Wall clock time and date at job start Tue Mar 31 2020 22:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50691 * 120.00011 * 2 1 4 4 N 1.46495 * 109.47246 * 125.00101 * 3 2 1 5 5 C 1.36738 * 127.13740 * 95.09900 * 4 3 2 6 6 C 1.50702 * 126.34854 * 359.96371 * 5 4 3 7 7 C 1.53000 * 109.47086 * 270.01775 * 6 5 4 8 8 H 1.08999 * 109.47027 * 55.00306 * 7 6 5 9 9 O 1.42897 * 109.47627 * 294.99848 * 7 6 5 10 10 C 1.50705 * 109.47218 * 174.99517 * 7 6 5 11 11 H 1.08006 * 119.99664 * 0.02562 * 10 7 6 12 12 C 1.37872 * 120.00189 * 179.97438 * 10 7 6 13 13 N 1.31517 * 120.00043 * 0.02562 * 12 10 7 14 14 Si 1.86798 * 119.99962 * 180.02562 * 12 10 7 15 15 H 1.48503 * 109.47069 * 60.00719 * 14 12 10 16 16 H 1.48501 * 109.47136 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47504 * 300.00560 * 14 12 10 18 18 N 1.30300 * 107.30796 * 180.02562 * 5 4 3 19 19 N 1.28529 * 110.05241 * 359.97438 * 18 5 4 20 20 C 1.31222 * 109.85762 * 0.02562 * 19 18 5 21 21 N 1.38578 * 126.46855 * 180.02562 * 20 19 18 22 22 C 1.46854 * 111.00080 * 64.09606 * 21 20 19 23 23 C 1.53035 * 109.52234 * 174.15486 * 22 21 20 24 24 C 1.53122 * 109.27682 * 59.18140 * 23 22 21 25 25 C 1.52996 * 109.52474 * 182.43807 * 24 23 22 26 26 F 1.39905 * 109.52420 * 62.24586 * 24 23 22 27 27 C 1.53123 * 109.16238 * 302.34381 * 24 23 22 28 28 C 1.46847 * 111.00309 * 299.88217 * 21 20 19 29 29 H 1.08003 * 120.00351 * 180.02562 * 1 2 3 30 30 H 1.08005 * 120.00005 * 0.02562 * 1 2 3 31 31 H 1.07994 * 119.99552 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.47558 * 4.99782 * 3 2 1 33 33 H 1.09009 * 109.47279 * 244.99916 * 3 2 1 34 34 H 1.08996 * 109.47033 * 30.01710 * 6 5 4 35 35 H 1.09001 * 109.47359 * 150.02108 * 6 5 4 36 36 H 0.96697 * 113.99547 * 300.00726 * 9 7 6 37 37 H 0.96998 * 119.99945 * 179.97438 * 13 12 10 38 38 H 1.08992 * 109.46020 * 294.17638 * 22 21 20 39 39 H 1.08998 * 109.45971 * 54.14234 * 22 21 20 40 40 H 1.09002 * 109.50660 * 299.24242 * 23 22 21 41 41 H 1.08997 * 109.53600 * 179.13640 * 23 22 21 42 42 H 1.09002 * 109.47385 * 179.68275 * 25 24 23 43 43 H 1.09000 * 109.47029 * 299.68188 * 25 24 23 44 44 H 1.09006 * 109.47274 * 59.68018 * 25 24 23 45 45 H 1.09004 * 109.49993 * 297.71559 * 27 24 23 46 46 H 1.08995 * 109.53804 * 177.61485 * 27 24 23 47 47 H 1.08995 * 109.45907 * 305.86056 * 28 21 20 48 48 H 1.08998 * 109.45757 * 65.83949 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3318 1.1314 5 6 4.3178 0.9906 1.1197 6 6 5.1058 0.5097 -0.0715 7 6 5.0237 -1.0158 -0.1552 8 1 3.9780 -1.3229 -0.1731 9 8 5.6697 -1.5908 0.9824 10 6 5.7073 -1.4874 -1.4128 11 1 6.1558 -0.7707 -2.0849 12 6 5.7610 -2.8338 -1.7048 13 7 5.2153 -3.7065 -0.8861 14 14 6.6089 -3.4184 -3.2632 15 1 8.0335 -2.9996 -3.2385 16 1 6.5292 -4.8990 -3.3445 17 1 5.9379 -2.8213 -4.4457 18 7 4.7717 1.1570 2.3297 19 7 3.8318 1.5774 3.0990 20 6 2.7186 1.7023 2.4155 21 7 1.4950 2.1304 2.9052 22 6 1.5695 3.5239 3.3625 23 6 0.1728 4.0074 3.7591 24 6 -0.3738 3.1129 4.8752 25 6 -1.7943 3.5536 5.2342 26 9 0.4482 3.2169 6.0025 27 6 -0.3958 1.6607 4.3902 28 6 1.0175 1.2452 3.9752 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6213 1.4025 -0.9314 34 1 4.6925 0.9462 -0.9807 35 1 6.1475 0.8121 0.0358 36 1 6.6051 -1.3592 1.0622 37 1 5.2528 -4.6537 -1.0917 38 1 2.2344 3.5884 4.2238 39 1 1.9557 4.1499 2.5581 40 1 -0.4892 3.9562 2.8946 41 1 0.2302 5.0367 4.1130 42 1 -2.1847 2.9127 6.0248 43 1 -1.7777 4.5873 5.5794 44 1 -2.4326 3.4746 4.3541 45 1 -1.0666 1.5726 3.5356 46 1 -0.7441 1.0130 5.1946 47 1 1.0028 0.2163 3.6158 48 1 1.6848 1.3206 4.8337 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121629750.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:37 Heat of formation + Delta-G solvation = 0.372048 kcal Electronic energy + Delta-G solvation = -30776.684351 eV Core-core repulsion = 26589.882150 eV Total energy + Delta-G solvation = -4186.802201 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -47.87652 -42.56641 -38.76709 -36.19119 -35.77552 -34.36925 -32.55920 -32.16856 -31.33566 -31.15239 -29.02502 -27.42125 -26.54432 -25.25389 -23.68762 -23.13115 -21.72957 -21.00142 -20.64401 -19.72026 -19.42146 -17.53847 -16.95406 -16.40897 -16.07642 -15.74019 -15.51087 -15.41179 -15.02418 -14.79901 -14.62200 -14.36383 -14.08613 -13.74960 -13.63944 -13.16958 -13.08026 -12.83105 -12.70817 -12.50516 -12.44540 -12.23779 -12.21669 -12.13118 -11.53633 -11.43129 -11.28438 -11.16620 -11.07376 -10.87427 -10.80086 -10.65712 -10.49634 -10.24201 -10.06388 -9.78386 -9.48716 -9.28352 -8.74647 -8.64944 -8.59934 -8.03770 -6.06884 -4.26896 1.96807 2.19310 2.72413 3.25104 3.30517 3.31312 3.34579 3.76529 4.11889 4.19813 4.32714 4.33152 4.42274 4.78302 4.82138 4.87187 4.95117 5.01183 5.09424 5.15830 5.18734 5.20405 5.23900 5.29178 5.44635 5.47273 5.50902 5.51844 5.59358 5.67703 5.74274 5.77296 5.81195 5.90710 6.07985 6.15532 6.28995 6.32678 6.42506 6.60297 6.64515 6.68387 6.71791 6.94569 7.49498 7.59282 7.75920 8.06489 8.75438 9.21709 9.37593 9.53246 10.96968 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.022031 B = 0.002860 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.653011 B = 9788.466194 C =10218.138977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.168 4.168 3 C 0.144 3.856 4 N -0.462 5.462 5 C 0.221 3.779 6 C -0.066 4.066 7 C 0.242 3.758 8 H 0.053 0.947 9 O -0.558 6.558 10 C -0.576 4.576 11 H 0.058 0.942 12 C 0.081 3.919 13 N -0.857 5.857 14 Si 0.891 3.109 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.276 1.276 18 N -0.288 5.288 19 N -0.310 5.310 20 C 0.322 3.678 21 N -0.457 5.457 22 C 0.064 3.936 23 C -0.132 4.132 24 C 0.113 3.887 25 C -0.170 4.170 26 F -0.207 7.207 27 C -0.132 4.132 28 C 0.067 3.933 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.123 0.877 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.349 0.651 37 H 0.262 0.738 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.084 0.916 47 H 0.082 0.918 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.995 14.763 5.528 22.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.022 3.978 4 N -0.154 5.154 5 C -0.046 4.046 6 C -0.107 4.107 7 C 0.183 3.817 8 H 0.070 0.930 9 O -0.360 6.360 10 C -0.614 4.614 11 H 0.076 0.924 12 C -0.126 4.126 13 N -0.492 5.492 14 Si 0.718 3.282 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.202 1.202 18 N -0.128 5.128 19 N -0.154 5.154 20 C -0.034 4.034 21 N -0.183 5.183 22 C -0.063 4.063 23 C -0.170 4.170 24 C 0.095 3.905 25 C -0.228 4.228 26 F -0.188 7.188 27 C -0.171 4.171 28 C -0.061 4.061 29 H 0.120 0.880 30 H 0.115 0.885 31 H 0.141 0.859 32 H 0.114 0.886 33 H 0.121 0.879 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.193 0.807 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.109 0.891 46 H 0.102 0.898 47 H 0.101 0.899 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.009 14.348 6.486 22.455 hybrid contribution 0.560 -0.241 -1.502 1.621 sum -15.450 14.106 4.984 21.506 Atomic orbital electron populations 1.23799 0.95414 1.01896 0.99372 1.23206 0.96382 0.98451 1.00603 1.20861 0.91736 0.97358 0.87894 1.46319 1.10232 1.49736 1.09147 1.25350 0.81317 0.99482 0.98430 1.21267 0.98117 1.02100 0.89194 1.19284 0.94691 0.82417 0.85318 0.92974 1.86581 1.25456 1.75835 1.48130 1.21561 1.39828 0.92586 1.07431 0.92363 1.25024 0.94495 0.96863 0.96177 1.70070 1.41916 1.01831 1.35360 0.86708 0.80324 0.77660 0.83518 1.20011 1.21212 1.20157 1.74051 1.22619 1.17125 0.98961 1.74517 0.96908 1.18023 1.25974 1.22008 0.92523 1.05404 0.83502 1.58507 1.20188 1.03293 1.36288 1.22088 0.96901 0.86887 1.00439 1.22197 0.97051 0.99303 0.98477 1.20987 0.89627 0.96809 0.83069 1.22339 0.94792 1.02580 1.03065 1.92864 1.74677 1.97279 1.53962 1.22206 0.97691 0.94744 1.02416 1.22069 0.95187 0.96361 0.92447 0.88036 0.88485 0.85950 0.88614 0.87907 0.90446 0.89135 0.80666 0.92830 0.92350 0.90283 0.89187 0.89855 0.91330 0.91407 0.90558 0.89126 0.89768 0.89907 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 14.32 29.01 0.42 -1.44 16 2 C -0.17 -2.34 9.85 -36.03 -0.35 -2.69 16 3 C 0.14 1.92 6.50 -5.20 -0.03 1.89 16 4 N -0.46 -7.81 2.79 -115.37 -0.32 -8.13 16 5 C 0.22 4.38 7.09 -154.01 -1.09 3.29 16 6 C -0.07 -1.31 5.20 -27.88 -0.14 -1.45 16 7 C 0.24 5.86 2.81 -27.88 -0.08 5.79 16 8 H 0.05 1.38 7.27 -51.93 -0.38 1.00 16 9 O -0.56 -14.60 12.48 -35.23 -0.44 -15.04 16 10 C -0.58 -14.96 8.76 -34.44 -0.30 -15.26 16 11 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 12 C 0.08 2.19 5.40 -17.82 -0.10 2.09 16 13 N -0.86 -24.71 12.84 55.43 0.71 -23.99 16 14 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 15 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 N -0.29 -6.30 12.18 32.99 0.40 -5.90 16 19 N -0.31 -6.35 12.18 30.31 0.37 -5.99 16 20 C 0.32 5.51 6.42 -318.87 -2.05 3.46 16 21 N -0.46 -6.04 4.67 -174.55 -0.82 -6.86 16 22 C 0.06 0.74 5.28 -3.83 -0.02 0.72 16 23 C -0.13 -1.08 5.16 -26.65 -0.14 -1.22 16 24 C 0.11 0.99 1.25 -90.50 -0.11 0.88 16 25 C -0.17 -1.05 8.94 37.16 0.33 -0.72 16 26 F -0.21 -2.46 15.97 2.25 0.04 -2.42 16 27 C -0.13 -1.19 5.16 -26.65 -0.14 -1.33 16 28 C 0.07 0.85 5.25 -3.83 -0.02 0.83 16 29 H 0.10 1.06 8.06 -52.48 -0.42 0.64 16 30 H 0.10 0.88 7.84 -52.48 -0.41 0.47 16 31 H 0.12 2.13 7.19 -52.49 -0.38 1.75 16 32 H 0.10 1.05 7.79 -51.93 -0.40 0.64 16 33 H 0.10 1.29 7.11 -51.92 -0.37 0.92 16 34 H 0.08 1.35 7.18 -51.93 -0.37 0.98 16 35 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 36 H 0.35 8.28 9.04 45.56 0.41 8.70 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.06 0.79 7.87 -51.93 -0.41 0.38 16 39 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 48 H 0.06 0.87 7.87 -51.93 -0.41 0.46 16 LS Contribution 396.01 15.07 5.97 5.97 Total: -1.00 -32.94 396.01 -9.85 -42.79 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -6.91 Total: 9.31 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -3.83 Total: -5.18 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 0.35 Total: -50.87 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.44 Total: -15.04 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.42 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.94 -9.85 -42.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121629750.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.163 kcal (2) G-P(sol) polarization free energy of solvation -32.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds