Wall clock time and date at job start Tue Mar 31 2020 20:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.46677 * 2 1 4 4 C 1.53000 * 109.47348 * 240.00246 * 2 1 3 5 5 C 1.52996 * 109.47133 * 175.01143 * 4 2 1 6 6 H 1.08992 * 109.47472 * 306.64919 * 5 4 2 7 7 C 1.53005 * 109.47212 * 186.64657 * 5 4 2 8 8 N 1.46500 * 109.47093 * 66.65019 * 5 4 2 9 9 C 1.34778 * 120.00253 * 208.53724 * 8 5 4 10 10 O 1.21287 * 119.99599 * 5.02488 * 9 8 5 11 11 C 1.50697 * 120.00165 * 185.02421 * 9 8 5 12 12 C 1.53005 * 109.47137 * 174.39104 * 11 9 8 13 13 O 1.42897 * 109.47109 * 179.97438 * 12 11 9 14 14 C 1.35954 * 116.99598 * 179.97438 * 13 12 11 15 15 C 1.38702 * 120.03220 * 359.72903 * 14 13 12 16 16 C 1.38154 * 119.96875 * 179.78875 * 15 14 13 17 17 C 1.38457 * 120.02832 * 0.48615 * 16 15 14 18 18 F 1.35092 * 119.96749 * 179.72277 * 17 16 15 19 19 C 1.38455 * 120.06140 * 359.74630 * 17 16 15 20 20 C 1.38152 * 120.02922 * 0.02562 * 19 17 16 21 21 N 1.46496 * 109.47519 * 119.99462 * 2 1 3 22 22 C 1.36931 * 120.00806 * 274.45681 * 21 2 1 23 23 H 1.08008 * 119.99746 * 352.95629 * 22 21 2 24 24 C 1.38807 * 120.00750 * 172.95123 * 22 21 2 25 25 N 1.31620 * 120.00303 * 179.25919 * 24 22 21 26 26 Si 1.86801 * 119.99638 * 359.26413 * 24 22 21 27 27 H 1.48498 * 109.47524 * 88.85178 * 26 24 22 28 28 H 1.48507 * 109.47076 * 208.85321 * 26 24 22 29 29 H 1.48502 * 109.47247 * 328.85029 * 26 24 22 30 30 H 1.08999 * 109.47198 * 299.99684 * 1 2 3 31 31 H 1.09000 * 109.47157 * 59.99918 * 1 2 3 32 32 H 1.09001 * 109.46871 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.46958 * 55.01043 * 4 2 1 34 34 H 1.09001 * 109.46856 * 295.01092 * 4 2 1 35 35 H 1.09005 * 109.47065 * 300.00206 * 7 5 4 36 36 H 1.09004 * 109.46881 * 60.00039 * 7 5 4 37 37 H 1.08999 * 109.47450 * 180.02562 * 7 5 4 38 38 H 0.97001 * 120.00024 * 28.53608 * 8 5 4 39 39 H 1.08996 * 109.47428 * 54.38768 * 11 9 8 40 40 H 1.09000 * 109.47436 * 294.38774 * 11 9 8 41 41 H 1.09000 * 109.46689 * 300.00128 * 12 11 9 42 42 H 1.09005 * 109.47232 * 59.99712 * 12 11 9 43 43 H 1.08006 * 120.01465 * 0.02562 * 15 14 13 44 44 H 1.07994 * 119.98267 * 180.21138 * 16 15 14 45 45 H 1.07997 * 119.98426 * 180.02562 * 19 17 16 46 46 H 1.08002 * 120.01399 * 179.97438 * 20 19 17 47 47 H 0.97008 * 119.99662 * 94.44870 * 21 2 1 48 48 H 0.97002 * 119.99931 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6134 -1.3135 6 1 3.8586 0.4334 -1.2380 7 6 4.0612 -1.1879 -2.6419 8 7 4.1548 -1.3674 -0.2046 9 6 5.3454 -0.9949 0.3056 10 8 5.8852 0.0163 -0.0906 11 6 6.0058 -1.8349 1.3683 12 6 7.3965 -1.2734 1.6711 13 8 8.0225 -2.0695 2.6792 14 6 9.2733 -1.7035 3.0663 15 6 9.8867 -0.6045 2.4834 16 6 11.1560 -0.2312 2.8808 17 6 11.8198 -0.9595 3.8534 18 9 13.0633 -0.5967 4.2371 19 6 11.2106 -2.0597 4.4327 20 6 9.9395 -2.4324 4.0404 21 7 2.0184 -0.6905 1.1962 22 6 2.1598 -0.0047 2.3729 23 1 2.0214 1.0662 2.3939 24 6 2.4810 -0.6858 3.5390 25 7 2.6313 -0.0248 4.6672 26 14 2.7001 -2.5407 3.5070 27 1 4.1143 -2.8668 3.1926 28 1 2.3454 -3.1040 4.8345 29 1 1.8146 -3.1259 2.4684 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6056 -0.2615 -2.1369 34 1 1.7515 -1.7714 -1.2057 35 1 3.7674 -2.2349 -2.7174 36 1 3.6222 -0.6269 -3.4670 37 1 5.1476 -1.1116 -2.6875 38 1 3.6885 -2.1347 0.1625 39 1 6.0976 -2.8618 1.0148 40 1 5.4009 -1.8154 2.2749 41 1 8.0014 -1.2929 0.7645 42 1 7.3047 -0.2464 2.0246 43 1 9.3706 -0.0386 1.7218 44 1 11.6324 0.6265 2.4295 45 1 11.7294 -2.6266 5.1915 46 1 9.4647 -3.2909 4.4922 47 1 2.2415 -1.6336 1.1546 48 1 2.8554 -0.5009 5.4821 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135357503.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:40 Heat of formation + Delta-G solvation = -105.608212 kcal Electronic energy + Delta-G solvation = -29654.368420 eV Core-core repulsion = 25430.677819 eV Total energy + Delta-G solvation = -4223.690601 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.86198 -41.33787 -40.76491 -38.61252 -38.18652 -35.93751 -34.16271 -33.42270 -32.35660 -31.96758 -30.72228 -30.05649 -27.60461 -25.98960 -25.29811 -23.97393 -23.11905 -22.17138 -21.92403 -21.05438 -19.60206 -19.53768 -18.51601 -17.83621 -17.58751 -17.51310 -17.15210 -16.58642 -16.56592 -16.07629 -15.92735 -15.72396 -15.32694 -15.02095 -14.84674 -14.63622 -14.48118 -14.33813 -14.16427 -13.98481 -13.85164 -13.73364 -13.42107 -13.27796 -13.03600 -12.84611 -12.79888 -12.53197 -12.44363 -12.30078 -12.07010 -11.84331 -11.83169 -11.72834 -11.62413 -11.45145 -10.93841 -10.83237 -10.24150 -9.95571 -9.18760 -9.18128 -7.95280 -5.27667 0.10622 0.13725 1.33142 1.43020 1.50262 1.67430 1.77673 2.50667 2.52496 2.59151 3.26492 3.36585 3.54795 3.63329 3.73322 3.76504 3.81811 3.86101 4.01423 4.06817 4.14467 4.25261 4.31743 4.35587 4.51318 4.55775 4.65683 4.67921 4.74773 4.81659 4.86011 4.86180 4.91816 5.06131 5.06617 5.08048 5.08695 5.15777 5.19301 5.37125 5.39099 5.59248 5.65309 5.69335 5.85784 6.24423 6.26762 6.56275 7.15597 7.27805 7.90004 8.11373 9.27086 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013172 B = 0.002978 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.156759 B = 9401.540126 C =10720.933978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.165 3.835 3 H 0.029 0.971 4 C -0.122 4.122 5 C 0.143 3.857 6 H 0.059 0.941 7 C -0.151 4.151 8 N -0.698 5.698 9 C 0.530 3.470 10 O -0.584 6.584 11 C -0.149 4.149 12 C 0.085 3.915 13 O -0.323 6.323 14 C 0.106 3.894 15 C -0.188 4.188 16 C -0.113 4.113 17 C 0.042 3.958 18 F -0.146 7.146 19 C -0.107 4.107 20 C -0.130 4.130 21 N -0.736 5.736 22 C -0.217 4.217 23 H 0.040 0.960 24 C -0.063 4.063 25 N -0.989 5.989 26 Si 0.930 3.070 27 H -0.244 1.244 28 H -0.311 1.311 29 H -0.245 1.245 30 H 0.023 0.977 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.042 0.958 38 H 0.402 0.598 39 H 0.130 0.870 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.055 0.945 43 H 0.143 0.857 44 H 0.155 0.845 45 H 0.168 0.832 46 H 0.156 0.844 47 H 0.362 0.638 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.951 -9.065 -12.173 18.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.058 3.942 3 H 0.047 0.953 4 C -0.160 4.160 5 C 0.039 3.961 6 H 0.078 0.922 7 C -0.209 4.209 8 N -0.349 5.349 9 C 0.317 3.683 10 O -0.466 6.466 11 C -0.189 4.189 12 C 0.009 3.991 13 O -0.237 6.237 14 C 0.061 3.939 15 C -0.207 4.207 16 C -0.132 4.132 17 C 0.023 3.977 18 F -0.125 7.125 19 C -0.126 4.126 20 C -0.148 4.148 21 N -0.381 5.381 22 C -0.348 4.348 23 H 0.058 0.942 24 C -0.254 4.254 25 N -0.640 5.640 26 Si 0.756 3.244 27 H -0.168 1.168 28 H -0.239 1.239 29 H -0.169 1.169 30 H 0.042 0.958 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.130 0.870 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.061 0.939 38 H 0.238 0.762 39 H 0.148 0.852 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.073 0.927 43 H 0.160 0.840 44 H 0.172 0.828 45 H 0.185 0.815 46 H 0.173 0.827 47 H 0.197 0.803 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.216 -8.325 -12.302 18.613 hybrid contribution -0.069 -0.437 1.148 1.230 sum 11.146 -8.762 -11.154 18.039 Atomic orbital electron populations 1.22275 0.97448 1.01417 1.00505 1.20493 0.92734 0.95043 0.85964 0.95281 1.22175 0.93051 1.02460 0.98315 1.21007 0.93261 0.95954 0.85911 0.92224 1.22107 1.00754 1.02327 0.95695 1.45914 1.19943 1.33128 1.35923 1.20201 0.81729 0.84813 0.81606 1.90637 1.65816 1.26938 1.63166 1.21652 0.95575 1.02109 0.99539 1.22344 0.92624 0.93816 0.90300 1.85997 1.27320 1.54221 1.56141 1.19369 0.84570 0.94598 0.95400 1.21333 0.96739 0.98703 1.03907 1.21144 0.94585 1.00618 0.96809 1.17758 0.81674 0.98291 0.99964 1.91470 1.39058 1.91541 1.90442 1.21201 0.94677 0.96044 1.00638 1.20548 0.94524 1.02002 0.97728 1.42647 1.79709 1.08793 1.06986 1.18863 1.37943 0.91529 0.86465 0.94211 1.25470 1.02931 1.02385 0.94621 1.69912 1.57428 1.36744 0.99942 0.85884 0.80256 0.81020 0.77216 1.16849 1.23902 1.16922 0.95777 0.90884 0.92611 0.86959 0.89656 0.90762 0.89739 0.93915 0.76222 0.85202 0.88889 0.89843 0.92684 0.83979 0.82761 0.81495 0.82658 0.80324 0.93825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.78 9.50 71.98 0.68 -4.10 16 2 C 0.17 5.54 2.89 44.99 0.13 5.67 16 3 H 0.03 1.13 8.08 -2.38 -0.02 1.11 16 4 C -0.12 -2.78 4.42 30.59 0.14 -2.64 16 5 C 0.14 3.69 2.65 44.99 0.12 3.81 16 6 H 0.06 1.95 7.40 -2.39 -0.02 1.93 16 7 C -0.15 -2.87 9.51 71.98 0.68 -2.18 16 8 N -0.70 -20.25 3.67 -442.54 -1.62 -21.87 16 9 C 0.53 17.90 7.81 87.66 0.68 18.58 16 10 O -0.58 -23.33 15.56 -3.05 -0.05 -23.38 16 11 C -0.15 -4.54 6.07 29.85 0.18 -4.36 16 12 C 0.08 2.53 4.05 71.98 0.29 2.83 16 13 O -0.32 -9.65 10.14 -93.03 -0.94 -10.59 16 14 C 0.11 2.85 6.69 22.49 0.15 3.00 16 15 C -0.19 -4.67 9.04 22.36 0.20 -4.47 16 16 C -0.11 -2.50 10.02 22.30 0.22 -2.28 16 17 C 0.04 0.94 7.30 22.37 0.16 1.11 16 18 F -0.15 -3.33 17.26 44.97 0.78 -2.56 16 19 C -0.11 -2.13 10.02 22.30 0.22 -1.90 16 20 C -0.13 -2.91 9.98 22.36 0.22 -2.68 16 21 N -0.74 -30.42 3.66 -322.95 -1.18 -31.61 16 22 C -0.22 -11.79 10.41 84.03 0.88 -10.91 16 23 H 0.04 2.50 8.06 -2.91 -0.02 2.48 16 24 C -0.06 -3.58 5.50 84.86 0.47 -3.11 16 25 N -0.99 -62.90 13.97 21.65 0.30 -62.60 16 26 Si 0.93 41.00 27.21 68.60 1.87 42.87 16 27 H -0.24 -9.50 5.42 99.48 0.54 -8.96 16 28 H -0.31 -14.82 7.11 99.48 0.71 -14.11 16 29 H -0.25 -9.42 6.70 99.48 0.67 -8.75 16 30 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.40 10.55 6.90 -92.71 -0.64 9.91 16 39 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16 40 H 0.09 3.36 5.95 -2.39 -0.01 3.35 16 41 H 0.08 2.21 7.65 -2.39 -0.02 2.19 16 42 H 0.05 1.87 7.57 -2.38 -0.02 1.85 16 43 H 0.14 3.42 6.30 -2.91 -0.02 3.41 16 44 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 45 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 46 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 47 H 0.36 13.62 3.89 -92.70 -0.36 13.26 16 48 H 0.25 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -73.46 394.11 4.35 -69.11 By element: Atomic # 1 Polarization: 44.51 SS G_CDS: -0.23 Total: 44.28 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 5.44 Total: -3.66 kcal Atomic # 7 Polarization: -113.57 SS G_CDS: -2.50 Total: -116.07 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -0.99 Total: -33.97 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.78 Total: -2.56 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 1.87 Total: 42.87 kcal Total: -73.46 4.35 -69.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135357503.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.502 kcal (2) G-P(sol) polarization free energy of solvation -73.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds