Wall clock time and date at job start Tue Mar 31 2020 21:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34778 * 119.99549 * 2 1 4 4 O 1.21281 * 119.99777 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.99961 * 0.02562 * 3 2 1 6 6 C 1.50700 * 109.46952 * 179.97438 * 5 3 2 7 7 C 1.39375 * 119.50622 * 89.99967 * 6 5 3 8 8 C 1.36094 * 120.99378 * 180.02562 * 7 6 5 9 9 C 1.40547 * 119.65169 * 359.97438 * 8 7 6 10 10 C 1.40531 * 121.28631 * 179.72962 * 9 8 7 11 11 C 1.36102 * 119.65099 * 179.73925 * 10 9 8 12 12 C 1.39376 * 120.98818 * 0.55409 * 11 10 9 13 13 C 1.36092 * 120.98650 * 359.71238 * 12 11 10 14 14 C 1.40538 * 119.65750 * 0.02562 * 13 12 11 15 15 C 1.36093 * 119.51004 * 270.01872 * 6 5 3 16 16 C 1.46497 * 120.00084 * 180.02562 * 2 1 3 17 17 H 1.09009 * 110.63756 * 181.68391 * 16 2 1 18 18 C 1.55154 * 110.72110 * 305.01900 * 16 2 1 19 19 C 1.54912 * 101.57910 * 153.86813 * 18 16 2 20 20 N 1.47428 * 104.83296 * 322.99275 * 19 18 16 21 21 C 1.36932 * 125.64667 * 204.16540 * 20 19 18 22 22 H 1.08000 * 119.99878 * 161.47715 * 21 20 19 23 23 C 1.38808 * 120.00479 * 341.47077 * 21 20 19 24 24 N 1.31618 * 120.00325 * 157.61895 * 23 21 20 25 25 Si 1.86809 * 119.99862 * 337.62307 * 23 21 20 26 26 H 1.48503 * 109.46881 * 84.53308 * 25 23 21 27 27 H 1.48498 * 109.47135 * 204.53020 * 25 23 21 28 28 H 1.48498 * 109.46898 * 324.53454 * 25 23 21 29 29 C 1.47021 * 108.70313 * 24.12759 * 20 19 18 30 30 H 1.09002 * 109.47468 * 90.00204 * 1 2 3 31 31 H 1.09005 * 109.46988 * 209.99437 * 1 2 3 32 32 H 1.08990 * 109.47723 * 329.99147 * 1 2 3 33 33 H 1.08998 * 109.47653 * 59.99549 * 5 3 2 34 34 H 1.09004 * 109.47259 * 299.99404 * 5 3 2 35 35 H 1.08003 * 119.50427 * 0.02562 * 7 6 5 36 36 H 1.07994 * 120.17678 * 180.02562 * 8 7 6 37 37 H 1.07997 * 120.17961 * 0.05131 * 10 9 8 38 38 H 1.08000 * 119.50468 * 180.24756 * 11 10 9 39 39 H 1.08002 * 119.50371 * 179.73672 * 12 11 10 40 40 H 1.08000 * 120.17044 * 180.02562 * 13 12 11 41 41 H 1.08003 * 120.17072 * 0.02562 * 15 6 5 42 42 H 1.08995 * 111.00642 * 271.94276 * 18 16 2 43 43 H 1.08998 * 111.00200 * 35.79682 * 18 16 2 44 44 H 1.09001 * 110.36682 * 204.15415 * 19 18 16 45 45 H 1.08997 * 110.46180 * 81.87557 * 19 18 16 46 46 H 0.97003 * 120.00054 * 180.02562 * 24 23 21 47 47 H 1.08999 * 109.88459 * 239.52077 * 29 20 19 48 48 H 1.09000 * 109.88110 * 118.35613 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3852 2.4723 0.0006 6 6 2.3644 3.6178 0.0011 7 6 2.8105 4.1401 -1.2117 8 6 3.6949 5.1739 -1.2465 9 6 4.1671 5.7258 -0.0433 10 6 5.0850 6.7900 -0.0392 11 6 5.5163 7.3026 1.1455 12 6 5.0701 6.7804 2.3583 13 6 4.1856 5.7466 2.3930 14 6 3.7136 5.1946 1.1898 15 6 2.8003 4.1266 1.1857 16 6 2.1975 -1.2687 -0.0006 17 1 3.2727 -1.0916 0.0295 18 6 1.7508 -2.1610 1.1875 19 6 2.0640 -3.5785 0.6467 20 7 1.7325 -3.5166 -0.7885 21 6 1.3992 -4.5851 -1.5774 22 1 0.8906 -4.4251 -2.5166 23 6 1.7151 -5.8739 -1.1700 24 7 1.0473 -6.8995 -1.6544 25 14 3.0879 -6.1528 0.0657 26 1 2.5552 -5.9904 1.4424 27 1 3.6288 -7.5262 -0.0968 28 1 4.1709 -5.1636 -0.1659 29 6 1.8183 -2.1176 -1.2323 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3634 0.8898 0.5139 33 1 0.7588 2.5298 0.8907 34 1 0.7582 2.5302 -0.8892 35 1 2.4488 3.7181 -2.1377 36 1 4.0314 5.5687 -2.1937 37 1 5.4424 7.2022 -0.9712 38 1 6.2186 8.1230 1.1459 39 1 5.4313 7.2028 3.2843 40 1 3.8483 5.3525 3.3402 41 1 2.4466 3.7112 2.1178 42 1 2.3373 -1.9451 2.0804 43 1 0.6851 -2.0446 1.3844 44 1 1.4433 -4.3214 1.1477 45 1 3.1196 -3.8134 0.7824 46 1 1.2678 -7.8001 -1.3694 47 1 0.8541 -1.7930 -1.6236 48 1 2.5848 -2.0188 -2.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033643004.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:07 Heat of formation + Delta-G solvation = 44.313223 kcal Electronic energy + Delta-G solvation = -28291.464389 eV Core-core repulsion = 24505.044094 eV Total energy + Delta-G solvation = -3786.420295 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.74754 -39.90400 -37.83982 -36.73393 -34.95025 -33.21326 -32.40055 -31.80769 -29.89398 -29.60749 -28.45472 -27.42219 -26.64301 -24.26000 -23.54970 -22.58655 -22.14215 -21.04315 -20.40914 -18.87059 -17.58844 -17.26778 -17.15528 -17.01766 -16.32324 -15.83265 -15.47928 -15.15359 -14.93297 -14.52230 -14.25597 -13.85242 -13.71199 -13.53448 -13.51304 -13.30833 -13.20139 -12.87878 -12.82474 -12.48832 -12.27951 -12.11324 -11.91518 -11.84327 -11.44594 -11.38599 -11.18300 -11.11651 -11.03148 -11.00215 -10.70120 -10.17247 -10.11909 -10.01113 -9.73624 -9.45323 -8.73161 -8.70526 -8.47245 -8.07009 -7.07160 -5.96199 -3.27055 0.34283 0.80217 1.86890 2.65050 2.69778 3.11026 3.33946 3.48833 3.51877 3.92125 4.31972 4.43193 4.53903 4.60306 4.62609 4.68502 4.78764 4.95961 4.98183 4.98523 5.05422 5.12553 5.17389 5.19329 5.27924 5.30355 5.31138 5.35834 5.50602 5.53954 5.55441 5.73269 5.75358 5.84699 5.87502 5.95320 6.01871 6.03691 6.22113 6.23141 6.36678 6.39619 6.40799 6.50524 6.56598 6.62979 6.71559 6.77617 6.81669 7.46710 7.67985 8.22083 8.29311 8.81050 9.66856 10.14618 11.19661 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.024396 B = 0.002162 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.459852 B =12945.332081 C =13218.055360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.603 5.603 3 C 0.514 3.486 4 O -0.534 6.534 5 C -0.103 4.103 6 C -0.057 4.057 7 C -0.097 4.097 8 C -0.108 4.108 9 C -0.052 4.052 10 C -0.106 4.106 11 C -0.121 4.121 12 C -0.121 4.121 13 C -0.104 4.104 14 C -0.049 4.049 15 C -0.093 4.093 16 C 0.126 3.874 17 H 0.106 0.894 18 C -0.140 4.140 19 C 0.112 3.888 20 N -0.607 5.607 21 C -0.241 4.241 22 H 0.092 0.908 23 C 0.022 3.978 24 N -0.908 5.908 25 Si 0.882 3.118 26 H -0.285 1.285 27 H -0.302 1.302 28 H -0.276 1.276 29 C 0.129 3.871 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.028 0.972 46 H 0.263 0.737 47 H 0.038 0.962 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.055 29.231 6.986 30.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.336 5.336 3 C 0.301 3.699 4 O -0.410 6.410 5 C -0.143 4.143 6 C -0.058 4.058 7 C -0.115 4.115 8 C -0.126 4.126 9 C -0.052 4.052 10 C -0.124 4.124 11 C -0.139 4.139 12 C -0.139 4.139 13 C -0.122 4.122 14 C -0.049 4.049 15 C -0.111 4.111 16 C 0.022 3.978 17 H 0.124 0.876 18 C -0.179 4.179 19 C -0.014 4.014 20 N -0.334 5.334 21 C -0.368 4.368 22 H 0.110 0.890 23 C -0.176 4.176 24 N -0.551 5.551 25 Si 0.712 3.288 26 H -0.212 1.212 27 H -0.230 1.230 28 H -0.202 1.202 29 C 0.003 3.997 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.045 0.955 46 H 0.073 0.927 47 H 0.056 0.944 48 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.648 28.971 6.898 29.826 hybrid contribution 0.765 -0.462 0.615 1.085 sum 2.413 28.509 7.513 29.581 Atomic orbital electron populations 1.21844 0.79554 1.03301 1.02357 1.47840 1.07043 1.05734 1.72992 1.20467 0.88083 0.84905 0.76422 1.90725 1.13827 1.87169 1.49288 1.20775 0.97614 0.90602 1.05284 1.19027 0.97714 0.95596 0.93433 1.20717 0.97291 0.96023 0.97424 1.20963 0.97622 0.96974 0.97016 1.18102 0.97530 0.96551 0.93011 1.21030 0.96967 0.95924 0.98473 1.20834 1.00298 1.00235 0.92513 1.20829 0.97972 0.97078 0.98026 1.21038 0.97585 0.96514 0.97073 1.18036 0.97508 0.96329 0.92986 1.20820 0.96862 0.95633 0.97798 1.22207 0.97493 0.81712 0.96359 0.87581 1.23113 1.01568 0.96231 0.97003 1.21949 0.98194 0.94872 0.86335 1.44733 1.81816 1.02666 1.04230 1.18617 1.31369 0.83041 1.03811 0.89009 1.24994 0.99086 0.95107 0.98456 1.69836 1.39915 0.98756 1.46630 0.86997 0.84553 0.76030 0.81207 1.21178 1.22969 1.20171 1.21589 0.98807 0.85285 0.94058 0.92162 0.90077 0.91259 0.87901 0.87768 0.85945 0.85523 0.85689 0.86143 0.86115 0.85662 0.85742 0.91329 0.90607 0.91940 0.95479 0.92680 0.94450 0.94816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 9.13 59.85 0.55 1.28 16 2 N -0.60 -8.21 2.88 -171.84 -0.50 -8.71 16 3 C 0.51 7.06 7.67 -10.99 -0.08 6.98 16 4 O -0.53 -9.60 15.40 5.56 0.09 -9.51 16 5 C -0.10 -0.97 4.35 -29.04 -0.13 -1.10 16 6 C -0.06 -0.63 4.34 -104.97 -0.46 -1.08 16 7 C -0.10 -1.03 9.58 -39.93 -0.38 -1.41 16 8 C -0.11 -1.10 9.77 -39.48 -0.39 -1.49 16 9 C -0.05 -0.57 5.74 -106.83 -0.61 -1.18 16 10 C -0.11 -0.96 9.77 -39.49 -0.39 -1.34 16 11 C -0.12 -0.99 9.95 -39.93 -0.40 -1.39 16 12 C -0.12 -1.01 9.95 -39.93 -0.40 -1.41 16 13 C -0.10 -0.98 9.77 -39.49 -0.39 -1.37 16 14 C -0.05 -0.54 5.74 -106.84 -0.61 -1.16 16 15 C -0.09 -1.02 9.37 -39.49 -0.37 -1.39 16 16 C 0.13 2.15 3.36 -66.10 -0.22 1.92 16 17 H 0.11 1.99 6.99 -51.92 -0.36 1.63 16 18 C -0.14 -2.35 6.61 -24.58 -0.16 -2.51 16 19 C 0.11 2.43 4.70 -2.53 -0.01 2.41 16 20 N -0.61 -14.67 3.21 -170.07 -0.55 -15.22 16 21 C -0.24 -6.84 10.57 -15.06 -0.16 -7.00 16 22 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 23 C 0.02 0.65 5.43 -17.43 -0.09 0.55 16 24 N -0.91 -27.92 13.97 55.49 0.78 -27.14 16 25 Si 0.88 22.74 24.27 -169.99 -4.13 18.61 16 26 H -0.28 -7.00 6.49 56.52 0.37 -6.63 16 27 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 28 H -0.28 -7.11 6.66 56.52 0.38 -6.74 16 29 C 0.13 2.59 6.88 -3.06 -0.02 2.57 16 30 H 0.06 0.59 7.89 -51.93 -0.41 0.18 16 31 H 0.08 0.89 6.08 -51.93 -0.32 0.57 16 32 H 0.07 0.47 6.44 -51.93 -0.33 0.14 16 33 H 0.10 0.72 7.33 -51.93 -0.38 0.34 16 34 H 0.10 0.77 8.04 -51.93 -0.42 0.35 16 35 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 36 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 38 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.08 1.15 6.09 -51.93 -0.32 0.84 16 44 H 0.06 1.42 6.64 -51.93 -0.34 1.08 16 45 H 0.03 0.62 5.57 -51.93 -0.29 0.34 16 46 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 47 H 0.04 0.72 6.94 -51.93 -0.36 0.36 16 48 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 379.73 15.07 5.72 5.72 Total: -1.00 -35.03 379.73 -10.26 -45.29 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -6.96 Total: -0.96 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -4.72 Total: -8.09 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.27 Total: -51.07 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.13 Total: 18.61 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.03 -10.26 -45.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033643004.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.606 kcal (2) G-P(sol) polarization free energy of solvation -35.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds