Wall clock time and date at job start Tue Mar 31 2020 20:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47090 * 2 1 4 4 C 1.52998 * 109.47292 * 240.00118 * 2 1 3 5 5 C 1.52996 * 109.47575 * 174.99860 * 4 2 1 6 6 H 1.09003 * 109.47165 * 305.00664 * 5 4 2 7 7 C 1.52994 * 109.47297 * 185.00004 * 5 4 2 8 8 N 1.46503 * 109.46895 * 64.99884 * 5 4 2 9 9 C 1.36937 * 120.00313 * 205.00162 * 8 5 4 10 10 H 1.08003 * 119.99289 * 0.02562 * 9 8 5 11 11 C 1.38807 * 120.00247 * 179.97438 * 9 8 5 12 12 N 1.31617 * 120.00306 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00052 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46693 * 60.00404 * 13 11 9 15 15 H 1.48496 * 109.46885 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47162 * 300.00385 * 13 11 9 17 17 N 1.46496 * 109.46875 * 120.00239 * 2 1 3 18 18 C 1.34777 * 119.99875 * 274.99568 * 17 2 1 19 19 O 1.21279 * 120.00162 * 0.02562 * 18 17 2 20 20 C 1.50706 * 120.00146 * 180.02562 * 18 17 2 21 21 C 1.52999 * 109.46953 * 180.02562 * 20 18 17 22 22 O 1.42905 * 109.46728 * 180.02562 * 21 20 18 23 23 C 1.35941 * 116.99999 * 179.97438 * 22 21 20 24 24 C 1.38717 * 120.02894 * 359.72167 * 23 22 21 25 25 C 1.38149 * 119.96734 * 179.79054 * 24 23 22 26 26 C 1.38453 * 120.03215 * 0.48987 * 25 24 23 27 27 F 1.35104 * 119.97222 * 179.72397 * 26 25 24 28 28 C 1.38457 * 120.05801 * 359.74019 * 26 25 24 29 29 C 1.38143 * 120.03392 * 0.02562 * 28 26 25 30 30 H 1.09007 * 109.47327 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47093 * 300.00032 * 1 2 3 32 32 H 1.09002 * 109.47121 * 59.99819 * 1 2 3 33 33 H 1.09003 * 109.46946 * 295.00601 * 4 2 1 34 34 H 1.09001 * 109.47045 * 54.99505 * 4 2 1 35 35 H 1.09006 * 109.47261 * 299.99995 * 7 5 4 36 36 H 1.08998 * 109.47343 * 60.00230 * 7 5 4 37 37 H 1.09007 * 109.47160 * 180.02562 * 7 5 4 38 38 H 0.96999 * 119.99946 * 25.00259 * 8 5 4 39 39 H 0.96992 * 120.00937 * 179.97438 * 12 11 9 40 40 H 0.96999 * 120.00082 * 95.00587 * 17 2 1 41 41 H 1.09000 * 109.46974 * 60.00144 * 20 18 17 42 42 H 1.09001 * 109.46547 * 300.00234 * 20 18 17 43 43 H 1.09000 * 109.47486 * 60.00062 * 21 20 18 44 44 H 1.09001 * 109.47362 * 299.99339 * 21 20 18 45 45 H 1.07998 * 120.01538 * 0.02562 * 24 23 22 46 46 H 1.08001 * 119.98405 * 180.20699 * 25 24 23 47 47 H 1.08006 * 119.98074 * 180.02562 * 28 26 25 48 48 H 1.08001 * 120.02046 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 1 3.8570 0.4359 -1.2677 7 6 4.0644 -1.2249 -2.6241 8 7 4.1537 -1.3342 -0.1825 9 6 5.3943 -0.9856 0.2806 10 1 5.9385 -0.1789 -0.1879 11 6 5.9520 -1.6683 1.3528 12 7 5.2886 -2.6511 1.9242 13 14 7.6447 -1.1933 1.9841 14 1 7.6269 0.2229 2.4306 15 1 8.0105 -2.0685 3.1265 16 1 8.6425 -1.3569 0.8964 17 7 2.0182 -0.6906 1.1961 18 6 2.1470 -0.0183 2.3571 19 8 1.8582 1.1583 2.4117 20 6 2.6498 -0.7286 3.5875 21 6 2.7006 0.2544 4.7588 22 8 3.1780 -0.4190 5.9253 23 6 3.2843 0.3174 7.0630 24 6 2.9416 1.6616 7.0544 25 6 3.0460 2.4077 8.2124 26 6 3.5020 1.8170 9.3786 27 9 3.6089 2.5493 10.5090 28 6 3.8489 0.4766 9.3874 29 6 3.7409 -0.2731 8.2322 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.7516 -1.7715 -1.2056 34 1 1.6053 -0.2617 -2.1369 35 1 3.7722 -2.2741 -2.6700 36 1 3.6263 -0.6886 -3.4658 37 1 5.1508 -1.1484 -2.6698 38 1 3.6647 -2.0584 0.2386 39 1 5.6784 -3.1284 2.6732 40 1 2.2490 -1.6318 1.1525 41 1 3.6492 -1.1204 3.3979 42 1 1.9775 -1.5509 3.8325 43 1 1.7011 0.6459 4.9483 44 1 3.3727 1.0769 4.5141 45 1 2.5898 2.1236 6.1439 46 1 2.7761 3.4535 8.2068 47 1 4.2041 0.0170 10.2980 48 1 4.0120 -1.3185 8.2392 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135357504.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:46 Heat of formation + Delta-G solvation = -91.963658 kcal Electronic energy + Delta-G solvation = -29656.521504 eV Core-core repulsion = 25433.422575 eV Total energy + Delta-G solvation = -4223.098929 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.88489 -40.13926 -39.33163 -37.33487 -36.77391 -34.23453 -32.43508 -31.84768 -31.25745 -30.39326 -29.04260 -28.51923 -26.37688 -24.69091 -23.69487 -22.93307 -22.02638 -20.84243 -20.27924 -19.48031 -18.42179 -17.45464 -17.21861 -16.62311 -16.18906 -16.17934 -15.75844 -15.55721 -14.90327 -14.74366 -14.50135 -14.19767 -13.86994 -13.76868 -13.69381 -13.37730 -13.11990 -12.93387 -12.78913 -12.58854 -12.54657 -12.17409 -11.94056 -11.79338 -11.70598 -11.52424 -11.44061 -11.02672 -10.86546 -10.77546 -10.75865 -10.46732 -10.40226 -10.29795 -9.94846 -9.71553 -9.31078 -9.29493 -8.99495 -8.41490 -8.12603 -6.99458 -5.84858 -3.11086 1.05786 1.14906 3.02911 3.26663 3.40576 3.46150 3.47880 3.49623 3.97459 4.22840 4.55226 4.59193 4.68507 5.01370 5.04989 5.10164 5.22065 5.26736 5.33652 5.40467 5.48834 5.49707 5.52209 5.64258 5.69064 5.79535 5.85915 5.93745 5.97569 6.02724 6.04474 6.05683 6.11221 6.18802 6.21057 6.32242 6.37971 6.47236 6.52635 6.57465 6.64706 6.82310 7.02023 7.13618 7.40721 7.65783 8.12933 8.34766 8.82433 9.46367 9.99916 10.35778 11.37405 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011793 B = 0.003079 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.645743 B = 9091.497390 C =10820.537664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.150 3.850 3 H 0.082 0.918 4 C -0.134 4.134 5 C 0.169 3.831 6 H 0.047 0.953 7 C -0.164 4.164 8 N -0.716 5.716 9 C -0.229 4.229 10 H 0.066 0.934 11 C -0.009 4.009 12 N -0.934 5.934 13 Si 0.897 3.103 14 H -0.288 1.288 15 H -0.291 1.291 16 H -0.288 1.288 17 N -0.693 5.693 18 C 0.537 3.463 19 O -0.570 6.570 20 C -0.145 4.145 21 C 0.079 3.921 22 O -0.308 6.308 23 C 0.133 3.867 24 C -0.182 4.182 25 C -0.111 4.111 26 C 0.048 3.952 27 F -0.145 7.145 28 C -0.114 4.114 29 C -0.128 4.128 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.035 0.965 37 H 0.052 0.948 38 H 0.378 0.622 39 H 0.256 0.744 40 H 0.407 0.593 41 H 0.133 0.867 42 H 0.094 0.906 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.142 0.858 46 H 0.136 0.864 47 H 0.140 0.860 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.085 3.738 5.787 11.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.045 3.955 3 H 0.101 0.899 4 C -0.172 4.172 5 C 0.059 3.941 6 H 0.065 0.935 7 C -0.224 4.224 8 N -0.360 5.360 9 C -0.360 4.360 10 H 0.084 0.916 11 C -0.204 4.204 12 N -0.583 5.583 13 Si 0.729 3.271 14 H -0.215 1.215 15 H -0.216 1.216 16 H -0.215 1.215 17 N -0.345 5.345 18 C 0.324 3.676 19 O -0.451 6.451 20 C -0.185 4.185 21 C 0.004 3.996 22 O -0.221 6.221 23 C 0.087 3.913 24 C -0.201 4.201 25 C -0.130 4.130 26 C 0.029 3.971 27 F -0.124 7.124 28 C -0.133 4.133 29 C -0.146 4.146 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.213 0.787 39 H 0.066 0.934 40 H 0.245 0.755 41 H 0.151 0.849 42 H 0.113 0.887 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.160 0.840 46 H 0.154 0.846 47 H 0.157 0.843 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.078 4.442 5.840 11.673 hybrid contribution 1.073 -0.184 0.499 1.198 sum -8.005 4.258 6.339 11.063 Atomic orbital electron populations 1.22208 0.96323 1.01621 1.01904 1.20801 0.92428 0.97709 0.84585 0.89945 1.22207 0.97801 1.00632 0.96580 1.20283 0.89702 0.95871 0.88222 0.93456 1.22423 1.01536 1.00359 0.98072 1.42447 1.18680 1.40005 1.34826 1.19154 0.93335 1.13092 1.10459 0.91574 1.24561 0.98281 0.98619 0.98965 1.69554 1.38088 1.24524 1.26142 0.86415 0.84848 0.77618 0.78242 1.21461 1.21645 1.21515 1.45906 1.65536 1.14528 1.08526 1.19969 0.76294 0.86653 0.84667 1.90620 1.52329 1.16273 1.85891 1.21512 1.07144 0.98721 0.91118 1.22517 0.99322 0.95355 0.82441 1.86077 1.80747 1.38484 1.16783 1.19082 0.95051 0.90114 0.87074 1.21270 1.05732 0.93486 0.99610 1.20929 1.00039 1.00814 0.91243 1.17558 1.06350 0.90207 0.82992 1.91470 1.94423 1.77186 1.49349 1.20915 1.00990 0.92216 0.99143 1.20323 1.03239 1.01258 0.89799 0.92799 0.92461 0.92162 0.91712 0.90846 0.93600 0.94600 0.92879 0.78714 0.93415 0.75538 0.84929 0.88731 0.91598 0.91082 0.84042 0.84615 0.84253 0.84028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.48 37.16 0.35 -1.70 16 2 C 0.15 2.27 2.57 -67.93 -0.17 2.10 16 3 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 4 C -0.13 -1.90 4.43 -26.73 -0.12 -2.02 16 5 C 0.17 3.01 2.89 -67.93 -0.20 2.81 16 6 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 7 C -0.16 -2.72 9.49 37.15 0.35 -2.36 16 8 N -0.72 -15.43 3.84 -53.43 -0.21 -15.64 16 9 C -0.23 -5.76 9.93 -15.06 -0.15 -5.91 16 10 H 0.07 1.70 7.83 -52.48 -0.41 1.29 16 11 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 12 N -0.93 -24.30 12.78 55.49 0.71 -23.59 16 13 Si 0.90 21.47 29.55 -169.99 -5.02 16.45 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 N -0.69 -11.61 3.80 -53.81 -0.20 -11.82 16 18 C 0.54 9.78 7.79 -10.98 -0.09 9.70 16 19 O -0.57 -11.56 15.64 5.56 0.09 -11.47 16 20 C -0.15 -2.46 6.07 -27.88 -0.17 -2.63 16 21 C 0.08 1.24 4.03 37.16 0.15 1.39 16 22 O -0.31 -4.88 10.14 -19.56 -0.20 -5.08 16 23 C 0.13 1.89 6.69 -39.23 -0.26 1.62 16 24 C -0.18 -2.36 9.04 -39.44 -0.36 -2.71 16 25 C -0.11 -1.32 10.02 -39.53 -0.40 -1.72 16 26 C 0.05 0.59 7.30 -39.42 -0.29 0.30 16 27 F -0.15 -1.81 17.27 2.25 0.04 -1.77 16 28 C -0.11 -1.28 10.02 -39.54 -0.40 -1.68 16 29 C -0.13 -1.58 9.98 -39.44 -0.39 -1.97 16 30 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 38 H 0.38 8.31 5.70 -40.82 -0.23 8.07 16 39 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 40 H 0.41 6.93 6.51 -40.82 -0.27 6.66 16 41 H 0.13 2.67 7.86 -51.93 -0.41 2.27 16 42 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 43 H 0.07 0.95 7.63 -51.93 -0.40 0.56 16 44 H 0.07 1.18 7.61 -51.93 -0.39 0.79 16 45 H 0.14 1.74 6.30 -52.49 -0.33 1.41 16 46 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 47 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 48 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 400.44 15.07 6.03 6.03 Total: -1.00 -27.87 400.44 -8.45 -36.32 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: -7.46 Total: 15.67 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -2.23 Total: -5.10 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 0.30 Total: -51.05 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.11 Total: -16.55 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -27.87 -8.45 -36.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135357504.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.647 kcal (2) G-P(sol) polarization free energy of solvation -27.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds