Wall clock time and date at job start Tue Mar 31 2020 21:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 119.99863 * 2 1 4 4 H 1.48497 * 109.47528 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47287 * 300.00290 * 3 2 1 6 6 H 1.48501 * 109.47078 * 60.00073 * 3 2 1 7 7 C 1.38807 * 120.00361 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00360 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99901 * 0.02562 * 7 2 1 10 10 C 1.44684 * 119.99978 * 180.02562 * 9 7 2 11 11 H 1.10365 * 108.64775 * 326.26295 * 10 9 7 12 12 C 1.53965 * 113.53119 * 85.89733 * 10 9 7 13 13 C 1.51625 * 111.29909 * 12.07570 * 12 10 9 14 14 C 1.52422 * 112.43740 * 64.67050 * 13 12 10 15 15 C 1.52409 * 111.45752 * 56.06723 * 14 13 12 16 16 C 1.51897 * 113.32340 * 275.58763 * 15 14 13 17 17 N 1.45368 * 115.87353 * 346.84839 * 16 15 14 18 18 C 1.34587 * 121.32134 * 279.58752 * 17 16 15 19 19 O 1.21607 * 119.99970 * 188.86975 * 18 17 16 20 20 C 1.47429 * 120.00002 * 8.86748 * 18 17 16 21 21 C 1.41296 * 126.41273 * 172.17550 * 20 18 17 22 22 N 1.30449 * 108.01990 * 179.97438 * 21 20 18 23 23 N 1.39936 * 108.89940 * 0.02562 * 22 21 20 24 24 C 1.46497 * 125.75360 * 179.97438 * 23 22 21 25 25 C 1.52993 * 109.47498 * 304.97782 * 24 23 22 26 26 F 1.39895 * 109.47296 * 179.97438 * 25 24 23 27 27 C 1.34262 * 108.49091 * 359.75192 * 23 22 21 28 28 C 1.48436 * 118.52694 * 104.02208 * 17 16 15 29 29 H 0.97002 * 120.00491 * 359.97438 * 1 2 3 30 30 H 0.96993 * 119.99995 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.21981 * 133.80303 * 12 10 9 32 32 H 1.09476 * 108.46924 * 251.63790 * 12 10 9 33 33 H 1.09997 * 108.64567 * 184.71104 * 13 12 10 34 34 H 1.09144 * 110.18627 * 301.85332 * 13 12 10 35 35 H 1.07863 * 112.18398 * 289.78373 * 14 13 12 36 36 H 1.10910 * 107.37242 * 173.71539 * 14 13 12 37 37 H 1.10043 * 108.92383 * 153.83790 * 15 14 13 38 38 H 1.09923 * 109.07755 * 37.68926 * 15 14 13 39 39 H 1.10197 * 108.90617 * 224.80489 * 16 15 14 40 40 H 1.10012 * 109.13552 * 109.46815 * 16 15 14 41 41 H 1.07995 * 125.98813 * 0.02562 * 21 20 18 42 42 H 1.09004 * 109.46714 * 64.98052 * 24 23 22 43 43 H 1.09003 * 109.47266 * 184.97650 * 24 23 22 44 44 H 1.09003 * 109.47384 * 300.00423 * 25 24 23 45 45 H 1.09005 * 109.46851 * 60.00210 * 25 24 23 46 46 H 1.08000 * 126.29260 * 180.24315 * 27 23 22 47 47 H 1.08761 * 109.29312 * 153.60502 * 28 17 16 48 48 H 1.08537 * 109.58843 * 32.10439 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0491 -3.6410 -0.0016 11 1 2.9791 -3.5115 -0.5816 12 6 2.4428 -4.1234 1.4065 13 6 1.7288 -3.3271 2.4812 14 6 0.2187 -3.5318 2.4504 15 6 -0.1465 -5.0068 2.5683 16 6 -0.1141 -5.7425 1.2398 17 7 -0.0430 -4.9060 0.0530 18 6 -1.1411 -4.3149 -0.4532 19 8 -1.0879 -3.7551 -1.5314 20 6 -2.4083 -4.3460 0.2996 21 6 -3.5928 -3.6465 -0.0229 22 7 -4.4892 -3.9327 0.8806 23 7 -3.9293 -4.8155 1.8109 24 6 -4.6130 -5.3741 2.9799 25 6 -5.1725 -4.2359 3.8356 26 9 -5.8259 -4.7694 4.9517 27 6 -2.6614 -5.0681 1.4486 28 6 1.2555 -4.7920 -0.6572 29 1 -0.4851 0.8400 0.0004 30 1 0.3557 -2.3880 -0.0016 31 1 2.2021 -5.1821 1.5034 32 1 3.5248 -4.0049 1.5238 33 1 2.1035 -3.6482 3.4643 34 1 1.9598 -2.2653 2.3793 35 1 -0.2369 -3.0736 1.5867 36 1 -0.2044 -3.0093 3.3325 37 1 -1.1534 -5.0914 3.0042 38 1 0.5447 -5.4929 3.2714 39 1 -1.0135 -6.3741 1.1594 40 1 0.7433 -6.4317 1.2300 41 1 -3.7319 -2.9905 -0.8694 42 1 -5.4297 -6.0165 2.6506 43 1 -3.9063 -5.9583 3.5694 44 1 -4.3558 -3.5935 4.1649 45 1 -5.8793 -3.6518 3.2461 46 1 -1.9665 -5.7155 1.9628 47 1 1.0734 -4.5593 -1.7039 48 1 1.8059 -5.7225 -0.5607 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088338421.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:11 Heat of formation + Delta-G solvation = 40.097673 kcal Electronic energy + Delta-G solvation = -31956.229344 eV Core-core repulsion = 27771.149776 eV Total energy + Delta-G solvation = -4185.079568 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.03756 -41.50089 -39.53821 -37.10099 -34.96414 -34.25142 -33.42036 -32.31489 -30.33854 -29.29108 -29.15059 -27.72286 -26.33972 -24.12108 -23.85892 -22.98989 -21.72728 -20.87197 -20.45575 -19.54636 -18.34987 -17.36921 -17.22710 -16.74799 -16.24243 -15.84222 -15.72430 -15.45782 -15.21711 -14.70819 -14.55517 -14.36862 -13.97356 -13.66684 -13.57471 -13.40978 -13.32857 -13.04651 -12.75986 -12.38364 -11.99027 -11.83028 -11.80892 -11.40496 -11.36354 -11.28857 -11.02296 -10.79349 -10.77331 -10.66900 -10.53192 -10.10420 -9.99057 -9.86217 -9.60698 -9.50376 -9.46802 -9.26661 -8.76098 -8.53272 -8.11967 -6.79210 -5.65080 -2.93167 1.60726 2.22004 2.45472 3.39629 3.48046 3.53823 3.56017 3.89173 3.92038 4.23295 4.47034 4.64080 4.66433 4.67237 4.75535 4.83582 5.07118 5.14640 5.18240 5.33144 5.40819 5.48351 5.56735 5.58972 5.62849 5.64862 5.76185 5.78856 5.84325 5.92356 6.10492 6.16409 6.18627 6.35409 6.50408 6.60273 6.61552 6.69442 6.73603 6.79857 6.96704 7.07907 7.26802 7.33781 7.61617 7.81123 7.93034 8.54506 8.79583 9.64876 10.30268 10.61200 11.56409 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.011601 B = 0.004197 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.032136 B = 6670.536376 C = 7276.258421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.900 3.100 4 H -0.282 1.282 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.238 4.238 8 H 0.068 0.932 9 N -0.701 5.701 10 C 0.166 3.834 11 H 0.043 0.957 12 C -0.139 4.139 13 C -0.089 4.089 14 C -0.100 4.100 15 C -0.143 4.143 16 C 0.104 3.896 17 N -0.599 5.599 18 C 0.594 3.406 19 O -0.522 6.522 20 C -0.267 4.267 21 C 0.118 3.882 22 N -0.308 5.308 23 N -0.370 5.370 24 C 0.106 3.894 25 C 0.051 3.949 26 F -0.210 7.210 27 C 0.066 3.934 28 C 0.105 3.895 29 H 0.252 0.748 30 H 0.390 0.610 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.024 0.976 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.034 0.966 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.195 0.805 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.084 0.916 45 H 0.093 0.907 46 H 0.212 0.788 47 H 0.086 0.914 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.537 -16.789 7.921 19.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.731 3.269 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.369 4.369 8 H 0.086 0.914 9 N -0.342 5.342 10 C 0.053 3.947 11 H 0.061 0.939 12 C -0.180 4.180 13 C -0.127 4.127 14 C -0.138 4.138 15 C -0.182 4.182 16 C -0.020 4.020 17 N -0.332 5.332 18 C 0.383 3.617 19 O -0.397 6.397 20 C -0.281 4.281 21 C -0.070 4.070 22 N -0.127 5.127 23 N -0.150 5.150 24 C -0.017 4.017 25 C -0.005 4.005 26 F -0.191 7.191 27 C -0.082 4.082 28 C -0.017 4.017 29 H 0.062 0.938 30 H 0.226 0.774 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.043 0.957 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.212 0.788 42 H 0.115 0.885 43 H 0.125 0.875 44 H 0.103 0.897 45 H 0.111 0.889 46 H 0.227 0.773 47 H 0.105 0.895 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.696 -16.180 7.872 19.199 hybrid contribution 1.062 0.791 0.137 1.331 sum -5.634 -15.389 8.009 18.241 Atomic orbital electron populations 1.69695 1.04908 1.25178 1.57204 1.24691 0.95377 0.97361 1.03104 0.86232 0.78806 0.84763 0.77066 1.20695 1.21994 1.22144 1.19220 0.90792 0.84084 1.42798 0.91377 1.41821 1.06264 0.99021 1.87137 1.20679 0.94149 0.87021 0.92898 0.93905 1.22414 0.98636 0.98109 0.98862 1.20896 0.93888 1.02477 0.95409 1.21174 0.97097 0.92548 1.03015 1.22182 1.00861 0.98927 0.96205 1.21495 1.02185 0.92295 0.86019 1.47599 1.09055 1.50935 1.25620 1.17079 0.81874 0.78172 0.84579 1.90835 1.84448 1.43386 1.21047 1.20438 0.97482 1.09350 1.00864 1.24070 0.89208 0.96548 0.97197 1.77150 1.22611 1.10834 1.02109 1.48240 1.09567 1.36294 1.20942 1.22191 0.99179 0.96091 0.84233 1.22192 0.98403 0.95521 0.84380 1.92786 1.83321 1.88310 1.54660 1.24758 0.86910 1.00007 0.96498 1.22788 0.82619 0.98492 0.97831 0.93754 0.77357 0.93679 0.94060 0.95686 0.90155 0.89293 0.94695 0.92626 0.91413 0.91996 0.90400 0.78809 0.88466 0.87511 0.89737 0.88908 0.77281 0.89520 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.12 13.06 55.49 0.72 -27.39 16 2 C -0.01 -0.25 5.50 -17.44 -0.10 -0.35 16 3 Si 0.90 22.65 29.55 -169.99 -5.02 17.63 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 7 C -0.24 -6.52 8.91 -15.06 -0.13 -6.65 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.70 -17.20 3.46 -52.84 -0.18 -17.38 16 10 C 0.17 3.19 2.77 -67.65 -0.19 3.01 16 11 H 0.04 0.85 8.13 -51.15 -0.42 0.44 16 12 C -0.14 -2.27 5.22 -26.92 -0.14 -2.41 16 13 C -0.09 -1.58 4.83 -27.72 -0.13 -1.71 16 14 C -0.10 -1.69 4.92 -27.33 -0.13 -1.83 16 15 C -0.14 -1.65 4.38 -27.59 -0.12 -1.78 16 16 C 0.10 1.17 4.08 -5.21 -0.02 1.15 16 17 N -0.60 -9.33 1.49 -173.44 -0.26 -9.58 16 18 C 0.59 11.10 5.29 -12.60 -0.07 11.03 16 19 O -0.52 -12.07 15.98 5.27 0.08 -11.98 16 20 C -0.27 -4.31 5.87 -105.06 -0.62 -4.93 16 21 C 0.12 1.93 11.84 -16.98 -0.20 1.73 16 22 N -0.31 -4.55 12.33 30.86 0.38 -4.17 16 23 N -0.37 -4.36 3.65 -60.81 -0.22 -4.58 16 24 C 0.11 0.83 6.94 -4.05 -0.03 0.80 16 25 C 0.05 0.44 7.73 37.15 0.29 0.73 16 26 F -0.21 -2.03 17.36 2.25 0.04 -1.99 16 27 C 0.07 0.81 8.17 -16.56 -0.14 0.67 16 28 C 0.11 1.71 5.58 -2.23 -0.01 1.70 16 29 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.39 10.30 4.16 -40.82 -0.17 10.13 16 31 H 0.04 0.60 4.94 -51.93 -0.26 0.35 16 32 H 0.04 0.66 8.18 -51.66 -0.42 0.24 16 33 H 0.02 0.39 8.23 -51.36 -0.42 -0.04 16 34 H 0.08 1.77 6.89 -51.85 -0.36 1.41 16 35 H 0.09 1.87 4.02 -52.56 -0.21 1.66 16 36 H 0.03 0.59 8.29 -50.83 -0.42 0.17 16 37 H 0.06 0.54 5.44 -51.33 -0.28 0.26 16 38 H 0.07 0.67 8.06 -51.40 -0.41 0.26 16 39 H 0.06 0.56 5.42 -51.25 -0.28 0.28 16 40 H 0.08 0.72 6.72 -51.35 -0.35 0.38 16 41 H 0.20 3.12 8.06 -52.49 -0.42 2.70 16 42 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.11 0.55 8.06 -51.93 -0.42 0.13 16 44 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.21 1.92 2.75 -52.49 -0.14 1.78 16 47 H 0.09 1.61 7.16 -52.06 -0.37 1.24 16 48 H 0.07 0.91 7.46 -52.19 -0.39 0.52 16 LS Contribution 362.79 15.07 5.47 5.47 Total: -1.00 -34.64 362.79 -7.29 -41.93 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -6.56 Total: 10.89 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -1.74 Total: 1.16 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: 0.44 Total: -63.10 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.64 -7.29 -41.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088338421.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.029 kcal (2) G-P(sol) polarization free energy of solvation -34.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds