Wall clock time and date at job start Tue Mar 31 2020 21:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47474 * 2 1 4 4 C 1.35710 * 117.00242 * 180.02562 * 3 2 1 5 5 C 1.38923 * 120.15708 * 270.22618 * 4 3 2 6 6 F 1.35102 * 119.97630 * 0.04659 * 5 4 3 7 7 C 1.38201 * 120.04169 * 180.29675 * 5 4 3 8 8 C 1.38562 * 120.36718 * 359.72110 * 7 5 4 9 9 C 1.37750 * 120.31589 * 0.02678 * 8 7 5 10 10 C 1.39758 * 119.95346 * 359.97108 * 9 8 7 11 11 C 1.47535 * 120.17973 * 180.02562 * 10 9 8 12 12 O 1.21591 * 119.99755 * 185.38504 * 11 10 9 13 13 N 1.34776 * 120.00093 * 5.38921 * 11 10 9 14 14 C 1.46505 * 119.99778 * 185.15622 * 13 11 10 15 15 H 1.08999 * 109.47511 * 32.13771 * 14 13 11 16 16 C 1.53002 * 109.47195 * 272.13296 * 14 13 11 17 17 C 1.52997 * 109.47033 * 152.13862 * 14 13 11 18 18 C 1.53006 * 109.46744 * 294.64654 * 17 14 13 19 19 H 1.09001 * 109.47229 * 54.15008 * 18 17 14 20 20 C 1.53001 * 109.47142 * 294.14846 * 18 17 14 21 21 N 1.46506 * 109.47155 * 174.15069 * 18 17 14 22 22 C 1.36940 * 119.99839 * 207.78889 * 21 18 17 23 23 H 1.07995 * 120.00046 * 4.97447 * 22 21 18 24 24 C 1.38808 * 119.99693 * 184.97263 * 22 21 18 25 25 N 1.31622 * 119.99981 * 184.57077 * 24 22 21 26 26 Si 1.86807 * 120.00263 * 4.57320 * 24 22 21 27 27 H 1.48503 * 109.47131 * 93.94043 * 26 24 22 28 28 H 1.48497 * 109.47360 * 213.94195 * 26 24 22 29 29 H 1.48505 * 109.46920 * 333.94559 * 26 24 22 30 30 H 1.08999 * 109.46642 * 60.00254 * 1 2 3 31 31 H 1.09001 * 109.47174 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46960 * 300.00614 * 1 2 3 33 33 H 1.08995 * 109.46960 * 239.99386 * 2 1 3 34 34 H 1.09005 * 109.46931 * 119.99449 * 2 1 3 35 35 H 1.08005 * 119.81590 * 179.74336 * 7 5 4 36 36 H 1.08001 * 119.83590 * 179.97438 * 8 7 5 37 37 H 1.08007 * 120.02329 * 179.97438 * 9 8 7 38 38 H 0.96996 * 120.00434 * 5.16040 * 13 11 10 39 39 H 1.09004 * 109.46792 * 59.99889 * 16 14 13 40 40 H 1.08996 * 109.47406 * 180.02562 * 16 14 13 41 41 H 1.08999 * 109.47278 * 300.00618 * 16 14 13 42 42 H 1.09000 * 109.47176 * 174.64829 * 17 14 13 43 43 H 1.08996 * 109.47429 * 54.64146 * 17 14 13 44 44 H 1.08994 * 109.47301 * 59.99985 * 20 18 17 45 45 H 1.09002 * 109.47143 * 180.02562 * 20 18 17 46 46 H 1.09001 * 109.47190 * 300.00185 * 20 18 17 47 47 H 0.97001 * 119.99622 * 27.78192 * 21 18 17 48 48 H 0.97004 * 119.99790 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3518 1.5250 -0.0005 5 6 4.0449 1.6116 1.2004 6 9 3.3791 1.5177 2.3722 7 6 5.4141 1.7988 1.1971 8 6 6.1050 1.8955 -0.0001 9 6 5.4335 1.8066 -1.1996 10 6 4.0489 1.6172 -1.2118 11 6 3.3248 1.5207 -2.4936 12 8 2.1107 1.4545 -2.5024 13 7 4.0090 1.5059 -3.6546 14 6 3.2881 1.5241 -4.9299 15 1 2.3648 2.0925 -4.8174 16 6 2.9566 0.0904 -5.3490 17 6 4.1627 2.1790 -6.0008 18 6 4.3838 3.6515 -5.6484 19 1 4.7842 3.7269 -4.6374 20 6 3.0517 4.4001 -5.7265 21 7 5.3326 4.2431 -6.5950 22 6 6.1157 5.2985 -6.2100 23 1 6.0926 5.6431 -5.1868 24 6 6.9392 5.9253 -7.1351 25 7 7.7580 6.8799 -6.7468 26 14 6.8855 5.4140 -8.9310 27 1 5.9444 6.2948 -9.6685 28 1 8.2428 5.5355 -9.5211 29 1 6.4265 4.0053 -9.0311 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 5.9487 1.8697 2.1329 36 1 7.1750 2.0422 0.0073 37 1 5.9767 1.8830 -2.1300 38 1 4.9786 1.4831 -3.6460 39 1 2.3335 -0.3762 -4.5860 40 1 2.4207 0.1039 -6.2980 41 1 3.8798 -0.4779 -5.4615 42 1 3.6667 2.1076 -6.9688 43 1 5.1245 1.6682 -6.0468 44 1 2.3457 3.9600 -5.0223 45 1 3.2092 5.4491 -5.4758 46 1 2.6512 4.3246 -6.7374 47 1 5.4061 3.8872 -7.4943 48 1 8.3338 7.3177 -7.3932 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135779308.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:23 Heat of formation + Delta-G solvation = -84.857290 kcal Electronic energy + Delta-G solvation = -30056.413144 eV Core-core repulsion = 25833.622370 eV Total energy + Delta-G solvation = -4222.790773 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.13735 -40.68925 -39.02007 -37.67911 -36.95506 -34.76248 -32.52984 -32.08413 -31.64071 -30.19926 -29.61469 -29.07270 -26.39805 -24.68586 -23.55907 -23.45485 -22.51274 -21.48485 -20.64015 -19.86983 -18.72871 -17.85779 -17.58044 -17.14542 -16.31507 -16.14027 -15.90991 -15.38818 -15.21472 -15.04059 -14.75243 -14.48978 -14.27012 -14.17060 -13.65587 -13.53241 -13.26518 -12.89920 -12.70803 -12.64758 -12.62950 -12.31117 -12.23284 -12.10868 -11.98253 -11.79185 -11.74034 -11.50976 -11.30125 -11.02897 -10.67272 -10.54825 -10.21505 -10.16492 -9.97134 -9.75592 -9.61147 -9.32832 -8.99454 -8.95200 -8.93697 -7.28929 -5.79432 -3.14691 0.37368 0.70820 2.61945 3.03112 3.18921 3.33220 3.38656 3.43543 3.57291 3.94012 4.36860 4.50992 4.56429 4.65184 4.80004 4.85405 4.90350 4.99617 5.05588 5.15504 5.17958 5.27945 5.44972 5.47144 5.54492 5.57761 5.62123 5.64404 5.70634 5.72158 5.79673 5.83294 5.91608 5.95681 6.00064 6.10286 6.16950 6.22748 6.27534 6.40235 6.51086 6.58853 6.82603 7.02059 7.26943 7.50067 7.98690 8.20568 8.39918 9.19521 9.91872 10.12432 11.38897 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014067 B = 0.002977 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.047761 B = 9403.758611 C =10686.183055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.074 3.926 3 O -0.309 6.309 4 C 0.123 3.877 5 C 0.068 3.932 6 F -0.130 7.130 7 C -0.119 4.119 8 C -0.102 4.102 9 C -0.080 4.080 10 C -0.129 4.129 11 C 0.558 3.442 12 O -0.516 6.516 13 N -0.714 5.714 14 C 0.144 3.856 15 H 0.095 0.905 16 C -0.161 4.161 17 C -0.137 4.137 18 C 0.177 3.823 19 H 0.056 0.944 20 C -0.168 4.168 21 N -0.751 5.751 22 C -0.241 4.241 23 H 0.089 0.911 24 C 0.004 3.996 25 N -0.934 5.934 26 Si 0.888 3.112 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.278 1.278 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.400 0.600 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.041 0.959 45 H 0.056 0.944 46 H 0.044 0.956 47 H 0.362 0.638 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.754 -18.065 13.918 24.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.000 4.000 3 O -0.225 6.225 4 C 0.076 3.924 5 C 0.048 3.952 6 F -0.109 7.109 7 C -0.138 4.138 8 C -0.120 4.120 9 C -0.099 4.099 10 C -0.133 4.133 11 C 0.344 3.656 12 O -0.392 6.392 13 N -0.367 5.367 14 C 0.040 3.960 15 H 0.113 0.887 16 C -0.219 4.219 17 C -0.176 4.176 18 C 0.068 3.932 19 H 0.074 0.926 20 C -0.228 4.228 21 N -0.394 5.394 22 C -0.371 4.371 23 H 0.106 0.894 24 C -0.192 4.192 25 N -0.582 5.582 26 Si 0.718 3.282 27 H -0.213 1.213 28 H -0.219 1.219 29 H -0.205 1.205 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.162 0.838 36 H 0.163 0.837 37 H 0.160 0.840 38 H 0.236 0.764 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.060 0.940 45 H 0.075 0.925 46 H 0.063 0.937 47 H 0.195 0.805 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.709 -17.774 14.051 24.274 hybrid contribution 0.680 -0.259 -1.120 1.336 sum -8.029 -18.033 12.931 23.598 Atomic orbital electron populations 1.21700 0.92848 1.02234 1.03623 1.22635 0.96052 0.81296 0.99974 1.86051 1.15227 1.27433 1.93803 1.18631 0.84455 0.99309 0.89981 1.18001 0.90505 1.05824 0.80893 1.91512 1.80745 1.93716 1.44914 1.21302 0.91752 1.00222 1.00497 1.21030 1.01021 0.99078 0.90877 1.21443 0.92339 0.96565 0.99549 1.20332 0.93940 1.05698 0.93353 1.17857 0.87251 0.77211 0.83265 1.90814 1.12905 1.48349 1.87154 1.46016 1.10430 1.74834 1.05412 1.21073 0.96501 0.96363 0.82055 0.88697 1.22169 1.01635 0.96530 1.01592 1.22268 0.99779 0.97602 0.97976 1.20172 0.89546 0.89108 0.94348 0.92609 1.22474 0.98455 1.01744 1.00158 1.42891 1.45306 1.38952 1.12270 1.19068 1.15534 1.05777 0.96745 0.89355 1.24699 0.98891 0.98096 0.97530 1.69712 1.27196 1.27656 1.33604 0.86505 0.76809 0.77860 0.86980 1.21255 1.21875 1.20498 0.90930 0.90918 0.91926 0.92672 0.93595 0.83817 0.83748 0.84024 0.76419 0.92367 0.91633 0.92592 0.90653 0.91167 0.93975 0.92518 0.93673 0.80500 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.28 37.16 0.38 -1.05 16 2 C 0.07 0.85 6.21 37.16 0.23 1.08 16 3 O -0.31 -4.43 8.29 -40.66 -0.34 -4.77 16 4 C 0.12 1.61 5.74 -38.65 -0.22 1.39 16 5 C 0.07 0.78 7.30 -39.34 -0.29 0.49 16 6 F -0.13 -1.58 17.11 2.25 0.04 -1.55 16 7 C -0.12 -1.04 10.01 -39.48 -0.40 -1.44 16 8 C -0.10 -0.84 10.02 -39.64 -0.40 -1.23 16 9 C -0.08 -0.78 9.51 -39.19 -0.37 -1.15 16 10 C -0.13 -1.60 5.88 -104.86 -0.62 -2.21 16 11 C 0.56 7.69 7.73 -12.47 -0.10 7.59 16 12 O -0.52 -8.49 13.95 -16.54 -0.23 -8.72 16 13 N -0.71 -8.58 4.36 -54.84 -0.24 -8.82 16 14 C 0.14 1.80 2.46 -67.93 -0.17 1.64 16 15 H 0.10 1.35 5.79 -51.93 -0.30 1.05 16 16 C -0.16 -1.71 9.51 37.16 0.35 -1.36 16 17 C -0.14 -1.91 4.43 -26.73 -0.12 -2.02 16 18 C 0.18 3.21 2.92 -67.92 -0.20 3.01 16 19 H 0.06 1.05 7.53 -51.93 -0.39 0.66 16 20 C -0.17 -2.99 9.29 37.16 0.35 -2.65 16 21 N -0.75 -16.95 4.88 -53.42 -0.26 -17.21 16 22 C -0.24 -6.59 10.41 -15.06 -0.16 -6.75 16 23 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 24 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 25 N -0.93 -28.84 13.97 55.49 0.78 -28.07 16 26 Si 0.89 21.74 27.99 -169.99 -4.76 16.98 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 H -0.28 -6.29 6.17 56.52 0.35 -5.94 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.64 7.70 -51.93 -0.40 0.24 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 36 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.14 1.14 6.48 -52.48 -0.34 0.80 16 38 H 0.40 4.11 6.74 -40.82 -0.27 3.83 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.04 0.68 6.48 -51.93 -0.34 0.34 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.36 8.06 5.57 -40.82 -0.23 7.83 16 48 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 396.47 15.07 5.97 5.97 Total: -1.00 -33.58 396.47 -8.23 -41.81 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -7.38 Total: 9.03 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -1.81 Total: -4.67 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.28 Total: -54.09 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.57 Total: -13.49 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.76 Total: 16.98 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.58 -8.23 -41.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135779308.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.052 kcal (2) G-P(sol) polarization free energy of solvation -33.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds