Wall clock time and date at job start Tue Mar 31 2020 20:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21283 * 120.00603 * 359.97438 * 9 8 5 11 11 C 1.50704 * 119.99854 * 180.02562 * 9 8 5 12 12 C 1.52999 * 109.47027 * 179.97438 * 11 9 8 13 13 O 1.42903 * 109.47238 * 180.02562 * 12 11 9 14 14 C 1.35936 * 117.00234 * 180.02562 * 13 12 11 15 15 C 1.38708 * 120.03218 * 359.72085 * 14 13 12 16 16 C 1.38150 * 119.96926 * 179.78759 * 15 14 13 17 17 C 1.38450 * 120.03431 * 0.49548 * 16 15 14 18 18 F 1.35101 * 119.97315 * 179.72180 * 17 16 15 19 19 C 1.38462 * 120.05922 * 359.73654 * 17 16 15 20 20 C 1.38152 * 120.02528 * 0.02582 * 19 17 16 21 21 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 22 22 C 1.36935 * 120.00239 * 275.00034 * 21 2 1 23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 2 24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 2 25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46758 * 269.72270 * 26 24 22 28 28 H 1.48499 * 109.47026 * 29.72118 * 26 24 22 29 29 H 1.48496 * 109.47474 * 149.72153 * 26 24 22 30 30 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 31 31 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 32 32 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 34 34 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 35 35 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 36 36 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 37 37 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 38 38 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 39 39 H 1.08993 * 109.46986 * 300.00093 * 11 9 8 40 40 H 1.09010 * 109.46881 * 60.00283 * 11 9 8 41 41 H 1.09000 * 109.47634 * 300.00460 * 12 11 9 42 42 H 1.09003 * 109.47199 * 60.00436 * 12 11 9 43 43 H 1.07999 * 120.01183 * 0.02562 * 15 14 13 44 44 H 1.08000 * 119.98394 * 180.20618 * 16 15 14 45 45 H 1.07996 * 119.98888 * 179.97438 * 19 17 16 46 46 H 1.08005 * 120.01405 * 179.97438 * 20 19 17 47 47 H 0.97004 * 119.99747 * 95.00774 * 21 2 1 48 48 H 0.97000 * 120.00481 * 0.27542 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9356 0.4343 -0.5730 11 6 5.5550 2.6567 -1.2699 12 6 6.9698 2.8720 -0.7286 13 8 7.3431 4.2404 -0.9019 14 6 8.5805 4.6020 -0.4707 15 6 9.4152 3.6600 0.1123 16 6 10.6742 4.0278 0.5460 17 6 11.0991 5.3383 0.4083 18 9 12.3285 5.6979 0.8380 19 6 10.2652 6.2808 -0.1690 20 6 9.0075 5.9145 -0.6081 21 7 2.0183 -0.6906 1.1962 22 6 2.1490 -0.0075 2.3758 23 1 1.8918 1.0403 2.4244 24 6 2.6122 -0.6617 3.5091 25 7 2.9205 -1.9400 3.4511 26 14 2.7899 0.2699 5.1184 27 1 4.1540 0.8503 5.2062 28 1 1.7835 1.3605 5.1727 29 1 2.5735 -0.6603 6.2554 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.7517 -1.7715 -1.2056 34 1 1.6054 -0.2617 -2.1369 35 1 5.1716 -1.3615 -2.5380 36 1 3.8002 -2.4818 -2.3594 37 1 3.6547 -1.0591 -3.4193 38 1 3.3284 1.4130 -1.9027 39 1 5.5290 2.9085 -2.3301 40 1 4.8577 3.2954 -0.7275 41 1 6.9954 2.6202 0.3316 42 1 7.6673 2.2333 -1.2706 43 1 9.0825 2.6385 0.2235 44 1 11.3256 3.2938 0.9969 45 1 10.5976 7.3028 -0.2754 46 1 8.3570 6.6500 -1.0580 47 1 2.2490 -1.6318 1.1526 48 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135357502.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:36 Heat of formation + Delta-G solvation = -97.644026 kcal Electronic energy + Delta-G solvation = -28824.883743 eV Core-core repulsion = 24601.538495 eV Total energy + Delta-G solvation = -4223.345248 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.03297 -40.42773 -39.65617 -37.56863 -36.95541 -34.67948 -32.62239 -32.18924 -31.47593 -30.52947 -29.24754 -28.33215 -26.44178 -25.06065 -23.45535 -23.14399 -22.24512 -21.16020 -20.28001 -19.92346 -18.71650 -17.68471 -17.40077 -16.87249 -16.59090 -16.56973 -15.93237 -15.73728 -15.01515 -14.94951 -14.68613 -14.55101 -14.18109 -13.91110 -13.73885 -13.58719 -13.35114 -13.23717 -13.10980 -12.87695 -12.81827 -12.22244 -12.15095 -11.93361 -11.87116 -11.73218 -11.70511 -11.07143 -11.04495 -10.86221 -10.73875 -10.52433 -10.47073 -10.13104 -9.98561 -9.71245 -9.47948 -9.14330 -8.89343 -8.83095 -8.35495 -7.00010 -6.05987 -3.05662 0.87118 0.94880 2.65301 2.79995 3.29918 3.52860 3.55685 3.58176 3.71162 4.05864 4.38124 4.49761 4.59588 4.69609 4.78073 4.83761 4.88668 5.00752 5.04471 5.21672 5.28020 5.32494 5.38149 5.54969 5.56415 5.57681 5.61274 5.63886 5.77544 5.83044 5.84171 5.87383 5.89363 5.97358 6.01509 6.18069 6.24194 6.32723 6.42576 6.43764 6.56446 6.70036 6.81675 6.97613 7.08835 7.65152 7.83151 8.38838 8.79259 9.26192 10.12356 10.26964 11.42460 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010198 B = 0.002584 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.960123 B =10832.022030 C =12542.596762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.177 3.823 3 H 0.047 0.953 4 C -0.133 4.133 5 C 0.144 3.856 6 H 0.102 0.898 7 C -0.161 4.161 8 N -0.714 5.714 9 C 0.520 3.480 10 O -0.535 6.535 11 C -0.139 4.139 12 C 0.073 3.927 13 O -0.314 6.314 14 C 0.128 3.872 15 C -0.179 4.179 16 C -0.110 4.110 17 C 0.054 3.946 18 F -0.143 7.143 19 C -0.115 4.115 20 C -0.126 4.126 21 N -0.732 5.732 22 C -0.326 4.326 23 H 0.061 0.939 24 C -0.044 4.044 25 N -0.944 5.944 26 Si 1.079 2.921 27 H -0.296 1.296 28 H -0.296 1.296 29 H -0.288 1.288 30 H 0.053 0.947 31 H 0.035 0.965 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.396 0.604 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.143 0.857 44 H 0.138 0.862 45 H 0.141 0.859 46 H 0.141 0.859 47 H 0.365 0.635 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.596 13.126 -15.056 21.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.067 3.933 3 H 0.065 0.935 4 C -0.171 4.171 5 C 0.040 3.960 6 H 0.120 0.880 7 C -0.219 4.219 8 N -0.365 5.365 9 C 0.305 3.695 10 O -0.412 6.412 11 C -0.179 4.179 12 C -0.002 4.002 13 O -0.228 6.228 14 C 0.082 3.918 15 C -0.197 4.197 16 C -0.129 4.129 17 C 0.035 3.965 18 F -0.122 7.122 19 C -0.134 4.134 20 C -0.145 4.145 21 N -0.375 5.375 22 C -0.457 4.457 23 H 0.079 0.921 24 C -0.242 4.242 25 N -0.589 5.589 26 Si 0.910 3.090 27 H -0.224 1.224 28 H -0.223 1.223 29 H -0.214 1.214 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.230 0.770 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.161 0.839 44 H 0.156 0.844 45 H 0.159 0.841 46 H 0.159 0.841 47 H 0.199 0.801 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.433 12.764 -13.115 20.589 hybrid contribution -0.566 0.046 -1.627 1.723 sum 8.867 12.810 -14.743 21.449 Atomic orbital electron populations 1.22442 0.99451 1.00740 0.99901 1.20157 0.91568 0.95511 0.86065 0.93503 1.22194 0.93766 1.02163 0.99000 1.21016 0.95051 0.80173 0.99731 0.88000 1.22186 1.01538 1.00179 0.98043 1.45904 1.16307 1.11721 1.62526 1.20086 0.82221 0.89236 0.77943 1.90749 1.51096 1.56663 1.42702 1.21453 0.96948 0.95290 1.04256 1.22516 0.95621 0.79603 1.02485 1.85982 1.29478 1.29571 1.77748 1.18997 0.84685 0.93608 0.94514 1.21293 0.94621 1.00715 1.03102 1.20985 0.96713 0.94869 1.00358 1.17590 0.81889 0.93889 1.03155 1.91487 1.40270 1.92399 1.88040 1.20933 0.93456 0.99746 0.99231 1.20276 0.96261 0.94050 1.03913 1.42409 1.79143 1.09668 1.06263 1.19970 1.41730 0.94883 0.89130 0.92086 1.25673 0.99498 0.97492 1.01503 1.70844 1.51472 1.08210 1.28394 0.83251 0.75786 0.74193 0.75768 1.22401 1.22264 1.21422 0.92829 0.94583 0.93670 0.90754 0.91852 0.92480 0.91751 0.93012 0.77030 0.88030 0.87599 0.90447 0.90914 0.83919 0.84364 0.84134 0.84122 0.80139 0.93387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 9.49 37.16 0.35 -2.49 16 2 C 0.18 3.26 2.84 -67.93 -0.19 3.07 16 3 H 0.05 0.89 7.56 -51.93 -0.39 0.49 16 4 C -0.13 -1.92 4.29 -26.73 -0.11 -2.03 16 5 C 0.14 2.19 2.52 -67.93 -0.17 2.02 16 6 H 0.10 2.07 7.05 -51.93 -0.37 1.71 16 7 C -0.16 -2.07 9.48 37.16 0.35 -1.72 16 8 N -0.71 -9.45 4.45 -53.80 -0.24 -9.69 16 9 C 0.52 7.63 7.79 -10.98 -0.09 7.54 16 10 O -0.54 -10.26 15.64 5.56 0.09 -10.17 16 11 C -0.14 -1.49 6.07 -27.88 -0.17 -1.66 16 12 C 0.07 0.85 4.03 37.16 0.15 1.00 16 13 O -0.31 -3.59 10.14 -19.54 -0.20 -3.78 16 14 C 0.13 1.41 6.69 -39.23 -0.26 1.15 16 15 C -0.18 -1.93 9.04 -39.44 -0.36 -2.29 16 16 C -0.11 -1.13 10.02 -39.54 -0.40 -1.53 16 17 C 0.05 0.56 7.30 -39.42 -0.29 0.27 16 18 F -0.14 -1.58 17.27 2.25 0.04 -1.54 16 19 C -0.11 -1.03 10.02 -39.53 -0.40 -1.43 16 20 C -0.13 -1.18 9.98 -39.44 -0.39 -1.58 16 21 N -0.73 -17.56 4.49 -53.43 -0.24 -17.80 16 22 C -0.33 -9.02 9.93 -15.06 -0.15 -9.17 16 23 H 0.06 1.68 7.83 -52.48 -0.41 1.27 16 24 C -0.04 -1.28 5.50 -17.43 -0.10 -1.38 16 25 N -0.94 -29.36 13.70 55.49 0.76 -28.60 16 26 Si 1.08 26.45 29.92 -169.99 -5.09 21.36 16 27 H -0.30 -7.16 7.11 56.52 0.40 -6.75 16 28 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.40 4.00 8.60 -40.82 -0.35 3.65 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.11 1.05 8.14 -51.92 -0.42 0.63 16 41 H 0.08 1.01 7.61 -51.93 -0.40 0.62 16 42 H 0.07 0.83 7.63 -51.93 -0.40 0.43 16 43 H 0.14 1.49 6.30 -52.49 -0.33 1.16 16 44 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 46 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 47 H 0.37 9.20 6.63 -40.82 -0.27 8.93 16 48 H 0.25 7.79 6.77 -40.82 -0.28 7.51 16 LS Contribution 403.49 15.07 6.08 6.08 Total: -1.00 -34.17 403.49 -8.49 -42.67 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -7.48 Total: 11.68 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -2.22 Total: -10.20 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.28 Total: -56.09 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.11 Total: -13.95 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 26.45 SS G_CDS: -5.09 Total: 21.36 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.17 -8.49 -42.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135357502.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.977 kcal (2) G-P(sol) polarization free energy of solvation -34.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds