Wall clock time and date at job start Tue Mar 31 2020 21:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81398 * 103.00121 * 2 1 4 4 C 1.50695 * 109.47378 * 179.97438 * 3 2 1 5 5 O 1.21275 * 120.00482 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00074 * 180.02562 * 4 3 2 7 7 C 1.46927 * 120.63139 * 359.72177 * 6 4 3 8 8 C 1.52759 * 109.00762 * 233.58568 * 7 6 4 9 9 C 1.53040 * 109.38462 * 305.58403 * 8 7 6 10 10 C 1.52996 * 109.46015 * 181.26366 * 9 8 7 11 11 H 1.08999 * 112.78331 * 316.43702 * 10 9 8 12 12 N 1.47304 * 113.52220 * 185.53124 * 10 9 8 13 13 C 1.36931 * 135.89269 * 91.35548 * 12 10 9 14 14 H 1.08003 * 119.99957 * 0.02562 * 13 12 10 15 15 C 1.38811 * 120.00257 * 180.02562 * 13 12 10 16 16 N 1.31622 * 119.99592 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00361 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46849 * 59.99814 * 17 15 13 19 19 H 1.48496 * 109.47353 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46575 * 300.00193 * 17 15 13 21 21 C 1.47290 * 88.21672 * 271.38279 * 12 10 9 22 22 C 1.52340 * 113.52820 * 87.35910 * 10 9 8 23 23 C 1.52626 * 122.02957 * 324.73459 * 22 10 9 24 24 C 1.54007 * 86.67198 * 207.82095 * 23 22 10 25 25 C 1.52621 * 122.03687 * 214.13180 * 22 10 9 26 26 C 1.53038 * 109.53536 * 61.24015 * 9 8 7 27 27 C 1.46924 * 120.63232 * 180.02562 * 6 4 3 28 28 H 1.09002 * 109.47149 * 299.99461 * 1 2 3 29 29 H 1.09009 * 109.47166 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47208 * 60.00351 * 1 2 3 31 31 H 1.09005 * 109.47294 * 300.00234 * 3 2 1 32 32 H 1.09001 * 109.47078 * 59.99662 * 3 2 1 33 33 H 1.08999 * 109.58269 * 353.41585 * 7 6 4 34 34 H 1.08995 * 109.58639 * 113.84336 * 7 6 4 35 35 H 1.09002 * 109.56532 * 185.55053 * 8 7 6 36 36 H 1.09002 * 109.36302 * 65.49714 * 8 7 6 37 37 H 1.08996 * 109.46113 * 301.22384 * 9 8 7 38 38 H 0.97007 * 119.99701 * 179.97438 * 16 15 13 39 39 H 1.09006 * 113.52737 * 88.61697 * 21 12 10 40 40 H 1.09004 * 113.52285 * 219.16311 * 21 12 10 41 41 H 1.08995 * 113.68415 * 322.26595 * 23 22 10 42 42 H 1.08998 * 113.67745 * 93.38059 * 23 22 10 43 43 H 1.09001 * 113.57106 * 269.87487 * 24 23 22 44 44 H 1.09004 * 113.56628 * 139.12635 * 24 23 22 45 45 H 1.09003 * 113.68095 * 266.62039 * 25 22 10 46 46 H 1.09007 * 113.67974 * 37.63430 * 25 22 10 47 47 H 1.09003 * 109.49895 * 178.68336 * 26 9 8 48 48 H 1.08999 * 109.52475 * 58.60325 * 26 9 8 49 49 H 1.09005 * 109.58586 * 246.15739 * 27 6 4 50 50 H 1.08996 * 109.58750 * 6.58002 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7194 1.9373 0.0006 5 8 4.4404 0.9622 0.0015 6 7 4.2574 3.1731 0.0013 7 6 3.3971 4.3642 -0.0048 8 6 3.8064 5.2676 -1.1666 9 6 5.3029 5.5733 -1.0695 10 6 5.7084 6.5036 -2.2144 11 1 5.2714 6.2127 -3.1697 12 7 7.1584 6.7537 -2.2833 13 6 8.2256 6.1813 -2.9224 14 1 8.0755 5.3243 -3.5624 15 6 9.5002 6.7024 -2.7479 16 7 9.6831 7.7465 -1.9675 17 14 10.9560 5.9220 -3.6204 18 1 10.7425 5.9806 -5.0888 19 1 12.1964 6.6595 -3.2702 20 1 11.0863 4.5051 -3.1952 21 6 6.9600 7.8875 -1.3643 22 6 5.5306 7.9813 -1.8893 23 6 4.3799 8.4869 -1.0234 24 6 4.4956 9.8114 -1.8007 25 6 5.1227 9.0002 -2.9498 26 6 6.0987 4.2697 -1.1655 27 6 5.7154 3.3548 0.0013 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 1.8031 2.2371 -0.8900 32 1 1.8031 2.2371 0.8900 33 1 2.3568 4.0628 -0.1271 34 1 3.5151 4.9049 0.9342 35 1 3.2413 6.1986 -1.1216 36 1 3.5990 4.7608 -2.1090 37 1 5.5135 6.0579 -0.1162 38 1 10.5740 8.1104 -1.8452 39 1 7.0195 7.6101 -0.3118 40 1 7.5717 8.7564 -1.6070 41 1 3.4406 7.9605 -1.1927 42 1 4.6333 8.5757 0.0330 43 1 5.1823 10.5252 -1.3457 44 1 3.5320 10.2533 -2.0544 45 1 5.9672 9.4976 -3.4269 46 1 4.3951 8.6188 -3.6664 47 1 7.1652 4.4903 -1.1198 48 1 5.8703 3.7719 -2.1079 49 1 6.0266 3.8114 0.9409 50 1 6.2041 2.3878 -0.1169 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093356301.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:30 Heat of formation + Delta-G solvation = 26.535687 kcal Electronic energy + Delta-G solvation = -28490.549500 eV Core-core repulsion = 24838.802265 eV Total energy + Delta-G solvation = -3651.747235 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.81777 -40.89731 -38.29456 -36.61487 -34.44561 -33.38629 -32.48913 -30.67892 -29.51390 -29.19417 -27.29281 -26.48089 -24.97631 -24.55177 -23.96780 -22.43588 -21.28577 -20.04550 -18.79847 -18.53097 -18.08141 -17.59193 -16.91738 -16.76403 -16.46713 -16.21816 -15.91298 -15.65124 -15.21598 -15.06292 -14.82225 -14.66658 -14.54672 -14.25230 -14.09929 -13.82947 -13.65286 -13.42227 -13.33550 -13.14143 -12.96840 -12.88969 -12.80466 -12.45706 -12.30712 -12.18950 -12.01511 -11.92296 -11.81305 -11.59601 -11.19253 -11.15730 -10.99054 -10.84664 -10.78495 -10.70298 -10.38662 -9.69590 -8.79376 -8.69687 -7.87894 -5.16726 0.51455 1.41374 1.43322 1.48960 1.50060 1.66828 1.99758 2.46359 3.31065 3.39370 3.41690 3.64905 3.85289 3.90659 4.01055 4.04491 4.08709 4.12541 4.19376 4.22370 4.30033 4.36543 4.41168 4.42054 4.45306 4.63163 4.72771 4.75939 4.78987 4.81953 4.90745 4.95792 4.96769 4.98477 5.04301 5.16729 5.21716 5.24905 5.26815 5.27814 5.35540 5.53852 5.57550 5.63036 5.70220 5.74516 5.78180 6.00492 6.34795 6.96189 7.05399 7.65922 8.69602 9.29609 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012364 B = 0.003231 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.095898 B = 8662.741318 C =10448.954173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.279 6.279 3 C -0.103 4.103 4 C 0.520 3.480 5 O -0.577 6.577 6 N -0.601 5.601 7 C 0.104 3.896 8 C -0.121 4.121 9 C -0.078 4.078 10 C 0.162 3.838 11 H 0.040 0.960 12 N -0.624 5.624 13 C -0.208 4.208 14 H 0.074 0.926 15 C -0.066 4.066 16 N -0.951 5.951 17 Si 0.964 3.036 18 H -0.279 1.279 19 H -0.295 1.295 20 H -0.283 1.283 21 C 0.180 3.820 22 C -0.114 4.114 23 C -0.109 4.109 24 C -0.126 4.126 25 C -0.114 4.114 26 C -0.108 4.108 27 C 0.123 3.877 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.245 0.755 39 H 0.013 0.987 40 H 0.025 0.975 41 H 0.112 0.888 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.090 0.910 45 H 0.032 0.968 46 H 0.092 0.908 47 H 0.049 0.951 48 H 0.041 0.959 49 H 0.072 0.928 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.187 -3.500 5.782 26.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.055 6.055 3 C -0.253 4.253 4 C 0.308 3.692 5 O -0.457 6.457 6 N -0.334 5.334 7 C -0.017 4.017 8 C -0.159 4.159 9 C -0.099 4.099 10 C 0.055 3.945 11 H 0.058 0.942 12 N -0.346 5.346 13 C -0.336 4.336 14 H 0.092 0.908 15 C -0.259 4.259 16 N -0.601 5.601 17 Si 0.794 3.206 18 H -0.205 1.205 19 H -0.222 1.222 20 H -0.209 1.209 21 C 0.055 3.945 22 C -0.115 4.115 23 C -0.146 4.146 24 C -0.163 4.163 25 C -0.152 4.152 26 C -0.147 4.147 27 C 0.000 4.000 28 H 0.113 0.887 29 H 0.128 0.872 30 H 0.111 0.889 31 H 0.156 0.844 32 H 0.160 0.840 33 H 0.138 0.862 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.030 0.970 40 H 0.043 0.957 41 H 0.130 0.870 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.109 0.891 45 H 0.051 0.949 46 H 0.111 0.889 47 H 0.068 0.932 48 H 0.060 0.940 49 H 0.091 0.909 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.767 -4.907 5.661 24.920 hybrid contribution 1.504 0.566 -0.591 1.712 sum -22.263 -4.341 5.070 23.242 Atomic orbital electron populations 1.23541 0.90979 1.07663 1.06450 1.87957 1.09944 1.09359 1.98285 1.23494 0.94664 0.97480 1.09665 1.20373 0.90513 0.82592 0.75683 1.90723 1.63558 1.39853 1.51559 1.48166 1.07002 1.06170 1.72057 1.22047 0.94953 0.84768 0.99921 1.21929 0.94366 1.01018 0.98616 1.21307 0.95509 0.94074 0.99050 1.21957 0.83495 0.93400 0.95637 0.94158 1.45907 1.03035 1.34108 1.51587 1.19069 0.85756 1.09242 1.19578 0.90821 1.25430 0.99487 0.99408 1.01586 1.70001 1.20946 1.26234 1.42918 0.85355 0.79292 0.77565 0.78421 1.20527 1.22162 1.20901 1.21615 0.91092 0.90476 0.91360 1.22803 0.95342 0.94413 0.98981 1.22730 0.97661 0.95991 0.98255 1.22747 1.01042 0.96351 0.96207 1.22531 0.99395 0.96681 0.96561 1.21606 1.00247 0.95894 0.96948 1.21420 0.80415 0.99568 0.98609 0.88715 0.87220 0.88943 0.84439 0.83970 0.86205 0.89298 0.87377 0.92027 0.91685 0.94623 0.96964 0.95703 0.86995 0.91309 0.91595 0.89106 0.94871 0.88926 0.93185 0.94038 0.90926 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 10.76 113.37 1.22 0.12 16 2 S -0.28 -5.78 21.52 -56.49 -1.22 -7.00 16 3 C -0.10 -1.61 4.77 71.23 0.34 -1.27 16 4 C 0.52 13.48 7.72 87.66 0.68 14.16 16 5 O -0.58 -21.12 15.28 -3.01 -0.05 -21.16 16 6 N -0.60 -14.15 2.98 -819.84 -2.44 -16.59 16 7 C 0.10 1.51 6.31 86.22 0.54 2.05 16 8 C -0.12 -2.24 5.27 30.53 0.16 -2.07 16 9 C -0.08 -2.31 1.55 -10.77 -0.02 -2.33 16 10 C 0.16 5.90 3.62 42.24 0.15 6.06 16 11 H 0.04 1.51 8.12 -2.39 -0.02 1.49 16 12 N -0.62 -30.76 3.02 -711.68 -2.15 -32.90 16 13 C -0.21 -11.63 9.95 84.03 0.84 -10.79 16 14 H 0.07 4.06 7.83 -2.91 -0.02 4.03 16 15 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 16 N -0.95 -58.25 11.52 21.65 0.25 -58.00 16 17 Si 0.96 47.29 29.55 68.60 2.03 49.32 16 18 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 19 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 20 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 21 C 0.18 8.31 6.81 83.71 0.57 8.88 16 22 C -0.11 -3.80 1.07 -52.81 -0.06 -3.86 16 23 C -0.11 -2.43 6.90 30.81 0.21 -2.22 16 24 C -0.13 -2.93 8.08 31.26 0.25 -2.68 16 25 C -0.11 -3.48 7.90 30.81 0.24 -3.23 16 26 C -0.11 -3.78 5.17 30.66 0.16 -3.62 16 27 C 0.12 3.73 6.43 86.35 0.56 4.29 16 28 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.14 1.40 7.68 -2.39 -0.02 1.38 16 32 H 0.14 1.28 7.95 -2.39 -0.02 1.26 16 33 H 0.12 0.80 5.93 -2.39 -0.01 0.79 16 34 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.11 1.43 5.61 -2.39 -0.01 1.42 16 36 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 2.00 7.16 -2.39 -0.02 1.98 16 38 H 0.24 14.74 8.31 -92.70 -0.77 13.97 16 39 H 0.01 0.60 7.55 -2.38 -0.02 0.58 16 40 H 0.02 1.34 7.17 -2.38 -0.02 1.32 16 41 H 0.11 1.77 6.05 -2.39 -0.01 1.75 16 42 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 45 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 47 H 0.05 2.20 6.99 -2.39 -0.02 2.18 16 48 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 49 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 50 H 0.06 2.28 7.00 -2.39 -0.02 2.27 16 Total: -1.00 -78.54 394.05 3.65 -74.89 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.91 Total: 11.33 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 6.32 Total: 0.12 kcal Atomic # 7 Polarization: -103.16 SS G_CDS: -4.34 Total: -107.50 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.05 Total: -21.16 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Atomic # 16 Polarization: -5.78 SS G_CDS: -1.22 Total: -7.00 kcal Total: -78.54 3.65 -74.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093356301.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.428 kcal (2) G-P(sol) polarization free energy of solvation -78.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds