Wall clock time and date at job start Tue Mar 31 2020 20:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.46677 * 2 1 4 4 C 1.53000 * 109.47348 * 240.00246 * 2 1 3 5 5 C 1.52996 * 109.47133 * 175.01143 * 4 2 1 6 6 H 1.08992 * 109.47472 * 306.64919 * 5 4 2 7 7 C 1.53005 * 109.47212 * 186.64657 * 5 4 2 8 8 N 1.46500 * 109.47093 * 66.65019 * 5 4 2 9 9 C 1.34778 * 120.00253 * 208.53724 * 8 5 4 10 10 O 1.21287 * 119.99599 * 5.02488 * 9 8 5 11 11 C 1.50697 * 120.00165 * 185.02421 * 9 8 5 12 12 C 1.53005 * 109.47137 * 174.39104 * 11 9 8 13 13 O 1.42897 * 109.47109 * 179.97438 * 12 11 9 14 14 C 1.35954 * 116.99598 * 179.97438 * 13 12 11 15 15 C 1.38702 * 120.03220 * 359.72903 * 14 13 12 16 16 C 1.38154 * 119.96875 * 179.78875 * 15 14 13 17 17 C 1.38457 * 120.02832 * 0.48615 * 16 15 14 18 18 F 1.35092 * 119.96749 * 179.72277 * 17 16 15 19 19 C 1.38455 * 120.06140 * 359.74630 * 17 16 15 20 20 C 1.38152 * 120.02922 * 0.02562 * 19 17 16 21 21 N 1.46496 * 109.47519 * 119.99462 * 2 1 3 22 22 C 1.36931 * 120.00806 * 274.45681 * 21 2 1 23 23 H 1.08008 * 119.99746 * 352.95629 * 22 21 2 24 24 C 1.38807 * 120.00750 * 172.95123 * 22 21 2 25 25 N 1.31620 * 120.00303 * 179.25919 * 24 22 21 26 26 Si 1.86801 * 119.99638 * 359.26413 * 24 22 21 27 27 H 1.48498 * 109.47524 * 88.85178 * 26 24 22 28 28 H 1.48507 * 109.47076 * 208.85321 * 26 24 22 29 29 H 1.48502 * 109.47247 * 328.85029 * 26 24 22 30 30 H 1.08999 * 109.47198 * 299.99684 * 1 2 3 31 31 H 1.09000 * 109.47157 * 59.99918 * 1 2 3 32 32 H 1.09001 * 109.46871 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.46958 * 55.01043 * 4 2 1 34 34 H 1.09001 * 109.46856 * 295.01092 * 4 2 1 35 35 H 1.09005 * 109.47065 * 300.00206 * 7 5 4 36 36 H 1.09004 * 109.46881 * 60.00039 * 7 5 4 37 37 H 1.08999 * 109.47450 * 180.02562 * 7 5 4 38 38 H 0.97001 * 120.00024 * 28.53608 * 8 5 4 39 39 H 1.08996 * 109.47428 * 54.38768 * 11 9 8 40 40 H 1.09000 * 109.47436 * 294.38774 * 11 9 8 41 41 H 1.09000 * 109.46689 * 300.00128 * 12 11 9 42 42 H 1.09005 * 109.47232 * 59.99712 * 12 11 9 43 43 H 1.08006 * 120.01465 * 0.02562 * 15 14 13 44 44 H 1.07994 * 119.98267 * 180.21138 * 16 15 14 45 45 H 1.07997 * 119.98426 * 180.02562 * 19 17 16 46 46 H 1.08002 * 120.01399 * 179.97438 * 20 19 17 47 47 H 0.97008 * 119.99662 * 94.44870 * 21 2 1 48 48 H 0.97002 * 119.99931 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6134 -1.3135 6 1 3.8586 0.4334 -1.2380 7 6 4.0612 -1.1879 -2.6419 8 7 4.1548 -1.3674 -0.2046 9 6 5.3454 -0.9949 0.3056 10 8 5.8852 0.0163 -0.0906 11 6 6.0058 -1.8349 1.3683 12 6 7.3965 -1.2734 1.6711 13 8 8.0225 -2.0695 2.6792 14 6 9.2733 -1.7035 3.0663 15 6 9.8867 -0.6045 2.4834 16 6 11.1560 -0.2312 2.8808 17 6 11.8198 -0.9595 3.8534 18 9 13.0633 -0.5967 4.2371 19 6 11.2106 -2.0597 4.4327 20 6 9.9395 -2.4324 4.0404 21 7 2.0184 -0.6905 1.1962 22 6 2.1598 -0.0047 2.3729 23 1 2.0214 1.0662 2.3939 24 6 2.4810 -0.6858 3.5390 25 7 2.6313 -0.0248 4.6672 26 14 2.7001 -2.5407 3.5070 27 1 4.1143 -2.8668 3.1926 28 1 2.3454 -3.1040 4.8345 29 1 1.8146 -3.1259 2.4684 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6056 -0.2615 -2.1369 34 1 1.7515 -1.7714 -1.2057 35 1 3.7674 -2.2349 -2.7174 36 1 3.6222 -0.6269 -3.4670 37 1 5.1476 -1.1116 -2.6875 38 1 3.6885 -2.1347 0.1625 39 1 6.0976 -2.8618 1.0148 40 1 5.4009 -1.8154 2.2749 41 1 8.0014 -1.2929 0.7645 42 1 7.3047 -0.2464 2.0246 43 1 9.3706 -0.0386 1.7218 44 1 11.6324 0.6265 2.4295 45 1 11.7294 -2.6266 5.1915 46 1 9.4647 -3.2909 4.4922 47 1 2.2415 -1.6336 1.1546 48 1 2.8554 -0.5009 5.4821 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135357503.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:41 Heat of formation + Delta-G solvation = -86.511837 kcal Electronic energy + Delta-G solvation = -29653.540339 eV Core-core repulsion = 25430.677819 eV Total energy + Delta-G solvation = -4222.862520 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.92645 -40.25074 -39.53615 -37.44827 -36.93417 -34.43014 -32.53286 -32.00403 -31.34920 -30.65908 -29.26314 -28.97292 -26.47986 -24.86450 -23.38584 -23.01269 -22.11159 -20.96917 -20.56045 -19.66196 -18.52624 -17.62737 -17.52828 -16.74348 -16.41699 -16.34914 -15.94638 -15.61858 -14.89137 -14.81812 -14.68484 -14.45421 -14.21599 -13.78301 -13.65278 -13.37856 -13.29039 -13.05190 -12.82596 -12.74620 -12.64591 -12.44428 -12.12578 -12.08991 -11.85107 -11.73445 -11.70020 -11.14609 -11.01027 -10.82219 -10.80451 -10.60309 -10.43915 -10.39079 -10.06289 -9.64074 -9.52334 -9.34539 -9.01148 -8.62718 -8.19760 -7.28983 -5.80794 -3.16094 1.00595 1.09185 2.87605 3.00767 3.18313 3.26474 3.36989 3.44016 3.73863 4.18086 4.49587 4.52953 4.63029 4.84021 4.91234 4.96690 5.03235 5.12501 5.16695 5.24647 5.27714 5.39456 5.43955 5.50215 5.53862 5.68399 5.72057 5.77259 5.81888 5.83871 5.97663 5.98741 5.99495 6.02460 6.10700 6.13886 6.18413 6.28500 6.36611 6.42633 6.57238 6.75049 6.87391 6.97159 7.29218 7.81646 7.96540 8.37631 8.56166 9.15079 9.86609 10.07070 11.37935 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013172 B = 0.002978 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.156759 B = 9401.540126 C =10720.933978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.175 3.825 3 H 0.057 0.943 4 C -0.136 4.136 5 C 0.147 3.853 6 H 0.092 0.908 7 C -0.162 4.162 8 N -0.703 5.703 9 C 0.537 3.463 10 O -0.552 6.552 11 C -0.153 4.153 12 C 0.079 3.921 13 O -0.311 6.311 14 C 0.131 3.869 15 C -0.180 4.180 16 C -0.111 4.111 17 C 0.051 3.949 18 F -0.144 7.144 19 C -0.114 4.114 20 C -0.127 4.127 21 N -0.740 5.740 22 C -0.235 4.235 23 H 0.088 0.912 24 C 0.006 3.994 25 N -0.931 5.931 26 Si 0.864 3.136 27 H -0.274 1.274 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.057 0.943 31 H 0.038 0.962 32 H 0.043 0.957 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.396 0.604 39 H 0.096 0.904 40 H 0.119 0.881 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.142 0.858 44 H 0.137 0.863 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.353 0.647 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.786 -6.171 -9.777 15.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.066 3.934 3 H 0.075 0.925 4 C -0.175 4.175 5 C 0.043 3.957 6 H 0.110 0.890 7 C -0.220 4.220 8 N -0.354 5.354 9 C 0.323 3.677 10 O -0.430 6.430 11 C -0.193 4.193 12 C 0.003 3.997 13 O -0.225 6.225 14 C 0.085 3.915 15 C -0.199 4.199 16 C -0.130 4.130 17 C 0.032 3.968 18 F -0.123 7.123 19 C -0.133 4.133 20 C -0.145 4.145 21 N -0.384 5.384 22 C -0.365 4.365 23 H 0.106 0.894 24 C -0.190 4.190 25 N -0.579 5.579 26 Si 0.694 3.306 27 H -0.201 1.201 28 H -0.217 1.217 29 H -0.203 1.203 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.231 0.769 39 H 0.114 0.886 40 H 0.137 0.863 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.160 0.840 44 H 0.155 0.845 45 H 0.158 0.842 46 H 0.159 0.841 47 H 0.186 0.814 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.075 -5.415 -9.824 15.764 hybrid contribution -0.015 -1.502 0.423 1.561 sum 11.060 -6.918 -9.401 16.080 Atomic orbital electron populations 1.22403 0.98901 1.00701 1.00485 1.20253 0.91756 0.95989 0.85402 0.92537 1.22252 0.93981 1.01545 0.99710 1.20885 0.92581 0.97455 0.84792 0.89038 1.22216 1.01614 1.01013 0.97200 1.45848 1.20556 1.33140 1.35829 1.19897 0.81249 0.85082 0.81449 1.90654 1.64859 1.25586 1.61932 1.21679 0.95955 1.00399 1.01233 1.22480 0.92458 0.95014 0.89711 1.86040 1.26432 1.54120 1.55889 1.19045 0.84761 0.93483 0.94182 1.21264 0.96269 0.98720 1.03644 1.20942 0.94964 1.00145 0.96912 1.17562 0.81658 0.97865 0.99762 1.91472 1.38955 1.91477 1.90426 1.20918 0.95155 0.96462 1.00720 1.20307 0.94230 1.01753 0.98257 1.42753 1.79485 1.08538 1.07601 1.19047 1.39854 0.93295 0.84339 0.89392 1.24657 1.02363 0.96611 0.95338 1.69676 1.54870 1.34361 0.99018 0.86957 0.78058 0.88097 0.77452 1.20067 1.21748 1.20335 0.92357 0.94266 0.93790 0.90360 0.91886 0.92788 0.91813 0.92540 0.76927 0.88568 0.86297 0.91333 0.90355 0.83993 0.84502 0.84191 0.84102 0.81428 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.50 37.16 0.35 -2.32 16 2 C 0.18 3.04 2.89 -67.93 -0.20 2.84 16 3 H 0.06 1.07 8.08 -51.92 -0.42 0.65 16 4 C -0.14 -1.80 4.42 -26.73 -0.12 -1.92 16 5 C 0.15 2.06 2.65 -67.93 -0.18 1.88 16 6 H 0.09 1.50 7.40 -51.93 -0.38 1.11 16 7 C -0.16 -1.82 9.51 37.16 0.35 -1.47 16 8 N -0.70 -10.80 3.67 -53.81 -0.20 -10.99 16 9 C 0.54 9.17 7.81 -10.99 -0.09 9.09 16 10 O -0.55 -10.78 15.56 5.55 0.09 -10.70 16 11 C -0.15 -2.39 6.07 -27.88 -0.17 -2.56 16 12 C 0.08 1.17 4.05 37.16 0.15 1.32 16 13 O -0.31 -4.69 10.14 -19.60 -0.20 -4.89 16 14 C 0.13 1.78 6.69 -39.24 -0.26 1.52 16 15 C -0.18 -2.24 9.04 -39.44 -0.36 -2.59 16 16 C -0.11 -1.27 10.02 -39.53 -0.40 -1.66 16 17 C 0.05 0.60 7.30 -39.42 -0.29 0.31 16 18 F -0.14 -1.75 17.26 2.25 0.04 -1.71 16 19 C -0.11 -1.23 10.02 -39.53 -0.40 -1.63 16 20 C -0.13 -1.50 9.98 -39.44 -0.39 -1.89 16 21 N -0.74 -15.52 3.66 -53.43 -0.20 -15.72 16 22 C -0.24 -6.18 10.41 -15.06 -0.16 -6.34 16 23 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 24 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 25 N -0.93 -28.23 13.97 55.49 0.78 -27.46 16 26 Si 0.86 19.94 27.21 -169.99 -4.63 15.32 16 27 H -0.27 -5.79 5.42 56.52 0.31 -5.48 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.28 -6.00 6.70 56.52 0.38 -5.63 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.40 5.80 6.90 -40.82 -0.28 5.52 16 39 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.12 2.19 5.95 -51.93 -0.31 1.88 16 41 H 0.07 0.91 7.65 -51.93 -0.40 0.51 16 42 H 0.08 1.26 7.57 -51.93 -0.39 0.87 16 43 H 0.14 1.66 6.30 -52.48 -0.33 1.33 16 44 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 45 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 46 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 47 H 0.35 7.06 3.89 -40.82 -0.16 6.90 16 48 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 394.11 15.07 5.94 5.94 Total: -1.00 -31.37 394.11 -8.04 -39.41 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -7.42 Total: 16.15 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -2.24 Total: -5.36 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: 0.38 Total: -54.17 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.11 Total: -15.59 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.63 Total: 15.32 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.37 -8.04 -39.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135357503.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.098 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds