Wall clock time and date at job start Tue Mar 31 2020 22:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30380 * 125.96704 * 2 1 4 4 N 1.39922 * 109.02030 * 180.27441 * 3 2 1 5 5 C 1.46495 * 125.73834 * 179.70798 * 4 3 2 6 6 C 1.34411 * 108.51536 * 359.73270 * 4 3 2 7 7 F 1.35096 * 126.34133 * 180.02562 * 6 4 3 8 8 C 1.38506 * 107.31376 * 359.97438 * 6 4 3 9 9 C 1.47163 * 126.46114 * 179.97438 * 8 6 4 10 10 O 1.21638 * 119.99834 * 82.30856 * 9 8 6 11 11 N 1.34776 * 120.00457 * 262.31679 * 9 8 6 12 12 C 1.45332 * 120.35540 * 185.04934 * 11 9 8 13 13 C 1.53052 * 108.62257 * 223.25120 * 12 11 9 14 14 C 1.52883 * 109.24736 * 77.97391 * 13 12 11 15 15 C 1.53966 * 109.71560 * 287.12541 * 14 13 12 16 16 C 1.52448 * 110.72966 * 315.64503 * 15 14 13 17 17 C 1.53799 * 109.42212 * 113.73121 * 16 15 14 18 18 H 1.08998 * 109.57616 * 42.06783 * 17 16 15 19 19 N 1.46508 * 109.52082 * 162.21975 * 17 16 15 20 20 C 1.36936 * 119.99806 * 204.68288 * 19 17 16 21 21 H 1.07998 * 120.00147 * 0.02562 * 20 19 17 22 22 C 1.38811 * 119.99723 * 180.02562 * 20 19 17 23 23 N 1.31611 * 120.00222 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99844 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46965 * 89.99981 * 24 22 20 26 26 H 1.48496 * 109.47142 * 210.00089 * 24 22 20 27 27 H 1.48504 * 109.46885 * 330.00370 * 24 22 20 28 28 C 1.46961 * 120.34759 * 5.32027 * 11 9 8 29 29 H 1.08996 * 109.47792 * 275.14542 * 1 2 3 30 30 H 1.08998 * 109.47222 * 35.14523 * 1 2 3 31 31 H 1.09006 * 109.46864 * 155.14212 * 1 2 3 32 32 H 1.08997 * 109.47442 * 270.02176 * 5 4 3 33 33 H 1.08995 * 109.47618 * 30.02681 * 5 4 3 34 34 H 1.09004 * 109.47119 * 150.02188 * 5 4 3 35 35 H 1.08997 * 109.67773 * 343.06846 * 12 11 9 36 36 H 1.09000 * 109.67828 * 103.61523 * 12 11 9 37 37 H 1.09003 * 109.55434 * 318.05076 * 13 12 11 38 38 H 1.08998 * 109.58729 * 197.91987 * 13 12 11 39 39 H 1.08993 * 109.43419 * 167.04407 * 14 13 12 40 40 H 1.09000 * 109.38428 * 47.17040 * 14 13 12 41 41 H 1.08995 * 109.22395 * 195.32499 * 15 14 13 42 42 H 1.08996 * 109.19041 * 75.94089 * 15 14 13 43 43 H 1.09005 * 109.48159 * 353.74115 * 16 15 14 44 44 H 1.09009 * 109.47629 * 233.71744 * 16 15 14 45 45 H 0.97000 * 119.99781 * 24.68917 * 19 17 16 46 46 H 0.97003 * 119.99864 * 179.97438 * 23 22 20 47 47 H 1.09004 * 109.53219 * 188.25925 * 28 11 9 48 48 H 1.08994 * 109.54057 * 308.41650 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6474 -0.0063 5 6 4.7762 1.5354 -0.0144 6 6 3.6479 -0.6962 -0.0043 7 9 4.7576 -1.4667 -0.0084 8 6 2.3374 -1.1445 0.0039 9 6 1.8930 -2.5474 0.0082 10 8 1.8498 -3.1684 1.0532 11 7 1.5340 -3.1442 -1.1456 12 6 0.9907 -4.4921 -1.1373 13 6 1.6305 -5.2841 -2.2800 14 6 3.0382 -5.7152 -1.8680 15 6 3.9782 -4.4958 -1.8764 16 6 3.7579 -3.6533 -3.1276 17 6 3.1784 -2.2858 -2.7279 18 1 3.6935 -1.9159 -1.8415 19 7 3.3576 -1.3372 -3.8299 20 6 3.4036 0.0075 -3.5750 21 1 3.3082 0.3686 -2.5617 22 6 3.5729 0.9064 -4.6192 23 7 3.6887 0.4663 -5.8541 24 14 3.6364 2.7406 -4.2714 25 1 5.0421 3.1486 -4.0213 26 1 3.1057 3.4850 -5.4417 27 1 2.8118 3.0464 -3.0748 28 6 1.6933 -2.4410 -2.4262 29 1 -0.3634 0.0922 1.0234 30 1 -0.3633 0.8403 -0.5916 31 1 -0.3633 -0.9325 -0.4320 32 1 5.0594 1.7539 -1.0440 33 1 4.5286 2.4644 0.4992 34 1 5.6076 1.0488 0.4957 35 1 1.2175 -4.9734 -0.1860 36 1 -0.0891 -4.4535 -1.2814 37 1 1.6881 -4.6579 -3.1704 38 1 1.0283 -6.1668 -2.4949 39 1 3.4083 -6.4631 -2.5691 40 1 3.0070 -6.1420 -0.8655 41 1 5.0123 -4.8396 -1.8527 42 1 3.7823 -3.8863 -0.9943 43 1 3.0602 -4.1638 -3.7915 44 1 4.7088 -3.5092 -3.6409 45 1 3.4436 -1.6616 -4.7400 46 1 3.8066 1.0945 -6.5838 47 1 1.2184 -3.0175 -3.2201 48 1 1.2285 -1.4572 -2.3622 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088419801.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:21 Heat of formation + Delta-G solvation = 5.992167 kcal Electronic energy + Delta-G solvation = -33083.220368 eV Core-core repulsion = 28896.661874 eV Total energy + Delta-G solvation = -4186.558494 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.47506 -42.57053 -41.12369 -38.81704 -36.45765 -35.37732 -34.95581 -33.94015 -31.77775 -31.12685 -30.43579 -28.79763 -27.55978 -26.91356 -25.68578 -24.32662 -22.85388 -22.55117 -21.68458 -20.79768 -20.09750 -19.09269 -18.66354 -18.13937 -17.66525 -17.50730 -17.27809 -16.87378 -16.37373 -15.93168 -15.73479 -15.37587 -15.33877 -15.05852 -14.86543 -14.52947 -14.30155 -14.26110 -14.21226 -13.92089 -13.64651 -13.48355 -13.32940 -13.20497 -13.08063 -12.94978 -12.83889 -12.58712 -12.24971 -12.03561 -12.00643 -11.90492 -11.71932 -11.47282 -11.42183 -11.22107 -11.06333 -10.91410 -10.34442 -9.74145 -9.60208 -8.92081 -7.92436 -5.18985 0.32745 0.96034 1.22191 1.38233 1.43074 1.44259 1.51229 2.16065 2.54648 2.79278 3.26018 3.42194 3.61117 3.80002 3.85713 3.96998 4.02567 4.15034 4.16530 4.18812 4.19366 4.22881 4.26648 4.47212 4.50818 4.57307 4.63010 4.71249 4.73571 4.76909 4.82917 4.87655 4.90332 4.97009 5.03850 5.12030 5.23208 5.29332 5.34912 5.41520 5.48298 5.55858 5.58229 5.67520 5.73551 6.26276 6.32892 6.36899 7.12621 7.37452 8.10024 8.35732 9.30760 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.010701 B = 0.006414 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.040686 B = 4364.267767 C = 5550.342137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.124 3.876 3 N -0.284 5.284 4 N -0.367 5.367 5 C 0.081 3.919 6 C 0.291 3.709 7 F -0.094 7.094 8 C -0.301 4.301 9 C 0.606 3.394 10 O -0.571 6.571 11 N -0.581 5.581 12 C 0.105 3.895 13 C -0.143 4.143 14 C -0.109 4.109 15 C -0.113 4.113 16 C -0.121 4.121 17 C 0.155 3.845 18 H 0.042 0.958 19 N -0.727 5.727 20 C -0.218 4.218 21 H 0.074 0.926 22 C -0.067 4.067 23 N -0.964 5.964 24 Si 0.941 3.059 25 H -0.286 1.286 26 H -0.299 1.299 27 H -0.271 1.271 28 C 0.105 3.895 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.038 0.962 43 H 0.082 0.918 44 H 0.047 0.953 45 H 0.375 0.625 46 H 0.248 0.752 47 H 0.097 0.903 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.094 -7.723 10.460 13.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.043 4.043 3 N -0.107 5.107 4 N -0.151 5.151 5 C -0.059 4.059 6 C 0.143 3.857 7 F -0.073 7.073 8 C -0.317 4.317 9 C 0.393 3.607 10 O -0.451 6.451 11 N -0.312 5.312 12 C -0.016 4.016 13 C -0.180 4.180 14 C -0.147 4.147 15 C -0.151 4.151 16 C -0.159 4.159 17 C 0.046 3.954 18 H 0.059 0.941 19 N -0.367 5.367 20 C -0.350 4.350 21 H 0.092 0.908 22 C -0.259 4.259 23 N -0.615 5.615 24 Si 0.772 3.228 25 H -0.213 1.213 26 H -0.226 1.226 27 H -0.195 1.195 28 C -0.020 4.020 29 H 0.121 0.879 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.139 0.861 34 H 0.132 0.868 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.119 0.881 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.101 0.899 44 H 0.065 0.935 45 H 0.208 0.792 46 H 0.057 0.943 47 H 0.115 0.885 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.900 -6.559 11.088 13.460 hybrid contribution 0.959 0.373 -0.629 1.206 sum -2.941 -6.186 10.459 12.503 Atomic orbital electron populations 1.20400 0.83446 1.04503 1.04843 1.22577 0.98386 0.87531 0.95785 1.77215 0.84692 1.21787 1.27042 1.48784 1.07686 1.02558 1.56052 1.22391 0.83422 0.95271 1.04766 1.17763 0.83276 0.82423 1.02241 1.91606 1.50139 1.71756 1.93812 1.19652 0.90640 0.95813 1.25621 1.16977 0.76119 0.84327 0.83261 1.90714 1.55989 1.65961 1.32476 1.47780 1.61420 1.16185 1.05836 1.21647 0.98235 0.80983 1.00768 1.22234 0.96525 1.01065 0.98196 1.21710 0.94648 0.96526 1.01788 1.21596 0.99604 0.97111 0.96803 1.21987 1.00778 0.94902 0.98225 1.21060 0.93466 0.89674 0.91198 0.94062 1.42530 1.86645 1.02219 1.05260 1.19486 1.38856 0.83701 0.92992 0.90786 1.25277 1.04444 1.00765 0.95438 1.69771 1.59109 1.33847 0.98782 0.85593 0.77746 0.82503 0.76978 1.21325 1.22597 1.19547 1.22340 0.99103 0.96393 0.84191 0.87909 0.89142 0.89861 0.90673 0.86125 0.86766 0.90020 0.89903 0.90329 0.88060 0.90522 0.91861 0.92507 0.94305 0.89928 0.93464 0.79233 0.94314 0.88523 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.86 10.31 71.23 0.73 -1.12 16 2 C 0.12 4.17 6.94 43.55 0.30 4.47 16 3 N -0.28 -10.18 12.49 -46.64 -0.58 -10.76 16 4 N -0.37 -12.63 3.36 -368.88 -1.24 -13.86 16 5 C 0.08 2.12 11.43 127.77 1.46 3.58 16 6 C 0.29 10.65 6.61 84.36 0.56 11.21 16 7 F -0.09 -3.40 16.27 44.97 0.73 -2.67 16 8 C -0.30 -10.83 3.93 -20.09 -0.08 -10.91 16 9 C 0.61 21.16 5.61 86.59 0.49 21.65 16 10 O -0.57 -22.36 16.53 -4.15 -0.07 -22.43 16 11 N -0.58 -17.28 1.69 -828.92 -1.40 -18.68 16 12 C 0.11 2.45 6.00 86.62 0.52 2.97 16 13 C -0.14 -2.82 5.45 30.57 0.17 -2.65 16 14 C -0.11 -2.36 5.75 30.88 0.18 -2.18 16 15 C -0.11 -3.20 5.40 30.74 0.17 -3.04 16 16 C -0.12 -3.86 4.97 30.68 0.15 -3.71 16 17 C 0.16 5.86 2.30 45.04 0.10 5.96 16 18 H 0.04 1.69 3.22 -2.39 -0.01 1.68 16 19 N -0.73 -34.19 5.13 -322.70 -1.65 -35.85 16 20 C -0.22 -11.36 9.90 84.03 0.83 -10.52 16 21 H 0.07 3.77 6.77 -2.91 -0.02 3.75 16 22 C -0.07 -3.68 5.50 84.86 0.47 -3.22 16 23 N -0.96 -56.72 13.06 21.65 0.28 -56.44 16 24 Si 0.94 44.88 29.55 68.60 2.03 46.90 16 25 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 26 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 27 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 28 C 0.10 3.44 4.61 86.07 0.40 3.84 16 29 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.08 1.99 7.89 -2.38 -0.02 1.97 16 32 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.11 2.34 8.14 -2.38 -0.02 2.32 16 35 H 0.08 2.07 6.73 -2.39 -0.02 2.06 16 36 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.08 1.73 3.35 -2.39 -0.01 1.72 16 38 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.06 1.35 7.85 -2.39 -0.02 1.33 16 41 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.04 1.29 5.38 -2.39 -0.01 1.27 16 43 H 0.08 2.35 5.47 -2.38 -0.01 2.33 16 44 H 0.05 1.65 8.14 -2.38 -0.02 1.64 16 45 H 0.38 18.99 7.80 -92.71 -0.72 18.27 16 46 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 47 H 0.10 2.84 6.07 -2.38 -0.01 2.83 16 48 H 0.06 2.09 7.41 -2.39 -0.02 2.07 16 Total: -1.00 -68.85 371.79 4.83 -64.03 By element: Atomic # 1 Polarization: 33.15 SS G_CDS: 0.29 Total: 33.43 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: 6.44 Total: 16.32 kcal Atomic # 7 Polarization: -131.00 SS G_CDS: -4.59 Total: -135.59 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.07 Total: -22.43 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.73 Total: -2.67 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -68.85 4.83 -64.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088419801.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.019 kcal (2) G-P(sol) polarization free energy of solvation -68.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds