Wall clock time and date at job start Tue Mar 31 2020 21:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99841 * 2 1 4 4 H 1.48495 * 109.47053 * 269.99589 * 3 2 1 5 5 H 1.48502 * 109.47337 * 29.99835 * 3 2 1 6 6 H 1.48500 * 109.46664 * 149.99876 * 3 2 1 7 7 C 1.38808 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99680 * 0.02562 * 7 2 1 9 9 N 1.36929 * 119.99996 * 180.02562 * 7 2 1 10 10 C 1.46507 * 119.99938 * 173.80662 * 9 7 2 11 11 C 1.52998 * 109.47178 * 63.15263 * 10 9 7 12 12 N 1.46494 * 109.47309 * 54.66574 * 11 10 9 13 13 C 1.34778 * 120.00434 * 176.26278 * 12 11 10 14 14 O 1.21606 * 119.99685 * 359.97438 * 13 12 11 15 15 C 1.47423 * 120.00300 * 180.02562 * 13 12 11 16 16 C 1.41285 * 126.41752 * 0.02562 * 15 13 12 17 17 N 1.30442 * 108.02747 * 179.73620 * 16 15 13 18 18 N 1.39940 * 108.89597 * 0.02562 * 17 16 15 19 19 C 1.46499 * 125.75398 * 179.97438 * 18 17 16 20 20 C 1.53000 * 109.47287 * 305.02403 * 19 18 17 21 21 F 1.39900 * 109.47435 * 180.02562 * 20 19 18 22 22 C 1.34254 * 108.49171 * 359.97438 * 18 17 16 23 23 C 1.53003 * 109.47182 * 183.15397 * 10 9 7 24 24 C 1.52997 * 109.46863 * 59.99644 * 23 10 9 25 25 C 1.53001 * 109.47163 * 60.00377 * 24 23 10 26 26 C 1.53003 * 109.46923 * 299.99586 * 25 24 23 27 27 C 1.52998 * 109.47174 * 60.00012 * 26 25 24 28 28 H 0.97002 * 119.99745 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00613 * 353.79806 * 9 7 2 30 30 H 1.09004 * 109.46989 * 294.66384 * 11 10 9 31 31 H 1.09003 * 109.47253 * 174.66759 * 11 10 9 32 32 H 0.97000 * 120.00412 * 356.26043 * 12 11 10 33 33 H 1.08002 * 125.98783 * 359.74168 * 16 15 13 34 34 H 1.09003 * 109.47003 * 65.02211 * 19 18 17 35 35 H 1.08998 * 109.47290 * 185.02186 * 19 18 17 36 36 H 1.09008 * 109.46723 * 300.00288 * 20 19 18 37 37 H 1.08998 * 109.47617 * 59.99470 * 20 19 18 38 38 H 1.08000 * 126.29123 * 180.02562 * 22 18 17 39 39 H 1.09001 * 109.46880 * 179.97438 * 23 10 9 40 40 H 1.09002 * 109.46702 * 300.00155 * 23 10 9 41 41 H 1.09001 * 109.47589 * 299.99830 * 24 23 10 42 42 H 1.09003 * 109.46729 * 179.97438 * 24 23 10 43 43 H 1.09000 * 109.47057 * 179.97438 * 25 24 23 44 44 H 1.08995 * 109.47116 * 59.99688 * 25 24 23 45 45 H 1.09001 * 109.46880 * 299.99966 * 26 25 24 46 46 H 1.08996 * 109.46952 * 180.02562 * 26 25 24 47 47 H 1.08995 * 109.47143 * 179.97438 * 27 26 25 48 48 H 1.09003 * 109.46826 * 59.99553 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1120 -2.4635 0.1385 11 6 3.8033 -3.3655 -1.0581 12 7 4.0951 -2.6458 -2.3003 13 6 3.9694 -3.2717 -3.4873 14 8 3.6142 -4.4341 -3.5271 15 6 4.2635 -2.5476 -4.7373 16 6 4.6847 -1.2036 -4.8488 17 7 4.8452 -0.9347 -6.1151 18 7 4.5383 -2.0767 -6.8634 19 6 4.5939 -2.1839 -8.3234 20 6 3.7328 -1.0846 -8.9487 21 9 3.7854 -1.1873 -10.3429 22 6 4.1843 -3.0575 -6.0177 23 6 5.6144 -2.1780 0.1879 24 6 5.9230 -1.2760 1.3845 25 6 5.4943 -1.9766 2.6753 26 6 3.9920 -2.2620 2.6260 27 6 3.6833 -3.1640 1.4293 28 1 -0.4850 0.8401 -0.0004 29 1 3.8647 -0.3670 -0.0897 30 1 2.7502 -3.6461 -1.0394 31 1 4.4195 -4.2631 -1.0050 32 1 4.3787 -1.7187 -2.2686 33 1 4.8457 -0.5189 -4.0293 34 1 5.6255 -2.0712 -8.6570 35 1 4.2173 -3.1595 -8.6307 36 1 2.7012 -1.1973 -8.6151 37 1 4.1093 -0.1090 -8.6414 38 1 3.8916 -4.0609 -6.2893 39 1 6.1593 -3.1165 0.2906 40 1 5.9198 -1.6788 -0.7317 41 1 5.3781 -0.3375 1.2822 42 1 6.9934 -1.0730 1.4199 43 1 5.7146 -1.3341 3.5278 44 1 6.0393 -2.9150 2.7776 45 1 3.4471 -1.3235 2.5237 46 1 3.6865 -2.7607 3.5457 47 1 2.6131 -3.3677 1.3944 48 1 4.2283 -4.1025 1.5316 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115610077.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:38 Heat of formation + Delta-G solvation = -31.260151 kcal Electronic energy + Delta-G solvation = -30053.374422 eV Core-core repulsion = 25865.200546 eV Total energy + Delta-G solvation = -4188.173876 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.80112 -42.42126 -40.76935 -39.54383 -35.87492 -35.30560 -34.95920 -33.04633 -31.57539 -31.55513 -30.96922 -29.96079 -26.80600 -25.37034 -24.79307 -23.86097 -23.24321 -21.90407 -21.59730 -20.95177 -19.77134 -19.67694 -19.04177 -17.52407 -17.42279 -16.89262 -16.68871 -16.43897 -16.27889 -16.20423 -15.99259 -15.54315 -15.44052 -15.07559 -14.92547 -14.86408 -14.47425 -14.23008 -13.99505 -13.88602 -13.72902 -13.49086 -13.28062 -12.91450 -12.79808 -12.66135 -12.61609 -12.33081 -12.24700 -12.06994 -11.86534 -11.82288 -11.64963 -11.29707 -11.13152 -10.93463 -10.70888 -10.68887 -10.65046 -10.02174 -9.60533 -9.20550 -7.89840 -5.22665 0.49138 1.11607 1.22619 1.41817 1.45433 1.52864 2.43062 2.56778 2.57519 3.13890 3.41010 3.56120 3.60162 3.73883 3.76388 3.92877 3.95757 3.98064 4.09880 4.12582 4.16173 4.24201 4.40088 4.48187 4.51177 4.65239 4.68889 4.75378 4.75703 4.81037 4.82413 4.93579 4.98974 5.09823 5.19544 5.25531 5.33384 5.45828 5.46403 5.52064 5.60764 5.69830 5.76676 5.77064 5.94109 6.33450 6.42107 6.76987 7.20921 7.40606 7.94353 8.15202 9.32239 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.012325 B = 0.003159 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.221991 B = 8860.035680 C = 9936.082475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.990 5.990 2 C -0.064 4.064 3 Si 0.942 3.058 4 H -0.279 1.279 5 H -0.312 1.312 6 H -0.243 1.243 7 C -0.194 4.194 8 H 0.050 0.950 9 N -0.730 5.730 10 C 0.196 3.804 11 C 0.126 3.874 12 N -0.694 5.694 13 C 0.587 3.413 14 O -0.600 6.600 15 C -0.310 4.310 16 C 0.088 3.912 17 N -0.315 5.315 18 N -0.360 5.360 19 C 0.100 3.900 20 C 0.055 3.945 21 F -0.215 7.215 22 C 0.140 3.860 23 C -0.111 4.111 24 C -0.116 4.116 25 C -0.109 4.109 26 C -0.108 4.108 27 C -0.114 4.114 28 H 0.251 0.749 29 H 0.367 0.633 30 H 0.025 0.975 31 H 0.071 0.929 32 H 0.405 0.595 33 H 0.203 0.797 34 H 0.114 0.886 35 H 0.141 0.859 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.212 0.788 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.045 0.955 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.075 0.925 45 H 0.041 0.959 46 H 0.055 0.945 47 H 0.032 0.968 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.192 -4.332 -10.627 20.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.642 5.642 2 C -0.255 4.255 3 Si 0.770 3.230 4 H -0.206 1.206 5 H -0.240 1.240 6 H -0.167 1.167 7 C -0.325 4.325 8 H 0.068 0.932 9 N -0.373 5.373 10 C 0.106 3.894 11 C 0.000 4.000 12 N -0.343 5.343 13 C 0.376 3.624 14 O -0.483 6.483 15 C -0.324 4.324 16 C -0.100 4.100 17 N -0.135 5.135 18 N -0.138 5.138 19 C -0.021 4.021 20 C -0.001 4.001 21 F -0.196 7.196 22 C -0.012 4.012 23 C -0.149 4.149 24 C -0.154 4.154 25 C -0.147 4.147 26 C -0.146 4.146 27 C -0.154 4.154 28 H 0.060 0.940 29 H 0.201 0.799 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.241 0.759 33 H 0.220 0.780 34 H 0.133 0.867 35 H 0.159 0.841 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.229 0.771 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.100 0.900 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.060 0.940 46 H 0.074 0.926 47 H 0.050 0.950 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 17.111 -4.314 -11.665 21.154 hybrid contribution -0.906 1.006 0.694 1.521 sum 16.205 -3.308 -10.971 19.847 Atomic orbital electron populations 1.69902 1.07360 1.25947 1.60977 1.25362 0.95719 1.00697 1.03695 0.85613 0.79059 0.80377 0.77928 1.20571 1.24014 1.16725 1.18720 0.82524 0.92537 1.38761 0.93166 1.42710 1.02092 1.04149 1.88387 1.20002 0.92274 0.85627 0.91544 1.21674 0.98887 0.95142 0.84319 1.45459 1.67824 1.16027 1.04997 1.17554 0.76169 0.85358 0.83368 1.90702 1.50868 1.18628 1.88092 1.20280 1.21896 0.96602 0.93662 1.24355 0.95708 0.94830 0.95102 1.77111 1.24743 1.07368 1.04238 1.48463 1.50079 1.08040 1.07258 1.22592 1.04148 1.02787 0.72546 1.22126 1.02134 1.00810 0.74984 1.92786 1.97960 1.97573 1.31256 1.23309 0.93579 0.95811 0.88484 1.21733 0.92920 1.01324 0.98937 1.21508 1.01160 0.98224 0.94467 1.21475 0.94804 1.00905 0.97473 1.21326 0.97087 0.99403 0.96779 1.21749 0.99865 0.98458 0.95279 0.94048 0.79901 0.95611 0.91118 0.75886 0.77991 0.86750 0.84145 0.89827 0.89582 0.77143 0.89403 0.91097 0.93612 0.90048 0.91967 0.90655 0.93969 0.92637 0.94960 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.61 13.97 21.65 0.30 -62.31 16 2 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16 3 Si 0.94 43.11 27.68 68.60 1.90 45.01 16 4 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 5 H -0.31 -15.24 7.11 99.48 0.71 -14.53 16 6 H -0.24 -9.71 6.61 99.48 0.66 -9.05 16 7 C -0.19 -10.11 9.18 84.03 0.77 -9.34 16 8 H 0.05 3.01 7.01 -2.91 -0.02 2.99 16 9 N -0.73 -29.03 3.19 -303.33 -0.97 -30.00 16 10 C 0.20 6.31 0.41 3.60 0.00 6.31 16 11 C 0.13 4.38 4.37 86.38 0.38 4.76 16 12 N -0.69 -22.53 5.08 -466.38 -2.37 -24.90 16 13 C 0.59 19.94 7.81 86.66 0.68 20.62 16 14 O -0.60 -24.19 16.90 -4.05 -0.07 -24.26 16 15 C -0.31 -8.48 6.13 -20.15 -0.12 -8.60 16 16 C 0.09 2.17 11.50 85.65 0.99 3.15 16 17 N -0.31 -7.47 12.33 -56.28 -0.69 -8.17 16 18 N -0.36 -6.77 3.65 -346.30 -1.26 -8.03 16 19 C 0.10 1.09 6.94 86.38 0.60 1.69 16 20 C 0.06 0.73 7.73 71.98 0.56 1.28 16 21 F -0.21 -3.42 17.36 44.97 0.78 -2.64 16 22 C 0.14 2.99 11.25 84.28 0.95 3.94 16 23 C -0.11 -2.67 4.65 30.59 0.14 -2.53 16 24 C -0.12 -2.70 5.75 30.59 0.18 -2.53 16 25 C -0.11 -2.57 5.92 30.60 0.18 -2.39 16 26 C -0.11 -3.34 5.77 30.59 0.18 -3.17 16 27 C -0.11 -3.73 4.51 30.59 0.14 -3.59 16 28 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 29 H 0.37 13.93 4.57 -92.71 -0.42 13.51 16 30 H 0.03 1.11 7.51 -2.38 -0.02 1.09 16 31 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.40 11.87 6.35 -92.71 -0.59 11.29 16 33 H 0.20 4.20 7.50 -2.91 -0.02 4.17 16 34 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.14 0.74 8.06 -2.39 -0.02 0.72 16 36 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.21 3.39 8.06 -2.91 -0.02 3.36 16 39 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.07 1.55 7.29 -2.39 -0.02 1.54 16 41 H 0.05 1.27 6.93 -2.39 -0.02 1.25 16 42 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.04 1.61 7.60 -2.39 -0.02 1.59 16 46 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.03 1.28 7.23 -2.39 -0.02 1.26 16 48 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -75.14 386.24 3.61 -71.53 By element: Atomic # 1 Polarization: 37.38 SS G_CDS: -0.08 Total: 37.30 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 6.07 Total: 6.47 kcal Atomic # 7 Polarization: -128.42 SS G_CDS: -4.99 Total: -133.41 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.07 Total: -24.26 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.78 Total: -2.64 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.90 Total: 45.01 kcal Total: -75.14 3.61 -71.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115610077.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.268 kcal (2) G-P(sol) polarization free energy of solvation -75.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds