Wall clock time and date at job start Tue Mar 31 2020 21:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81398 * 103.00121 * 2 1 4 4 C 1.50695 * 109.47378 * 179.97438 * 3 2 1 5 5 O 1.21275 * 120.00482 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00074 * 180.02562 * 4 3 2 7 7 C 1.46927 * 120.63139 * 359.72177 * 6 4 3 8 8 C 1.52759 * 109.00762 * 233.58568 * 7 6 4 9 9 C 1.53040 * 109.38462 * 305.58403 * 8 7 6 10 10 C 1.52996 * 109.46015 * 181.26366 * 9 8 7 11 11 H 1.08999 * 112.78331 * 316.43702 * 10 9 8 12 12 N 1.47304 * 113.52220 * 185.53124 * 10 9 8 13 13 C 1.36931 * 135.89269 * 91.35548 * 12 10 9 14 14 H 1.08003 * 119.99957 * 0.02562 * 13 12 10 15 15 C 1.38811 * 120.00257 * 180.02562 * 13 12 10 16 16 N 1.31622 * 119.99592 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00361 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46849 * 59.99814 * 17 15 13 19 19 H 1.48496 * 109.47353 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46575 * 300.00193 * 17 15 13 21 21 C 1.47290 * 88.21672 * 271.38279 * 12 10 9 22 22 C 1.52340 * 113.52820 * 87.35910 * 10 9 8 23 23 C 1.52626 * 122.02957 * 324.73459 * 22 10 9 24 24 C 1.54007 * 86.67198 * 207.82095 * 23 22 10 25 25 C 1.52621 * 122.03687 * 214.13180 * 22 10 9 26 26 C 1.53038 * 109.53536 * 61.24015 * 9 8 7 27 27 C 1.46924 * 120.63232 * 180.02562 * 6 4 3 28 28 H 1.09002 * 109.47149 * 299.99461 * 1 2 3 29 29 H 1.09009 * 109.47166 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47208 * 60.00351 * 1 2 3 31 31 H 1.09005 * 109.47294 * 300.00234 * 3 2 1 32 32 H 1.09001 * 109.47078 * 59.99662 * 3 2 1 33 33 H 1.08999 * 109.58269 * 353.41585 * 7 6 4 34 34 H 1.08995 * 109.58639 * 113.84336 * 7 6 4 35 35 H 1.09002 * 109.56532 * 185.55053 * 8 7 6 36 36 H 1.09002 * 109.36302 * 65.49714 * 8 7 6 37 37 H 1.08996 * 109.46113 * 301.22384 * 9 8 7 38 38 H 0.97007 * 119.99701 * 179.97438 * 16 15 13 39 39 H 1.09006 * 113.52737 * 88.61697 * 21 12 10 40 40 H 1.09004 * 113.52285 * 219.16311 * 21 12 10 41 41 H 1.08995 * 113.68415 * 322.26595 * 23 22 10 42 42 H 1.08998 * 113.67745 * 93.38059 * 23 22 10 43 43 H 1.09001 * 113.57106 * 269.87487 * 24 23 22 44 44 H 1.09004 * 113.56628 * 139.12635 * 24 23 22 45 45 H 1.09003 * 113.68095 * 266.62039 * 25 22 10 46 46 H 1.09007 * 113.67974 * 37.63430 * 25 22 10 47 47 H 1.09003 * 109.49895 * 178.68336 * 26 9 8 48 48 H 1.08999 * 109.52475 * 58.60325 * 26 9 8 49 49 H 1.09005 * 109.58586 * 246.15739 * 27 6 4 50 50 H 1.08996 * 109.58750 * 6.58002 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7194 1.9373 0.0006 5 8 4.4404 0.9622 0.0015 6 7 4.2574 3.1731 0.0013 7 6 3.3971 4.3642 -0.0048 8 6 3.8064 5.2676 -1.1666 9 6 5.3029 5.5733 -1.0695 10 6 5.7084 6.5036 -2.2144 11 1 5.2714 6.2127 -3.1697 12 7 7.1584 6.7537 -2.2833 13 6 8.2256 6.1813 -2.9224 14 1 8.0755 5.3243 -3.5624 15 6 9.5002 6.7024 -2.7479 16 7 9.6831 7.7465 -1.9675 17 14 10.9560 5.9220 -3.6204 18 1 10.7425 5.9806 -5.0888 19 1 12.1964 6.6595 -3.2702 20 1 11.0863 4.5051 -3.1952 21 6 6.9600 7.8875 -1.3643 22 6 5.5306 7.9813 -1.8893 23 6 4.3799 8.4869 -1.0234 24 6 4.4956 9.8114 -1.8007 25 6 5.1227 9.0002 -2.9498 26 6 6.0987 4.2697 -1.1655 27 6 5.7154 3.3548 0.0013 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 1.8031 2.2371 -0.8900 32 1 1.8031 2.2371 0.8900 33 1 2.3568 4.0628 -0.1271 34 1 3.5151 4.9049 0.9342 35 1 3.2413 6.1986 -1.1216 36 1 3.5990 4.7608 -2.1090 37 1 5.5135 6.0579 -0.1162 38 1 10.5740 8.1104 -1.8452 39 1 7.0195 7.6101 -0.3118 40 1 7.5717 8.7564 -1.6070 41 1 3.4406 7.9605 -1.1927 42 1 4.6333 8.5757 0.0330 43 1 5.1823 10.5252 -1.3457 44 1 3.5320 10.2533 -2.0544 45 1 5.9672 9.4976 -3.4269 46 1 4.3951 8.6188 -3.6664 47 1 7.1652 4.4903 -1.1198 48 1 5.8703 3.7719 -2.1079 49 1 6.0266 3.8114 0.9409 50 1 6.2041 2.3878 -0.1169 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093356301.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:31 Heat of formation + Delta-G solvation = 44.521115 kcal Electronic energy + Delta-G solvation = -28489.769594 eV Core-core repulsion = 24838.802265 eV Total energy + Delta-G solvation = -3650.967329 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.50447 -39.68740 -37.13578 -35.15548 -32.94378 -31.75393 -31.33947 -29.82326 -28.94077 -27.33813 -25.95440 -25.25131 -23.49741 -23.09419 -22.75427 -21.12205 -19.95950 -18.94730 -17.46234 -17.09941 -16.69311 -16.53429 -15.82627 -15.46500 -15.06588 -14.94523 -14.39148 -14.23615 -14.17727 -13.99876 -13.93230 -13.55365 -13.41044 -13.14755 -12.96333 -12.70602 -12.59521 -12.35416 -12.09043 -11.92725 -11.75369 -11.23112 -11.12465 -11.00184 -10.90468 -10.65637 -10.59744 -10.41471 -10.33188 -10.20415 -10.18649 -9.87319 -9.78786 -9.44386 -9.41284 -8.94545 -8.76710 -8.55429 -7.89352 -6.84415 -5.76364 -3.07135 1.22141 2.28170 2.51087 2.98735 3.40168 3.45237 3.45338 4.27524 4.43057 4.68058 4.75354 4.80517 4.82642 4.89961 4.91097 4.98750 5.09409 5.14057 5.20105 5.29329 5.37351 5.40420 5.43095 5.52114 5.62615 5.65751 5.76943 5.86370 5.96577 6.01215 6.03795 6.10534 6.16834 6.25705 6.27860 6.29793 6.36517 6.47833 6.58254 6.67184 6.85003 6.91610 6.95939 7.08350 7.24680 7.33719 7.35711 7.58575 7.99171 8.07301 9.05209 9.71888 10.66720 11.40852 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012364 B = 0.003231 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.095898 B = 8662.741318 C =10448.954173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.188 6.188 3 C -0.125 4.125 4 C 0.529 3.471 5 O -0.524 6.524 6 N -0.603 5.603 7 C 0.107 3.893 8 C -0.130 4.130 9 C -0.089 4.089 10 C 0.160 3.840 11 H 0.045 0.955 12 N -0.595 5.595 13 C -0.213 4.213 14 H 0.078 0.922 15 C -0.006 4.006 16 N -0.919 5.919 17 Si 0.907 3.093 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.285 1.285 21 C 0.182 3.818 22 C -0.123 4.123 23 C -0.128 4.128 24 C -0.138 4.138 25 C -0.107 4.107 26 C -0.119 4.119 27 C 0.113 3.887 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.253 0.747 39 H 0.024 0.976 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.056 0.944 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.096 0.904 48 H 0.056 0.944 49 H 0.066 0.934 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.048 -3.979 5.194 21.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.037 5.963 3 C -0.276 4.276 4 C 0.315 3.685 5 O -0.401 6.401 6 N -0.337 5.337 7 C -0.016 4.016 8 C -0.169 4.169 9 C -0.110 4.110 10 C 0.052 3.948 11 H 0.063 0.937 12 N -0.317 5.317 13 C -0.340 4.340 14 H 0.096 0.904 15 C -0.203 4.203 16 N -0.566 5.566 17 Si 0.738 3.262 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.212 1.212 21 C 0.056 3.944 22 C -0.124 4.124 23 C -0.166 4.166 24 C -0.176 4.176 25 C -0.144 4.144 26 C -0.157 4.157 27 C -0.008 4.008 28 H 0.094 0.906 29 H 0.122 0.878 30 H 0.095 0.905 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.042 0.958 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.115 0.885 48 H 0.075 0.925 49 H 0.084 0.916 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.558 -5.396 5.078 19.982 hybrid contribution -0.066 0.742 -0.368 0.831 sum -18.623 -4.654 4.710 19.765 Atomic orbital electron populations 1.23532 0.96059 1.06680 1.04814 1.87575 1.04310 1.06451 1.97992 1.23569 0.98264 0.98910 1.06814 1.19588 0.88681 0.83307 0.76959 1.90738 1.61889 1.38088 1.49360 1.48102 1.07968 1.04974 1.72647 1.21728 0.93543 0.86361 0.99950 1.21973 0.98044 0.99145 0.97696 1.21450 0.92392 0.96212 1.00958 1.21736 0.86796 0.91543 0.94726 0.93690 1.45608 1.01310 1.33227 1.51542 1.18812 0.84498 1.10204 1.20474 0.90401 1.24741 0.97117 0.98410 0.99997 1.69819 1.21311 1.24608 1.40842 0.86273 0.82235 0.78514 0.79208 1.21178 1.21655 1.21150 1.21735 0.88010 0.92531 0.92134 1.22949 0.96994 0.95291 0.97202 1.22718 0.98563 0.96686 0.98648 1.22809 0.99979 0.96544 0.98235 1.22399 0.99764 0.96563 0.95683 1.21808 1.02678 0.94420 0.96782 1.21761 0.78246 1.01406 0.99427 0.90560 0.87817 0.90513 0.87260 0.87381 0.90548 0.91097 0.90335 0.91882 0.91289 0.93694 0.95794 0.91383 0.90679 0.92014 0.90548 0.92530 0.91419 0.91072 0.88512 0.92491 0.91562 0.89302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 10.76 101.05 1.09 0.16 16 2 S -0.19 -2.11 21.52 -107.50 -2.31 -4.42 16 3 C -0.12 -1.22 4.77 36.00 0.17 -1.05 16 4 C 0.53 7.33 7.72 -10.99 -0.08 7.25 16 5 O -0.52 -9.45 15.28 5.56 0.08 -9.37 16 6 N -0.60 -7.79 2.98 -173.06 -0.52 -8.31 16 7 C 0.11 1.06 6.31 -3.93 -0.02 1.03 16 8 C -0.13 -1.50 5.27 -26.83 -0.14 -1.64 16 9 C -0.09 -1.37 1.55 -90.58 -0.14 -1.51 16 10 C 0.16 2.96 3.62 -71.50 -0.26 2.70 16 11 H 0.05 0.87 8.12 -51.93 -0.42 0.44 16 12 N -0.59 -14.05 3.02 -176.30 -0.53 -14.58 16 13 C -0.21 -5.66 9.95 -15.06 -0.15 -5.81 16 14 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 15 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 16 N -0.92 -26.56 11.52 55.49 0.64 -25.92 16 17 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 C 0.18 4.01 6.81 -7.50 -0.05 3.96 16 22 C -0.12 -2.12 1.07 -155.49 -0.17 -2.28 16 23 C -0.13 -1.71 6.90 -26.40 -0.18 -1.89 16 24 C -0.14 -1.84 8.08 -25.70 -0.21 -2.05 16 25 C -0.11 -1.70 7.90 -26.40 -0.21 -1.91 16 26 C -0.12 -2.01 5.17 -26.63 -0.14 -2.14 16 27 C 0.11 1.70 6.43 -3.73 -0.02 1.67 16 28 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 29 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 31 H 0.11 0.87 7.68 -51.92 -0.40 0.47 16 32 H 0.11 0.80 7.95 -51.92 -0.41 0.39 16 33 H 0.08 0.54 5.93 -51.93 -0.31 0.23 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.80 5.61 -51.93 -0.29 0.51 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.12 7.16 -51.93 -0.37 0.75 16 38 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.02 0.55 7.55 -51.93 -0.39 0.16 16 40 H 0.07 1.72 7.17 -51.93 -0.37 1.35 16 41 H 0.07 0.86 6.05 -51.93 -0.31 0.55 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.10 1.98 6.99 -51.93 -0.36 1.62 16 48 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 50 H 0.09 1.46 7.00 -51.93 -0.36 1.10 16 LS Contribution 394.05 15.07 5.94 5.94 Total: -1.00 -31.61 394.05 -10.97 -42.57 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -8.63 Total: 0.92 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -0.61 Total: -3.77 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: -0.41 Total: -48.81 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.08 Total: -9.37 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: -2.11 SS G_CDS: -2.31 Total: -4.42 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.61 -10.97 -42.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093356301.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.092 kcal (2) G-P(sol) polarization free energy of solvation -31.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds