Wall clock time and date at job start Tue Mar 31 2020 20:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21283 * 120.00603 * 359.97438 * 9 8 5 11 11 C 1.50704 * 119.99854 * 180.02562 * 9 8 5 12 12 C 1.52999 * 109.47027 * 179.97438 * 11 9 8 13 13 O 1.42903 * 109.47238 * 180.02562 * 12 11 9 14 14 C 1.35936 * 117.00234 * 180.02562 * 13 12 11 15 15 C 1.38708 * 120.03218 * 359.72085 * 14 13 12 16 16 C 1.38150 * 119.96926 * 179.78759 * 15 14 13 17 17 C 1.38450 * 120.03431 * 0.49548 * 16 15 14 18 18 F 1.35101 * 119.97315 * 179.72180 * 17 16 15 19 19 C 1.38462 * 120.05922 * 359.73654 * 17 16 15 20 20 C 1.38152 * 120.02528 * 0.02582 * 19 17 16 21 21 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 22 22 C 1.36935 * 120.00239 * 275.00034 * 21 2 1 23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 2 24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 2 25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46758 * 269.72270 * 26 24 22 28 28 H 1.48499 * 109.47026 * 29.72118 * 26 24 22 29 29 H 1.48496 * 109.47474 * 149.72153 * 26 24 22 30 30 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 31 31 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 32 32 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 34 34 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 35 35 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 36 36 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 37 37 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 38 38 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 39 39 H 1.08993 * 109.46986 * 300.00093 * 11 9 8 40 40 H 1.09010 * 109.46881 * 60.00283 * 11 9 8 41 41 H 1.09000 * 109.47634 * 300.00460 * 12 11 9 42 42 H 1.09003 * 109.47199 * 60.00436 * 12 11 9 43 43 H 1.07999 * 120.01183 * 0.02562 * 15 14 13 44 44 H 1.08000 * 119.98394 * 180.20618 * 16 15 14 45 45 H 1.07996 * 119.98888 * 179.97438 * 19 17 16 46 46 H 1.08005 * 120.01405 * 179.97438 * 20 19 17 47 47 H 0.97004 * 119.99747 * 95.00774 * 21 2 1 48 48 H 0.97000 * 120.00481 * 0.27542 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9356 0.4343 -0.5730 11 6 5.5550 2.6567 -1.2699 12 6 6.9698 2.8720 -0.7286 13 8 7.3431 4.2404 -0.9019 14 6 8.5805 4.6020 -0.4707 15 6 9.4152 3.6600 0.1123 16 6 10.6742 4.0278 0.5460 17 6 11.0991 5.3383 0.4083 18 9 12.3285 5.6979 0.8380 19 6 10.2652 6.2808 -0.1690 20 6 9.0075 5.9145 -0.6081 21 7 2.0183 -0.6906 1.1962 22 6 2.1490 -0.0075 2.3758 23 1 1.8918 1.0403 2.4244 24 6 2.6122 -0.6617 3.5091 25 7 2.9205 -1.9400 3.4511 26 14 2.7899 0.2699 5.1184 27 1 4.1540 0.8503 5.2062 28 1 1.7835 1.3605 5.1727 29 1 2.5735 -0.6603 6.2554 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.7517 -1.7715 -1.2056 34 1 1.6054 -0.2617 -2.1369 35 1 5.1716 -1.3615 -2.5380 36 1 3.8002 -2.4818 -2.3594 37 1 3.6547 -1.0591 -3.4193 38 1 3.3284 1.4130 -1.9027 39 1 5.5290 2.9085 -2.3301 40 1 4.8577 3.2954 -0.7275 41 1 6.9954 2.6202 0.3316 42 1 7.6673 2.2333 -1.2706 43 1 9.0825 2.6385 0.2235 44 1 11.3256 3.2938 0.9969 45 1 10.5976 7.3028 -0.2754 46 1 8.3570 6.6500 -1.0580 47 1 2.2490 -1.6318 1.1526 48 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135357502.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:35 Heat of formation + Delta-G solvation = -119.430490 kcal Electronic energy + Delta-G solvation = -28825.828475 eV Core-core repulsion = 24601.538495 eV Total energy + Delta-G solvation = -4224.289980 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.86130 -41.33524 -40.76794 -38.60669 -38.19430 -36.26590 -34.20413 -33.42062 -32.29217 -31.65861 -30.20400 -30.03635 -27.67338 -26.01880 -25.52185 -23.97551 -23.12630 -22.34913 -21.47953 -21.31879 -19.60542 -19.42001 -18.51122 -17.80307 -17.63609 -17.50275 -17.12972 -16.64630 -16.55860 -16.07115 -15.88789 -15.71808 -15.49289 -15.28341 -14.87715 -14.66545 -14.60649 -14.48366 -13.98721 -13.94017 -13.72411 -13.55393 -13.41660 -13.14878 -12.94197 -12.81274 -12.75330 -12.72562 -12.51253 -12.18224 -11.90437 -11.86277 -11.83787 -11.75468 -11.56904 -11.18132 -10.96187 -10.89833 -10.23592 -10.03097 -9.18128 -9.05104 -8.34364 -5.26036 0.11086 0.14183 1.53364 1.62823 1.64245 1.74246 1.77133 2.51373 2.55295 2.70958 3.27600 3.44460 3.54961 3.69911 3.73514 3.76064 3.84772 3.88622 4.00989 4.06945 4.08979 4.25601 4.31447 4.36582 4.47551 4.54446 4.62541 4.69623 4.72579 4.74216 4.77209 4.86889 4.87378 4.95705 5.02242 5.08442 5.09621 5.16996 5.19398 5.27576 5.36152 5.54526 5.58285 5.64740 5.65902 6.23134 6.53761 6.58832 7.15904 7.31084 8.06626 8.17686 9.18058 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010198 B = 0.002584 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.960123 B =10832.022030 C =12542.596762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.168 3.832 3 H 0.045 0.955 4 C -0.119 4.119 5 C 0.147 3.853 6 H 0.042 0.958 7 C -0.151 4.151 8 N -0.702 5.702 9 C 0.511 3.489 10 O -0.590 6.590 11 C -0.126 4.126 12 C 0.077 3.923 13 O -0.313 6.313 14 C 0.110 3.890 15 C -0.191 4.191 16 C -0.118 4.118 17 C 0.041 3.959 18 F -0.148 7.148 19 C -0.107 4.107 20 C -0.122 4.122 21 N -0.744 5.744 22 C -0.312 4.312 23 H 0.062 0.938 24 C -0.110 4.110 25 N -0.981 5.981 26 Si 1.121 2.879 27 H -0.294 1.294 28 H -0.270 1.270 29 H -0.294 1.294 30 H 0.027 0.973 31 H 0.079 0.921 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.039 0.961 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.415 0.585 39 H 0.139 0.861 40 H 0.119 0.881 41 H 0.053 0.947 42 H 0.070 0.930 43 H 0.136 0.864 44 H 0.147 0.853 45 H 0.169 0.831 46 H 0.165 0.835 47 H 0.355 0.645 48 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.416 15.774 -17.393 24.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.060 3.940 3 H 0.063 0.937 4 C -0.157 4.157 5 C 0.042 3.958 6 H 0.060 0.940 7 C -0.209 4.209 8 N -0.354 5.354 9 C 0.299 3.701 10 O -0.471 6.471 11 C -0.166 4.166 12 C 0.001 3.999 13 O -0.226 6.226 14 C 0.064 3.936 15 C -0.210 4.210 16 C -0.137 4.137 17 C 0.022 3.978 18 F -0.127 7.127 19 C -0.126 4.126 20 C -0.141 4.141 21 N -0.386 5.386 22 C -0.444 4.444 23 H 0.080 0.920 24 C -0.301 4.301 25 N -0.630 5.630 26 Si 0.947 3.053 27 H -0.221 1.221 28 H -0.195 1.195 29 H -0.221 1.221 30 H 0.046 0.954 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.128 0.872 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.253 0.747 39 H 0.156 0.844 40 H 0.137 0.863 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.154 0.846 44 H 0.165 0.835 45 H 0.186 0.814 46 H 0.182 0.818 47 H 0.187 0.813 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 8.194 15.473 -15.523 23.398 hybrid contribution -0.204 -0.722 -0.987 1.239 sum 7.989 14.751 -16.509 23.536 Atomic orbital electron populations 1.22301 0.97809 1.00728 1.00766 1.20480 0.92524 0.95332 0.85664 0.93673 1.22093 0.92955 1.02081 0.98579 1.20793 0.95394 0.81444 0.98170 0.93987 1.22081 1.00494 1.00113 0.98243 1.45798 1.16297 1.11416 1.61926 1.20819 0.81957 0.90528 0.76826 1.90733 1.52742 1.58467 1.45141 1.21399 0.96234 0.92299 1.06663 1.22380 0.96441 0.79975 1.01090 1.85956 1.29802 1.28994 1.77891 1.19285 0.84638 0.94474 0.95199 1.21321 0.95112 1.00701 1.03884 1.21125 0.96701 0.95446 1.00446 1.17809 0.82018 0.94280 1.03729 1.91472 1.40643 1.92415 1.88196 1.21244 0.92851 1.00715 0.97783 1.20567 0.96602 0.93654 1.03261 1.42637 1.79433 1.09357 1.07183 1.20272 1.38943 0.94888 0.90310 0.92024 1.26955 1.00419 0.97683 1.05037 1.70949 1.54574 1.09493 1.27948 0.82697 0.76412 0.73766 0.72393 1.22118 1.19529 1.22073 0.95393 0.90225 0.94135 0.90854 0.87219 0.94192 0.91483 0.89704 0.74729 0.84357 0.86286 0.92877 0.91187 0.84576 0.83515 0.81379 0.81787 0.81309 0.94646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.98 9.49 71.98 0.68 -4.30 16 2 C 0.17 5.93 2.84 44.99 0.13 6.06 16 3 H 0.05 1.62 7.56 -2.38 -0.02 1.60 16 4 C -0.12 -3.15 4.29 30.60 0.13 -3.01 16 5 C 0.15 4.37 2.52 45.00 0.11 4.48 16 6 H 0.04 1.79 7.05 -2.39 -0.02 1.77 16 7 C -0.15 -3.67 9.48 71.98 0.68 -2.98 16 8 N -0.70 -17.49 4.45 -442.51 -1.97 -19.46 16 9 C 0.51 14.87 7.79 87.66 0.68 15.55 16 10 O -0.59 -23.72 15.64 -3.04 -0.05 -23.77 16 11 C -0.13 -2.49 6.07 29.85 0.18 -2.31 16 12 C 0.08 1.79 4.03 71.98 0.29 2.08 16 13 O -0.31 -6.81 10.14 -92.83 -0.94 -7.75 16 14 C 0.11 2.34 6.69 22.49 0.15 2.49 16 15 C -0.19 -4.24 9.04 22.36 0.20 -4.04 16 16 C -0.12 -2.45 10.02 22.30 0.22 -2.22 16 17 C 0.04 0.82 7.30 22.37 0.16 0.98 16 18 F -0.15 -3.16 17.27 44.97 0.78 -2.38 16 19 C -0.11 -1.71 10.02 22.30 0.22 -1.49 16 20 C -0.12 -2.05 9.98 22.36 0.22 -1.83 16 21 N -0.74 -36.25 4.49 -322.94 -1.45 -37.70 16 22 C -0.31 -17.49 9.93 84.03 0.83 -16.66 16 23 H 0.06 3.39 7.83 -2.91 -0.02 3.37 16 24 C -0.11 -6.54 5.50 84.86 0.47 -6.08 16 25 N -0.98 -63.25 13.70 21.65 0.30 -62.95 16 26 Si 1.12 54.13 29.92 68.60 2.05 56.18 16 27 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 28 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 29 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 30 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.42 6.97 8.60 -92.71 -0.80 6.18 16 39 H 0.14 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.12 2.09 8.14 -2.38 -0.02 2.07 16 41 H 0.05 1.48 7.61 -2.39 -0.02 1.46 16 42 H 0.07 1.64 7.63 -2.39 -0.02 1.63 16 43 H 0.14 3.10 6.30 -2.91 -0.02 3.08 16 44 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 45 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 46 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 47 H 0.36 18.60 6.63 -92.71 -0.61 17.99 16 48 H 0.24 15.61 6.77 -92.71 -0.63 14.98 16 Total: -1.00 -78.66 403.49 3.80 -74.86 By element: Atomic # 1 Polarization: 36.55 SS G_CDS: -0.30 Total: 36.25 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 5.38 Total: -13.28 kcal Atomic # 7 Polarization: -116.99 SS G_CDS: -3.12 Total: -120.12 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.99 Total: -31.51 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.78 Total: -2.38 kcal Atomic # 14 Polarization: 54.13 SS G_CDS: 2.05 Total: 56.18 kcal Total: -78.66 3.80 -74.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135357502.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.573 kcal (2) G-P(sol) polarization free energy of solvation -78.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds