Wall clock time and date at job start Tue Mar 31 2020 22:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50691 * 120.00011 * 2 1 4 4 N 1.46495 * 109.47246 * 125.00101 * 3 2 1 5 5 C 1.36738 * 127.13740 * 95.09900 * 4 3 2 6 6 C 1.50702 * 126.34854 * 359.96371 * 5 4 3 7 7 C 1.53000 * 109.47086 * 270.01775 * 6 5 4 8 8 H 1.08999 * 109.47027 * 55.00306 * 7 6 5 9 9 O 1.42897 * 109.47627 * 294.99848 * 7 6 5 10 10 C 1.50705 * 109.47218 * 174.99517 * 7 6 5 11 11 H 1.08006 * 119.99664 * 0.02562 * 10 7 6 12 12 C 1.37872 * 120.00189 * 179.97438 * 10 7 6 13 13 N 1.31517 * 120.00043 * 0.02562 * 12 10 7 14 14 Si 1.86798 * 119.99962 * 180.02562 * 12 10 7 15 15 H 1.48503 * 109.47069 * 60.00719 * 14 12 10 16 16 H 1.48501 * 109.47136 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47504 * 300.00560 * 14 12 10 18 18 N 1.30300 * 107.30796 * 180.02562 * 5 4 3 19 19 N 1.28529 * 110.05241 * 359.97438 * 18 5 4 20 20 C 1.31222 * 109.85762 * 0.02562 * 19 18 5 21 21 N 1.38578 * 126.46855 * 180.02562 * 20 19 18 22 22 C 1.46854 * 111.00080 * 64.09606 * 21 20 19 23 23 C 1.53035 * 109.52234 * 174.15486 * 22 21 20 24 24 C 1.53122 * 109.27682 * 59.18140 * 23 22 21 25 25 C 1.52996 * 109.52474 * 182.43807 * 24 23 22 26 26 F 1.39905 * 109.52420 * 62.24586 * 24 23 22 27 27 C 1.53123 * 109.16238 * 302.34381 * 24 23 22 28 28 C 1.46847 * 111.00309 * 299.88217 * 21 20 19 29 29 H 1.08003 * 120.00351 * 180.02562 * 1 2 3 30 30 H 1.08005 * 120.00005 * 0.02562 * 1 2 3 31 31 H 1.07994 * 119.99552 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.47558 * 4.99782 * 3 2 1 33 33 H 1.09009 * 109.47279 * 244.99916 * 3 2 1 34 34 H 1.08996 * 109.47033 * 30.01710 * 6 5 4 35 35 H 1.09001 * 109.47359 * 150.02108 * 6 5 4 36 36 H 0.96697 * 113.99547 * 300.00726 * 9 7 6 37 37 H 0.96998 * 119.99945 * 179.97438 * 13 12 10 38 38 H 1.08992 * 109.46020 * 294.17638 * 22 21 20 39 39 H 1.08998 * 109.45971 * 54.14234 * 22 21 20 40 40 H 1.09002 * 109.50660 * 299.24242 * 23 22 21 41 41 H 1.08997 * 109.53600 * 179.13640 * 23 22 21 42 42 H 1.09002 * 109.47385 * 179.68275 * 25 24 23 43 43 H 1.09000 * 109.47029 * 299.68188 * 25 24 23 44 44 H 1.09006 * 109.47274 * 59.68018 * 25 24 23 45 45 H 1.09004 * 109.49993 * 297.71559 * 27 24 23 46 46 H 1.08995 * 109.53804 * 177.61485 * 27 24 23 47 47 H 1.08995 * 109.45907 * 305.86056 * 28 21 20 48 48 H 1.08998 * 109.45757 * 65.83949 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3318 1.1314 5 6 4.3178 0.9906 1.1197 6 6 5.1058 0.5097 -0.0715 7 6 5.0237 -1.0158 -0.1552 8 1 3.9780 -1.3229 -0.1731 9 8 5.6697 -1.5908 0.9824 10 6 5.7073 -1.4874 -1.4128 11 1 6.1558 -0.7707 -2.0849 12 6 5.7610 -2.8338 -1.7048 13 7 5.2153 -3.7065 -0.8861 14 14 6.6089 -3.4184 -3.2632 15 1 8.0335 -2.9996 -3.2385 16 1 6.5292 -4.8990 -3.3445 17 1 5.9379 -2.8213 -4.4457 18 7 4.7717 1.1570 2.3297 19 7 3.8318 1.5774 3.0990 20 6 2.7186 1.7023 2.4155 21 7 1.4950 2.1304 2.9052 22 6 1.5695 3.5239 3.3625 23 6 0.1728 4.0074 3.7591 24 6 -0.3738 3.1129 4.8752 25 6 -1.7943 3.5536 5.2342 26 9 0.4482 3.2169 6.0025 27 6 -0.3958 1.6607 4.3902 28 6 1.0175 1.2452 3.9752 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6213 1.4025 -0.9314 34 1 4.6925 0.9462 -0.9807 35 1 6.1475 0.8121 0.0358 36 1 6.6051 -1.3592 1.0622 37 1 5.2528 -4.6537 -1.0917 38 1 2.2344 3.5884 4.2238 39 1 1.9557 4.1499 2.5581 40 1 -0.4892 3.9562 2.8946 41 1 0.2302 5.0367 4.1130 42 1 -2.1847 2.9127 6.0248 43 1 -1.7777 4.5873 5.5794 44 1 -2.4326 3.4746 4.3541 45 1 -1.0666 1.5726 3.5356 46 1 -0.7441 1.0130 5.1946 47 1 1.0028 0.2163 3.6158 48 1 1.6848 1.3206 4.8337 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121629750.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:36 Heat of formation + Delta-G solvation = -20.157121 kcal Electronic energy + Delta-G solvation = -30777.574562 eV Core-core repulsion = 26589.882150 eV Total energy + Delta-G solvation = -4187.692412 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.66745 -44.00331 -39.76424 -38.00975 -37.08851 -35.25810 -34.25511 -33.81045 -32.68148 -32.18051 -30.24920 -28.74005 -27.64205 -27.07413 -24.53585 -24.08244 -23.52803 -22.13076 -22.01742 -20.73004 -20.54492 -19.16441 -18.46826 -17.56833 -17.36703 -16.66521 -16.55407 -16.50086 -16.38973 -16.13058 -16.07211 -15.73842 -15.48287 -15.20937 -14.89868 -14.50875 -14.39409 -13.81124 -13.63595 -13.41271 -13.29119 -13.22963 -13.05469 -12.94117 -12.91050 -12.86489 -12.82232 -12.68668 -12.46614 -12.44199 -12.29971 -12.04455 -11.57375 -11.39087 -11.26622 -11.20605 -11.08523 -10.69808 -10.51336 -10.42490 -9.94695 -9.79407 -8.12972 -6.39660 0.66054 0.99926 1.43306 1.45181 1.52729 1.56653 1.79643 2.40334 2.64860 3.14014 3.42944 3.44250 3.49281 3.63882 3.70277 3.78550 3.84603 4.00163 4.01689 4.07118 4.15391 4.19312 4.28984 4.41954 4.49682 4.51673 4.55003 4.59558 4.65405 4.72836 4.74222 4.82697 4.89072 4.93487 4.96457 5.00758 5.04005 5.09125 5.27106 5.36156 5.52116 5.57278 5.61634 5.63669 5.71483 5.74785 6.03278 6.21050 6.71465 7.33640 7.53413 7.72400 8.91363 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.022031 B = 0.002860 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.653011 B = 9788.466194 C =10218.138977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.204 4.204 3 C 0.142 3.858 4 N -0.457 5.457 5 C 0.207 3.793 6 C -0.050 4.050 7 C 0.244 3.756 8 H 0.021 0.979 9 O -0.581 6.581 10 C -0.582 4.582 11 H 0.071 0.929 12 C 0.026 3.974 13 N -0.901 5.901 14 Si 0.961 3.039 15 H -0.268 1.268 16 H -0.290 1.290 17 H -0.263 1.263 18 N -0.324 5.324 19 N -0.353 5.353 20 C 0.338 3.662 21 N -0.440 5.440 22 C 0.062 3.938 23 C -0.123 4.123 24 C 0.104 3.896 25 C -0.164 4.164 26 F -0.231 7.231 27 C -0.123 4.123 28 C 0.067 3.933 29 H 0.107 0.893 30 H 0.133 0.867 31 H 0.074 0.926 32 H 0.131 0.869 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.356 0.644 37 H 0.260 0.740 38 H 0.029 0.971 39 H 0.084 0.916 40 H 0.117 0.883 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.099 0.901 45 H 0.116 0.884 46 H 0.092 0.908 47 H 0.065 0.935 48 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.739 16.876 3.879 25.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.223 4.223 3 C 0.022 3.978 4 N -0.149 5.149 5 C -0.061 4.061 6 C -0.090 4.090 7 C 0.185 3.815 8 H 0.039 0.961 9 O -0.385 6.385 10 C -0.619 4.619 11 H 0.089 0.911 12 C -0.176 4.176 13 N -0.538 5.538 14 Si 0.785 3.215 15 H -0.193 1.193 16 H -0.216 1.216 17 H -0.187 1.187 18 N -0.163 5.163 19 N -0.196 5.196 20 C -0.019 4.019 21 N -0.166 5.166 22 C -0.065 4.065 23 C -0.160 4.160 24 C 0.086 3.914 25 C -0.221 4.221 26 F -0.212 7.212 27 C -0.161 4.161 28 C -0.061 4.061 29 H 0.125 0.875 30 H 0.151 0.849 31 H 0.093 0.907 32 H 0.149 0.851 33 H 0.127 0.873 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.201 0.799 37 H 0.069 0.931 38 H 0.048 0.952 39 H 0.103 0.897 40 H 0.136 0.864 41 H 0.117 0.883 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.118 0.882 45 H 0.134 0.866 46 H 0.110 0.890 47 H 0.083 0.917 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -18.760 16.487 4.821 25.436 hybrid contribution 1.308 -0.902 -0.928 1.840 sum -17.452 15.585 3.893 23.720 Atomic orbital electron populations 1.24091 0.94139 1.03821 0.94547 1.22913 0.97394 0.96885 1.05138 1.21178 0.91727 0.98126 0.86797 1.46510 1.09751 1.48612 1.09998 1.25221 0.82750 1.00265 0.97869 1.20958 0.98808 0.98756 0.90441 1.19138 0.92675 0.85251 0.84392 0.96081 1.86536 1.26158 1.76757 1.49012 1.21969 1.39092 0.92965 1.07924 0.91059 1.25913 0.95171 0.97178 0.99379 1.70237 1.43932 1.01969 1.37683 0.85592 0.79383 0.76752 0.79729 1.19266 1.21609 1.18739 1.73930 1.24165 1.18253 0.99997 1.74427 0.98116 1.20093 1.26976 1.22476 0.92996 1.03037 0.83422 1.58859 1.17366 1.04207 1.36202 1.22199 0.99092 0.85730 0.99471 1.22223 0.94844 0.99742 0.99234 1.21306 0.90972 0.96609 0.82529 1.22306 0.92823 1.02781 1.04188 1.92829 1.75663 1.97339 1.55329 1.22217 0.94971 0.95314 1.03621 1.22070 0.97277 0.95703 0.91004 0.87499 0.84896 0.90749 0.85140 0.87302 0.88006 0.88701 0.79855 0.93134 0.95239 0.89732 0.86444 0.88268 0.91298 0.90863 0.88216 0.86577 0.88966 0.91650 0.95323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 14.32 67.78 0.97 -1.52 16 2 C -0.20 -5.62 9.85 25.64 0.25 -5.36 16 3 C 0.14 3.60 6.50 85.63 0.56 4.16 16 4 N -0.46 -15.53 2.79 -518.91 -1.45 -16.98 16 5 C 0.21 8.46 7.09 137.64 0.98 9.44 16 6 C -0.05 -1.98 5.20 29.85 0.16 -1.83 16 7 C 0.24 12.26 2.81 29.85 0.08 12.34 16 8 H 0.02 1.20 7.27 -2.39 -0.02 1.18 16 9 O -0.58 -31.89 12.48 -148.98 -1.86 -33.75 16 10 C -0.58 -30.47 8.76 25.60 0.22 -30.24 16 11 H 0.07 3.48 7.74 -2.91 -0.02 3.45 16 12 C 0.03 1.42 5.40 84.65 0.46 1.88 16 13 N -0.90 -53.63 12.84 21.45 0.28 -53.35 16 14 Si 0.96 42.14 29.54 68.60 2.03 44.17 16 15 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 16 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 17 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 18 N -0.32 -14.83 12.18 -49.53 -0.60 -15.43 16 19 N -0.35 -15.12 12.18 -58.00 -0.71 -15.82 16 20 C 0.34 11.72 6.42 260.11 1.67 13.39 16 21 N -0.44 -11.22 4.67 -706.16 -3.30 -14.52 16 22 C 0.06 1.35 5.28 86.32 0.46 1.81 16 23 C -0.12 -1.60 5.16 30.65 0.16 -1.44 16 24 C 0.10 1.54 1.25 -10.71 -0.01 1.53 16 25 C -0.16 -1.40 8.94 71.98 0.64 -0.75 16 26 F -0.23 -5.33 15.97 44.97 0.72 -4.61 16 27 C -0.12 -1.93 5.16 30.65 0.16 -1.77 16 28 C 0.07 1.70 5.25 86.33 0.45 2.15 16 29 H 0.11 1.97 8.06 -2.91 -0.02 1.95 16 30 H 0.13 1.68 7.84 -2.91 -0.02 1.65 16 31 H 0.07 2.78 7.19 -2.91 -0.02 2.76 16 32 H 0.13 2.36 7.79 -2.38 -0.02 2.34 16 33 H 0.11 2.58 7.11 -2.38 -0.02 2.56 16 34 H 0.10 3.50 7.18 -2.39 -0.02 3.48 16 35 H 0.09 3.68 8.14 -2.39 -0.02 3.66 16 36 H 0.36 17.74 9.04 -74.06 -0.67 17.07 16 37 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 38 H 0.03 0.82 7.87 -2.39 -0.02 0.80 16 39 H 0.08 1.74 8.10 -2.39 -0.02 1.72 16 40 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 45 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 46 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.06 1.86 8.10 -2.39 -0.02 1.85 16 48 H 0.03 0.89 7.87 -2.39 -0.02 0.87 16 Total: -1.00 -76.64 396.01 2.60 -74.04 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: 0.29 Total: 32.49 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: 7.20 Total: 3.77 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -5.78 Total: -116.10 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -1.86 Total: -33.75 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.72 Total: -4.61 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -76.64 2.60 -74.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121629750.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.885 kcal (2) G-P(sol) polarization free energy of solvation -76.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds