14 18 18 C 1.50700 * 119.99440 * 359.96162 * 16 15 14 19 19 C 1.50705 * 109.46926 * 179.97438 * 18 16 15 20 20 C 1.39374 * 119.50556 * 269.71964 * 19 18 16 21 21 C 1.36084 * 120.98866 * 179.77448 * 20 19 18 22 22 C 1.40540 * 119.65269 * 0.48066 * 21 20 19 23 23 C 1.40540 * 121.28402 * 179.75865 * 22 21 20 24 24 C 1.36090 * 119.65717 * 180.02562 * 23 22 21 25 25 C 1.39385 * 120.98467 * 0.02562 * 24 23 22 26 26 C 1.36083 * 120.99184 * 359.97438 * 25 24 23 27 27 C 1.40548 * 119.65462 * 359.97438 * 26 25 24 28 28 C 1.36092 * 119.50444 * 90.00096 * 19 18 16 29 29 C 1.47425 * 108.70579 * 1.08987 * 15 14 13 30 30 H 1.09007 * 109.46580 * 84.83995 * 1 2 3 31 31 H 1.09001 * 109.47292 * 204.83248 * 1 2 3 32 32 H 1.08990 * 109.47737 * 324.83575 * 1 2 3 33 33 H 0.96999 * 119.99958 * 180.02562 * 6 5 3 34 34 H 1.09004 * 110.72215 * 324.78723 * 13 11 2 35 35 H 1.09001 * 110.72255 * 88.05624 * 13 11 2 36 36 H 1.08997 * 109.84691 * 262.73188 * 14 13 11 37 37 H 1.09004 * 110.03146 * 141.64677 * 14 13 11 38 38 H 1.09005 * 109.47041 * 299.99383 * 18 16 15 39 39 H 1.09002 * 109.47674 * 59.99669 * 18 16 15 40 40 H 1.08007 * 119.50145 * 0.02562 * 20 19 18 41 41 H 1.07999 * 120.17558 * 180.26281 * 21 20 19 42 42 H 1.08000 * 120.17722 * 0.02562 * 23 22 21 43 43 H 1.08002 * 119.51373 * 179.97438 * 24 23 22 44 44 H 1.08001 * 119.50368 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.17618 * 180.02562 * 26 25 24 46 46 H 1.08007 * 120.17502 * 359.94447 * 28 19 18 47 47 H 1.08999 * 110.37196 * 217.03422 * 29 15 14 48 48 H 1.09002 * 110.36886 * 94.70540 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1831 1.2128 0.3124 5 6 1.5169 2.3526 -0.4070 6 7 0.3562 2.2907 -1.0244 7 14 2.3129 4.0102 -0.0783 8 1 3.1836 4.3771 -1.2241 9 1 1.2577 5.0411 0.0916 10 1 3.1305 3.9301 1.1588 11 6 2.1975 -1.2686 0.0006 12 1 3.2737 -1.0960 -0.0119 13 6 1.7637 -2.1618 -1.1917 14 6 2.0554 -3.5882 -0.6785 15 7 2.0781 -3.5280 0.7902 16 6 2.3228 -4.5652 1.6153 17 8 2.3166 -4.3991 2.8166 18 6 2.6040 -5.9315 1.0450 19 6 2.8432 -6.9058 2.1696 20 6 4.1381 -7.0975 2.6479 21 6 4.3878 -7.9663 3.6652 22 6 3.3277 -8.6900 4.2375 23 6 3.5474 -9.5997 5.2860 24 6 2.4965 -10.2835 5.8154 25 6 1.2023 -10.0961 5.3331 26 6 0.9518 -9.2237 4.3192 27 6 2.0117 -8.4987 3.7478 28 6 1.7922 -7.5894 2.6990 29 6 1.7898 -2.1449 1.2112 30 1 -0.3633 0.0924 -1.0236 31 1 -0.3634 -0.9326 0.4316 32 1 -0.3634 0.8400 0.5918 33 1 -0.0857 3.1059 -1.3091 34 1 0.7012 -2.0372 -1.4004 35 1 2.3602 -1.9402 -2.0767 36 1 3.0231 -3.9247 -1.0507 37 1 1.2731 -4.2713 -1.0095 38 1 1.7496 -6.2612 0.4537 39 1 3.4890 -5.8853 0.4103 40 1 4.9551 -6.5453 2.2073 41 1 5.3959 -8.1015 4.0284 42 1 4.5448 -9.7555 5.6696 43 1 2.6680 -10.9823 6.6208 44 1 0.3860 -10.6516 5.7707 45 1 -0.0562 -9.0885 3.9559 46 1 0.7946 -7.4333 2.3157 47 1 2.3842 -1.8829 2.0865 48 1 0.7273 -2.0268 1.4241 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980351811.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:28 Heat of formation + Delta-G solvation = 20.783004 kcal Electronic energy + Delta-G solvation = -28019.997686 eV Core-core repulsion = 24232.557044 eV Total energy + Delta-G solvation = -3787.440642 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.51189 -40.83491 -39.00435 -37.49549 -36.54166 -33.95452 -33.49971 -32.63079 -31.26813 -30.43420 -29.64561 -28.15799 -28.00110 -25.25217 -24.23832 -23.82315 -22.96955 -22.82130 -20.95565 -20.19071 -18.97198 -18.26067 -18.09475 -17.82721 -17.54463 -17.02386 -16.39762 -16.22124 -15.70307 -15.56295 -15.15412 -15.08197 -14.81556 -14.48320 -14.43322 -14.35824 -14.19651 -14.18423 -13.70883 -13.51846 -13.40505 -12.97139 -12.93045 -12.81885 -12.57395 -12.47062 -12.39539 -12.17527 -12.11143 -12.08507 -11.88153 -11.81448 -11.69223 -11.43971 -10.99173 -10.81238 -10.64584 -9.64313 -9.43715 -8.83445 -8.76785 -7.84568 -5.30551 -0.35361 0.08056 1.15047 1.45989 1.48199 1.56941 1.64220 1.87417 2.22270 2.51195 3.19095 3.28141 3.55058 3.60119 3.68835 3.75992 3.93582 3.98604 4.07580 4.13254 4.16295 4.21031 4.30961 4.35413 4.39500 4.46035 4.47818 4.52682 4.62723 4.66847 4.72418 4.79682 4.90236 4.91920 5.02366 5.06315 5.17210 5.23172 5.24961 5.32854 5.34310 5.36350 5.43867 5.56645 5.61847 5.65651 5.68999 5.72338 5.95495 6.13344 6.29287 6.59504 7.12370 7.17433 7.83725 8.26159 9.18727 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.026151 B = 0.001958 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.438350 B =14298.471428 C =14378.404407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.604 5.604 3 C -0.265 4.265 4 H 0.072 0.928 5 C -0.052 4.052 6 N -0.936 5.936 7 Si 0.968 3.032 8 H -0.282 1.282 9 H -0.294 1.294 10 H -0.274 1.274 11 C 0.166 3.834 12 H 0.074 0.926 13 C -0.142 4.142 14 C 0.108 3.892 15 N -0.614 5.614 16 C 0.523 3.477 17 O -0.587 6.587 18 C -0.088 4.088 19 C -0.072 4.072 20 C -0.114 4.114 21 C -0.115 4.115 22 C -0.075 4.075 23 C -0.117 4.117 24 C -0.124 4.124 25 C -0.122 4.122 26 C -0.122 4.122 27 C -0.072 4.072 28 C -0.108 4.108 29 C 0.097 3.903 30 H 0.011 0.989 31 H 0.025 0.975 32 H 0.015 0.985 33 H 0.248 0.752 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.148 0.852 44 H 0.145 0.855 45 H 0.138 0.862 46 H 0.133 0.867 47 H 0.049 0.951 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.187 -27.875 5.028 28.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.325 5.325 3 C -0.395 4.395 4 H 0.090 0.910 5 C -0.247 4.247 6 N -0.583 5.583 7 Si 0.797 3.203 8 H -0.209 1.209 9 H -0.221 1.221 10 H -0.200 1.200 11 C 0.057 3.943 12 H 0.092 0.908 13 C -0.182 4.182 14 C -0.014 4.014 15 N -0.348 5.348 16 C 0.314 3.686 17 O -0.468 6.468 18 C -0.127 4.127 19 C -0.073 4.073 20 C -0.132 4.132 21 C -0.132 4.132 22 C -0.075 4.075 23 C -0.134 4.134 24 C -0.141 4.141 25 C -0.140 4.140 26 C -0.140 4.140 27 C -0.072 4.072 28 C -0.126 4.126 29 C -0.029 4.029 30 H 0.029 0.971 31 H 0.044 0.956 32 H 0.034 0.966 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.165 0.835 42 H 0.163 0.837 43 H 0.165 0.835 44 H 0.163 0.837 45 H 0.156 0.844 46 H 0.151 0.849 47 H 0.067 0.933 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.088 -27.698 5.636 28.720 hybrid contribution -0.061 1.650 0.167 1.660 sum 5.027 -26.047 5.804 27.155 Atomic orbital electron populations 1.20502 0.82540 0.95521 0.97860 1.44004 1.02124 1.00959 1.85456 1.19553 0.96705 0.86065 1.37170 0.91014 1.25699 0.98312 1.01532 0.99154 1.70232 1.18215 1.27104 1.42721 0.85258 0.77257 0.79764 0.78057 1.20861 1.22069 1.19951 1.21536 0.95706 0.84740 0.92329 0.90777 1.23072 1.02155 0.93811 0.99191 1.22237 1.03790 0.97625 0.77759 1.48577 1.69325 1.08332 1.08585 1.20915 0.75751 0.86301 0.85677 1.90706 1.53847 1.85287 1.16941 1.20741 1.06938 0.87876 0.97159 1.19236 0.93871 0.96488 0.97674 1.20969 0.96613 0.98218 0.97412 1.21266 0.99195 0.96429 0.96354 1.18442 0.93186 0.98315 0.97582 1.21331 1.00746 0.95812 0.95545 1.21220 0.92543 0.99929 1.00446 1.21204 0.97976 0.98273 0.96559 1.21294 0.98604 0.96631 0.97428 1.18361 0.93900 0.97904 0.97083 1.21061 0.99169 0.96271 0.96118 1.22575 0.99692 0.81686 0.98902 0.97064 0.95618 0.96602 0.94221 0.91783 0.89617 0.88405 0.88849 0.85348 0.85052 0.84736 0.83506 0.83667 0.83472 0.83679 0.84427 0.84942 0.93278 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.82 7.65 127.77 0.98 9.80 16 2 N -0.60 -29.54 2.96 -695.02 -2.06 -31.60 16 3 C -0.26 -14.35 9.66 84.03 0.81 -13.54 16 4 H 0.07 3.78 7.82 -2.91 -0.02 3.75 16 5 C -0.05 -2.88 5.12 84.86 0.43 -2.44 16 6 N -0.94 -54.48 10.50 21.65 0.23 -54.26 16 7 Si 0.97 44.89 29.57 68.60 2.03 46.91 16 8 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 9 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 C 0.17 6.39 3.54 46.39 0.16 6.55 16 12 H 0.07 2.88 7.93 -2.38 -0.02 2.87 16 13 C -0.14 -4.27 6.52 31.80 0.21 -4.06 16 14 C 0.11 2.32 6.49 86.75 0.56 2.88 16 15 N -0.61 -17.73 3.33 -811.72 -2.70 -20.43 16 16 C 0.52 15.21 7.84 87.66 0.69 15.90 16 17 O -0.59 -22.96 16.29 -3.02 -0.05 -23.01 16 18 C -0.09 -1.64 4.99 29.10 0.15 -1.50 16 19 C -0.07 -1.62 4.34 -20.09 -0.09 -1.71 16 20 C -0.11 -2.45 9.58 22.04 0.21 -2.24 16 21 C -0.11 -2.35 9.77 22.33 0.22 -2.13 16 22 C -0.08 -1.66 5.74 -21.30 -0.12 -1.78 16 23 C -0.12 -2.01 9.77 22.33 0.22 -1.79 16 24 C -0.12 -1.85 9.95 22.05 0.22 -1.63 16 25 C -0.12 -1.92 9.95 22.04 0.22 -1.70 16 26 C -0.12 -2.33 9.77 22.33 0.22 -2.11 16 27 C -0.07 -1.68 5.74 -21.30 -0.12 -1.80 16 28 C -0.11 -2.49 9.37 22.33 0.21 -2.28 16 29 C 0.10 3.57 6.46 86.86 0.56 4.13 16 30 H 0.01 0.58 7.42 -2.38 -0.02 0.57 16 31 H 0.03 1.09 6.25 -2.39 -0.01 1.08 16 32 H 0.02 0.84 7.11 -2.39 -0.02 0.82 16 33 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 34 H 0.06 2.10 7.16 -2.39 -0.02 2.08 16 35 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.10 1.53 8.14 -2.39 -0.02 1.52 16 37 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.13 1.71 8.07 -2.38 -0.02 1.69 16 39 H 0.13 1.69 8.08 -2.39 -0.02 1.67 16 40 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 41 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 42 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 43 H 0.15 1.33 8.06 -2.91 -0.02 1.30 16 44 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 45 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 46 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 47 H 0.05 2.00 8.04 -2.39 -0.02 1.98 16 48 H 0.05 2.10 6.22 -2.39 -0.01 2.08 16 Total: -1.00 -73.66 389.47 4.13 -69.53 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.95 Total: 14.30 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: 5.73 Total: -1.45 kcal Atomic # 7 Polarization: -101.75 SS G_CDS: -4.53 Total: -106.29 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.05 Total: -23.01 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -73.66 4.13 -69.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980351811.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.312 kcal (2) G-P(sol) polarization free energy of solvation -73.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds