Wall clock time and date at job start Tue Mar 31 2020 20:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47090 * 2 1 4 4 C 1.52998 * 109.47292 * 240.00118 * 2 1 3 5 5 C 1.52996 * 109.47575 * 174.99860 * 4 2 1 6 6 H 1.09003 * 109.47165 * 305.00664 * 5 4 2 7 7 C 1.52994 * 109.47297 * 185.00004 * 5 4 2 8 8 N 1.46503 * 109.46895 * 64.99884 * 5 4 2 9 9 C 1.36937 * 120.00313 * 205.00162 * 8 5 4 10 10 H 1.08003 * 119.99289 * 0.02562 * 9 8 5 11 11 C 1.38807 * 120.00247 * 179.97438 * 9 8 5 12 12 N 1.31617 * 120.00306 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00052 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46693 * 60.00404 * 13 11 9 15 15 H 1.48496 * 109.46885 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47162 * 300.00385 * 13 11 9 17 17 N 1.46496 * 109.46875 * 120.00239 * 2 1 3 18 18 C 1.34777 * 119.99875 * 274.99568 * 17 2 1 19 19 O 1.21279 * 120.00162 * 0.02562 * 18 17 2 20 20 C 1.50706 * 120.00146 * 180.02562 * 18 17 2 21 21 C 1.52999 * 109.46953 * 180.02562 * 20 18 17 22 22 O 1.42905 * 109.46728 * 180.02562 * 21 20 18 23 23 C 1.35941 * 116.99999 * 179.97438 * 22 21 20 24 24 C 1.38717 * 120.02894 * 359.72167 * 23 22 21 25 25 C 1.38149 * 119.96734 * 179.79054 * 24 23 22 26 26 C 1.38453 * 120.03215 * 0.48987 * 25 24 23 27 27 F 1.35104 * 119.97222 * 179.72397 * 26 25 24 28 28 C 1.38457 * 120.05801 * 359.74019 * 26 25 24 29 29 C 1.38143 * 120.03392 * 0.02562 * 28 26 25 30 30 H 1.09007 * 109.47327 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47093 * 300.00032 * 1 2 3 32 32 H 1.09002 * 109.47121 * 59.99819 * 1 2 3 33 33 H 1.09003 * 109.46946 * 295.00601 * 4 2 1 34 34 H 1.09001 * 109.47045 * 54.99505 * 4 2 1 35 35 H 1.09006 * 109.47261 * 299.99995 * 7 5 4 36 36 H 1.08998 * 109.47343 * 60.00230 * 7 5 4 37 37 H 1.09007 * 109.47160 * 180.02562 * 7 5 4 38 38 H 0.96999 * 119.99946 * 25.00259 * 8 5 4 39 39 H 0.96992 * 120.00937 * 179.97438 * 12 11 9 40 40 H 0.96999 * 120.00082 * 95.00587 * 17 2 1 41 41 H 1.09000 * 109.46974 * 60.00144 * 20 18 17 42 42 H 1.09001 * 109.46547 * 300.00234 * 20 18 17 43 43 H 1.09000 * 109.47486 * 60.00062 * 21 20 18 44 44 H 1.09001 * 109.47362 * 299.99339 * 21 20 18 45 45 H 1.07998 * 120.01538 * 0.02562 * 24 23 22 46 46 H 1.08001 * 119.98405 * 180.20699 * 25 24 23 47 47 H 1.08006 * 119.98074 * 180.02562 * 28 26 25 48 48 H 1.08001 * 120.02046 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 1 3.8570 0.4359 -1.2677 7 6 4.0644 -1.2249 -2.6241 8 7 4.1537 -1.3342 -0.1825 9 6 5.3943 -0.9856 0.2806 10 1 5.9385 -0.1789 -0.1879 11 6 5.9520 -1.6683 1.3528 12 7 5.2886 -2.6511 1.9242 13 14 7.6447 -1.1933 1.9841 14 1 7.6269 0.2229 2.4306 15 1 8.0105 -2.0685 3.1265 16 1 8.6425 -1.3569 0.8964 17 7 2.0182 -0.6906 1.1961 18 6 2.1470 -0.0183 2.3571 19 8 1.8582 1.1583 2.4117 20 6 2.6498 -0.7286 3.5875 21 6 2.7006 0.2544 4.7588 22 8 3.1780 -0.4190 5.9253 23 6 3.2843 0.3174 7.0630 24 6 2.9416 1.6616 7.0544 25 6 3.0460 2.4077 8.2124 26 6 3.5020 1.8170 9.3786 27 9 3.6089 2.5493 10.5090 28 6 3.8489 0.4766 9.3874 29 6 3.7409 -0.2731 8.2322 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.7516 -1.7715 -1.2056 34 1 1.6053 -0.2617 -2.1369 35 1 3.7722 -2.2741 -2.6700 36 1 3.6263 -0.6886 -3.4658 37 1 5.1508 -1.1484 -2.6698 38 1 3.6647 -2.0584 0.2386 39 1 5.6784 -3.1284 2.6732 40 1 2.2490 -1.6318 1.1525 41 1 3.6492 -1.1204 3.3979 42 1 1.9775 -1.5509 3.8325 43 1 1.7011 0.6459 4.9483 44 1 3.3727 1.0769 4.5141 45 1 2.5898 2.1236 6.1439 46 1 2.7761 3.4535 8.2068 47 1 4.2041 0.0170 10.2980 48 1 4.0120 -1.3185 8.2392 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135357504.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:45 Heat of formation + Delta-G solvation = -106.210194 kcal Electronic energy + Delta-G solvation = -29657.139280 eV Core-core repulsion = 25433.422575 eV Total energy + Delta-G solvation = -4223.716705 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.85374 -41.27636 -40.66788 -38.51554 -38.11214 -35.78293 -34.06701 -33.22817 -32.27967 -31.71248 -30.28644 -29.94943 -27.58082 -25.89536 -25.54608 -23.94512 -23.09164 -22.11466 -21.66946 -20.91000 -19.51601 -19.08716 -18.47311 -17.72535 -17.48832 -17.42940 -17.05775 -16.62103 -16.55896 -15.88857 -15.72490 -15.56624 -15.38616 -15.23540 -14.72404 -14.61625 -14.36263 -14.21922 -13.96458 -13.82927 -13.68550 -13.53100 -13.30490 -13.18054 -12.87459 -12.77933 -12.71512 -12.64847 -12.55409 -12.26725 -12.16748 -11.81391 -11.70340 -11.69248 -11.57943 -11.38622 -10.85854 -10.77293 -10.23511 -9.81361 -9.16827 -8.80835 -7.84458 -5.06338 0.11409 0.14870 1.45841 1.49857 1.51913 1.75276 1.90782 2.51771 2.60208 2.71650 3.27004 3.49081 3.62003 3.76694 3.79218 3.86096 3.95744 4.01315 4.08156 4.16107 4.20794 4.28004 4.37216 4.41696 4.57280 4.59398 4.72046 4.77048 4.85722 4.87096 4.89660 4.94588 5.02715 5.07022 5.08917 5.10718 5.16024 5.17904 5.22027 5.39597 5.44147 5.61832 5.65031 5.67353 5.81031 6.29202 6.38478 6.72888 7.40754 7.47828 8.20148 8.47577 9.36300 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011793 B = 0.003079 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.645743 B = 9091.497390 C =10820.537664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.146 3.854 3 H 0.057 0.943 4 C -0.120 4.120 5 C 0.161 3.839 6 H 0.029 0.971 7 C -0.155 4.155 8 N -0.719 5.719 9 C -0.228 4.228 10 H 0.055 0.945 11 C -0.047 4.047 12 N -0.942 5.942 13 Si 0.936 3.064 14 H -0.295 1.295 15 H -0.295 1.295 16 H -0.288 1.288 17 N -0.689 5.689 18 C 0.531 3.469 19 O -0.595 6.595 20 C -0.137 4.137 21 C 0.088 3.912 22 O -0.322 6.322 23 C 0.107 3.893 24 C -0.189 4.189 25 C -0.112 4.112 26 C 0.042 3.958 27 F -0.146 7.146 28 C -0.107 4.107 29 C -0.131 4.131 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.047 0.953 36 H 0.068 0.932 37 H 0.027 0.973 38 H 0.376 0.624 39 H 0.249 0.751 40 H 0.406 0.594 41 H 0.102 0.898 42 H 0.114 0.886 43 H 0.078 0.922 44 H 0.055 0.945 45 H 0.142 0.858 46 H 0.156 0.844 47 H 0.167 0.833 48 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.346 3.616 5.425 12.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.041 3.959 3 H 0.075 0.925 4 C -0.158 4.158 5 C 0.053 3.947 6 H 0.047 0.953 7 C -0.214 4.214 8 N -0.362 5.362 9 C -0.360 4.360 10 H 0.073 0.927 11 C -0.241 4.241 12 N -0.592 5.592 13 Si 0.768 3.232 14 H -0.223 1.223 15 H -0.222 1.222 16 H -0.215 1.215 17 N -0.340 5.340 18 C 0.319 3.681 19 O -0.478 6.478 20 C -0.177 4.177 21 C 0.013 3.987 22 O -0.236 6.236 23 C 0.061 3.939 24 C -0.208 4.208 25 C -0.130 4.130 26 C 0.022 3.978 27 F -0.125 7.125 28 C -0.125 4.125 29 C -0.150 4.150 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.125 0.875 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.047 0.953 38 H 0.211 0.789 39 H 0.059 0.941 40 H 0.244 0.756 41 H 0.120 0.880 42 H 0.132 0.868 43 H 0.096 0.904 44 H 0.073 0.927 45 H 0.160 0.840 46 H 0.173 0.827 47 H 0.185 0.815 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.348 4.324 5.441 12.465 hybrid contribution 1.474 -0.083 0.600 1.593 sum -8.874 4.240 6.041 11.542 Atomic orbital electron populations 1.22104 0.93824 1.02709 1.02333 1.20941 0.94312 0.96254 0.84346 0.92511 1.22121 0.94750 1.01592 0.97350 1.20494 0.92219 0.94407 0.87573 0.95288 1.22282 1.00031 1.00832 0.98295 1.42496 1.17647 1.40181 1.35875 1.19258 0.94545 1.12200 1.10019 0.92698 1.24926 1.00048 0.99361 0.99736 1.69618 1.38389 1.25011 1.26201 0.85800 0.83158 0.76684 0.77535 1.22262 1.22169 1.21532 1.45977 1.64843 1.14413 1.08719 1.20184 0.76154 0.86424 0.85387 1.90598 1.53647 1.17215 1.86325 1.21402 1.05593 0.99431 0.91297 1.22341 0.99537 0.94457 0.82382 1.86036 1.81343 1.39041 1.17204 1.19410 0.96631 0.90813 0.87049 1.21334 1.05996 0.93263 1.00166 1.21137 0.99430 1.01737 0.90729 1.17740 1.06358 0.90661 0.83006 1.91472 1.94427 1.77255 1.49340 1.21188 0.99816 0.91818 0.99687 1.20544 1.02892 1.02030 0.89519 0.91319 0.94047 0.89744 0.90510 0.87453 0.93349 0.91308 0.95343 0.78947 0.94122 0.75617 0.88016 0.86779 0.90370 0.92704 0.83985 0.82668 0.81532 0.82872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.48 71.98 0.68 -2.78 16 2 C 0.15 4.23 2.57 44.99 0.12 4.34 16 3 H 0.06 1.96 7.58 -2.39 -0.02 1.94 16 4 C -0.12 -3.09 4.43 30.59 0.14 -2.95 16 5 C 0.16 5.56 2.89 44.99 0.13 5.69 16 6 H 0.03 1.11 8.08 -2.39 -0.02 1.09 16 7 C -0.15 -4.82 9.49 71.98 0.68 -4.14 16 8 N -0.72 -30.87 3.84 -322.95 -1.24 -32.12 16 9 C -0.23 -11.59 9.93 84.03 0.83 -10.75 16 10 H 0.05 2.88 7.83 -2.91 -0.02 2.85 16 11 C -0.05 -2.44 5.50 84.86 0.47 -1.97 16 12 N -0.94 -49.57 12.78 21.65 0.28 -49.29 16 13 Si 0.94 44.76 29.55 68.60 2.03 46.79 16 14 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 15 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 16 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 17 N -0.69 -22.90 3.80 -442.55 -1.68 -24.58 16 18 C 0.53 19.65 7.79 87.66 0.68 20.33 16 19 O -0.59 -24.57 15.64 -3.03 -0.05 -24.62 16 20 C -0.14 -4.77 6.07 29.85 0.18 -4.59 16 21 C 0.09 2.86 4.03 71.98 0.29 3.15 16 22 O -0.32 -10.44 10.14 -92.89 -0.94 -11.39 16 23 C 0.11 3.03 6.69 22.50 0.15 3.18 16 24 C -0.19 -4.88 9.04 22.36 0.20 -4.68 16 25 C -0.11 -2.54 10.02 22.30 0.22 -2.32 16 26 C 0.04 0.95 7.30 22.37 0.16 1.12 16 27 F -0.15 -3.39 17.27 44.97 0.78 -2.61 16 28 C -0.11 -2.22 10.02 22.30 0.22 -2.00 16 29 C -0.13 -3.15 9.98 22.36 0.22 -2.93 16 30 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.38 16.41 5.70 -92.71 -0.53 15.88 16 39 H 0.25 13.23 8.31 -92.71 -0.77 12.46 16 40 H 0.41 13.67 6.51 -92.71 -0.60 13.07 16 41 H 0.10 4.26 7.86 -2.39 -0.02 4.24 16 42 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 43 H 0.08 2.30 7.63 -2.39 -0.02 2.29 16 44 H 0.05 1.92 7.61 -2.39 -0.02 1.90 16 45 H 0.14 3.56 6.30 -2.91 -0.02 3.54 16 46 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 47 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 48 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -60.56 400.44 4.40 -56.17 By element: Atomic # 1 Polarization: 43.11 SS G_CDS: -0.16 Total: 42.95 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: 5.39 Total: -1.30 kcal Atomic # 7 Polarization: -103.34 SS G_CDS: -2.65 Total: -105.98 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: -0.99 Total: -36.01 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.78 Total: -2.61 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -60.56 4.40 -56.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135357504.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.044 kcal (2) G-P(sol) polarization free energy of solvation -60.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds