Wall clock time and date at job start Tue Mar 31 2020 21:36:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 O 1.42902 * 109.46859 * 2 1
4 4 C 1.35709 * 116.99558 * 180.02562 * 3 2 1
5 5 C 1.38916 * 120.15985 * 269.97640 * 4 3 2
6 6 F 1.35105 * 119.97700 * 0.02562 * 5 4 3
7 7 C 1.38214 * 120.04655 * 180.02562 * 5 4 3
8 8 C 1.38558 * 120.36244 * 0.02562 * 7 5 4
9 9 C 1.37765 * 120.31834 * 359.72226 * 8 7 5
10 10 C 1.39751 * 119.94962 * 0.53059 * 9 8 7
11 11 C 1.47544 * 120.18232 * 179.74382 * 10 9 8
12 12 O 1.21584 * 120.00053 * 179.72749 * 11 10 9
13 13 N 1.34779 * 119.99469 * 359.72634 * 11 10 9
14 14 C 1.46496 * 119.99550 * 180.02562 * 13 11 10
15 15 H 1.09004 * 109.47509 * 324.99724 * 14 13 11
16 16 C 1.52999 * 109.47410 * 85.00095 * 14 13 11
17 17 C 1.52998 * 109.47164 * 205.00192 * 14 13 11
18 18 C 1.52998 * 109.47384 * 64.99625 * 17 14 13
19 19 H 1.09003 * 109.47082 * 305.00221 * 18 17 14
20 20 C 1.52995 * 109.47443 * 185.00170 * 18 17 14
21 21 N 1.46498 * 109.47009 * 65.00045 * 18 17 14
22 22 C 1.36935 * 120.00239 * 204.99963 * 21 18 17
23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 18
24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 18
25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21
26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21
27 27 H 1.48501 * 109.47364 * 179.72253 * 26 24 22
28 28 H 1.48508 * 109.46883 * 299.72375 * 26 24 22
29 29 H 1.48497 * 109.46870 * 59.72186 * 26 24 22
30 30 H 1.09004 * 109.47556 * 60.00098 * 1 2 3
31 31 H 1.09001 * 109.46992 * 179.97438 * 1 2 3
32 32 H 1.09000 * 109.46989 * 299.99504 * 1 2 3
33 33 H 1.09000 * 109.46989 * 240.00496 * 2 1 3
34 34 H 1.08999 * 109.47138 * 120.00109 * 2 1 3
35 35 H 1.07996 * 119.82133 * 179.97438 * 7 5 4
36 36 H 1.08000 * 119.83866 * 179.97438 * 8 7 5
37 37 H 1.07998 * 120.02315 * 180.29883 * 9 8 7
38 38 H 0.96994 * 120.00258 * 0.02562 * 13 11 10
39 39 H 1.09004 * 109.47346 * 179.97438 * 16 14 13
40 40 H 1.09003 * 109.47191 * 299.99550 * 16 14 13
41 41 H 1.08996 * 109.47126 * 60.00048 * 16 14 13
42 42 H 1.08997 * 109.46877 * 305.00014 * 17 14 13
43 43 H 1.08999 * 109.47306 * 185.00166 * 17 14 13
44 44 H 1.09004 * 109.47411 * 179.97438 * 20 18 17
45 45 H 1.08996 * 109.47329 * 300.00343 * 20 18 17
46 46 H 1.09003 * 109.46933 * 60.00266 * 20 18 17
47 47 H 0.97004 * 119.99747 * 25.00702 * 21 18 17
48 48 H 0.97000 * 120.00481 * 0.27542 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0062 1.3473 0.0000
4 6 3.3516 1.5251 -0.0005
5 6 4.0440 1.6168 1.2003
6 9 3.3776 1.5285 2.3722
7 6 5.4142 1.7984 1.1970
8 6 6.1056 1.8906 -0.0002
9 6 5.4347 1.7964 -1.1998
10 6 4.0486 1.6181 -1.2119
11 6 3.3242 1.5223 -2.4937
12 8 2.1190 1.3622 -2.5003
13 7 3.9986 1.6122 -3.6571
14 6 3.2793 1.5176 -4.9298
15 1 2.4533 0.8135 -4.8289
16 6 2.7320 2.8949 -5.3099
17 6 4.2348 1.0298 -6.0206
18 6 4.6852 -0.3975 -5.7032
19 1 5.1160 -0.4284 -4.7024
20 6 5.7352 -0.8400 -6.7242
21 7 3.5321 -1.2989 -5.7665
22 6 3.5386 -2.4698 -5.0566
23 1 4.3936 -2.7286 -4.4495
24 6 2.4462 -3.3242 -5.1170
25 7 1.4020 -3.0062 -5.8524
26 14 2.4546 -4.9212 -4.1479
27 1 1.1782 -5.6451 -4.3756
28 1 3.5901 -5.7665 -4.5968
29 1 2.6024 -4.6214 -2.7011
30 1 -0.3634 0.5138 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3633 0.5138 0.8900
33 1 1.8933 -0.5138 -0.8900
34 1 1.8933 -0.5138 0.8900
35 1 5.9487 1.8696 2.1327
36 1 7.1761 2.0329 0.0071
37 1 5.9790 1.8641 -2.1301
38 1 4.9602 1.7396 -3.6518
39 1 2.1971 2.8246 -6.2571
40 1 2.0511 3.2424 -4.5328
41 1 3.5579 3.5989 -5.4109
42 1 5.1050 1.6849 -6.0609
43 1 3.7245 1.0441 -6.9837
44 1 6.0564 -1.8567 -6.4978
45 1 5.3045 -0.8091 -7.7250
46 1 6.5932 -0.1693 -6.6770
47 1 2.7641 -1.0663 -6.3115
48 1 1.3973 -2.1768 -6.3554
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001135779309.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:36:26
Heat of formation + Delta-G solvation = -109.717629 kcal
Electronic energy + Delta-G solvation = -30812.067583 eV
Core-core repulsion = 26588.198784 eV
Total energy + Delta-G solvation = -4223.868799 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-50.02766 -41.62960 -40.01293 -38.55378 -38.30661 -36.23548 -34.22602 -33.03724
-32.82423 -31.06587 -30.46383 -30.14297 -27.67352 -25.66133 -25.40423 -24.34972
-23.44194 -22.60644 -21.77416 -21.34305 -19.69638 -19.40730 -18.67201 -18.10718
-17.31061 -17.10513 -16.98791 -16.65888 -16.20346 -16.10262 -15.97265 -15.84530
-15.49172 -15.47705 -15.07961 -14.69094 -14.43348 -14.39701 -13.69316 -13.58633
-13.49537 -13.43244 -13.20303 -13.10011 -12.94582 -12.91686 -12.78230 -12.67543
-12.53773 -12.41662 -12.18658 -11.92773 -11.86882 -11.57780 -11.18082 -11.15928
-10.91181 -10.78341 -10.22406 -9.93816 -9.77707 -9.04481 -8.33893 -5.25229
-0.46234 -0.10564 1.51028 1.61363 1.75456 1.76939 2.08227 2.29691
2.70022 2.74489 3.08536 3.44565 3.54438 3.71471 3.76347 3.83256
3.88262 4.00229 4.05586 4.08700 4.12169 4.25212 4.28419 4.30710
4.46590 4.60492 4.66098 4.71729 4.75745 4.77186 4.83845 4.86811
4.92798 4.96415 5.02598 5.03439 5.09734 5.14377 5.17508 5.26706
5.34907 5.54682 5.55332 5.56841 5.64828 6.33100 6.53801 6.56767
7.16298 7.27810 8.07070 8.18136 9.18185
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.009164 B = 0.004397 C = 0.003682
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3054.586412 B = 6366.359904 C = 7602.688539
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.077 3.923
3 O -0.334 6.334
4 C 0.086 3.914
5 C 0.050 3.950
6 F -0.140 7.140
7 C -0.104 4.104
8 C -0.086 4.086
9 C -0.075 4.075
10 C -0.150 4.150
11 C 0.546 3.454
12 O -0.561 6.561
13 N -0.697 5.697
14 C 0.150 3.850
15 H 0.042 0.958
16 C -0.151 4.151
17 C -0.118 4.118
18 C 0.168 3.832
19 H 0.043 0.957
20 C -0.155 4.155
21 N -0.743 5.743
22 C -0.312 4.312
23 H 0.060 0.940
24 C -0.108 4.108
25 N -0.978 5.978
26 Si 1.115 2.885
27 H -0.294 1.294
28 H -0.274 1.274
29 H -0.286 1.286
30 H 0.046 0.954
31 H 0.089 0.911
32 H 0.077 0.923
33 H 0.027 0.973
34 H 0.061 0.939
35 H 0.179 0.821
36 H 0.193 0.807
37 H 0.168 0.832
38 H 0.411 0.589
39 H 0.069 0.931
40 H 0.034 0.966
41 H 0.085 0.915
42 H 0.112 0.888
43 H 0.076 0.924
44 H 0.027 0.973
45 H 0.040 0.960
46 H 0.081 0.919
47 H 0.355 0.645
48 H 0.242 0.758
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.778 14.687 11.097 23.606
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C 0.003 3.997
3 O -0.252 6.252
4 C 0.040 3.960
5 C 0.031 3.969
6 F -0.119 7.119
7 C -0.123 4.123
8 C -0.103 4.103
9 C -0.093 4.093
10 C -0.154 4.154
11 C 0.333 3.667
12 O -0.439 6.439
13 N -0.350 5.350
14 C 0.045 3.955
15 H 0.060 0.940
16 C -0.209 4.209
17 C -0.156 4.156
18 C 0.061 3.939
19 H 0.061 0.939
20 C -0.215 4.215
21 N -0.386 5.386
22 C -0.444 4.444
23 H 0.078 0.922
24 C -0.299 4.299
25 N -0.627 5.627
26 Si 0.942 3.058
27 H -0.220 1.220
28 H -0.200 1.200
29 H -0.213 1.213
30 H 0.065 0.935
31 H 0.107 0.893
32 H 0.096 0.904
33 H 0.045 0.955
34 H 0.079 0.921
35 H 0.196 0.804
36 H 0.210 0.790
37 H 0.186 0.814
38 H 0.249 0.751
39 H 0.088 0.912
40 H 0.053 0.947
41 H 0.104 0.896
42 H 0.130 0.870
43 H 0.094 0.906
44 H 0.046 0.954
45 H 0.059 0.941
46 H 0.099 0.901
47 H 0.187 0.813
48 H 0.053 0.947
Dipole moment (debyes) X Y Z Total
from point charges 13.076 13.279 11.612 21.958
hybrid contribution 0.129 0.917 -0.559 1.082
sum 13.206 14.196 11.053 22.318
Atomic orbital electron populations
1.21668 0.91895 1.03356 1.02733 1.22621 0.96941 0.80836 0.99300
1.85948 1.17004 1.28157 1.94043 1.19117 0.84330 1.00996 0.91579
1.18277 0.91851 1.07016 0.79794 1.91479 1.81292 1.93986 1.45119
1.21746 0.89951 0.97975 1.02632 1.21528 1.02714 0.96789 0.89292
1.21741 0.90337 0.95626 1.01609 1.20369 0.95778 1.07463 0.91768
1.18383 0.86977 0.76680 0.84663 1.90818 1.15959 1.49315 1.87843
1.45696 1.11579 1.73181 1.04578 1.20805 0.94943 0.96968 0.82760
0.94001 1.22080 1.01584 0.96093 1.01137 1.22100 1.00073 0.95984
0.97477 1.20469 0.87584 0.88968 0.96912 0.93931 1.22289 0.99368
1.00481 0.99338 1.42619 1.17895 1.21730 1.56317 1.20222 1.02871
0.98628 1.22727 0.92219 1.26909 0.93115 1.06863 1.03020 1.70976
1.31829 1.25939 1.33963 0.82781 0.75788 0.72710 0.74548 1.22047
1.20022 1.21271 0.93455 0.89264 0.90399 0.95495 0.92125 0.80388
0.79028 0.81443 0.75080 0.91156 0.94711 0.89619 0.87020 0.90581
0.95380 0.94084 0.90067 0.81292 0.94731
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.47 10.28 71.98 0.74 -3.73 16
2 C 0.08 2.77 6.13 71.98 0.44 3.21 16
3 O -0.33 -12.62 8.34 -69.36 -0.58 -13.20 16
4 C 0.09 2.74 5.74 22.88 0.13 2.87 16
5 C 0.05 1.27 7.30 22.43 0.16 1.43 16
6 F -0.14 -3.82 17.11 44.97 0.77 -3.05 16
7 C -0.10 -1.59 10.01 22.34 0.22 -1.37 16
8 C -0.09 -0.98 10.02 22.23 0.22 -0.76 16
9 C -0.07 -1.27 9.53 22.52 0.21 -1.06 16
10 C -0.15 -4.32 5.88 -20.01 -0.12 -4.44 16
11 C 0.55 19.43 7.73 86.70 0.67 20.10 16
12 O -0.56 -25.79 13.67 16.95 0.23 -25.56 16
13 N -0.70 -19.81 4.40 -445.70 -1.96 -21.77 16
14 C 0.15 4.76 2.52 44.99 0.11 4.87 16
15 H 0.04 1.87 7.05 -2.39 -0.02 1.86 16
16 C -0.15 -4.00 9.48 71.98 0.68 -3.31 16
17 C -0.12 -3.21 4.29 30.59 0.13 -3.08 16
18 C 0.17 6.03 2.84 44.99 0.13 6.16 16
19 H 0.04 1.56 7.56 -2.39 -0.02 1.54 16
20 C -0.16 -4.92 9.49 71.98 0.68 -4.24 16
21 N -0.74 -36.66 4.49 -322.95 -1.45 -38.11 16
22 C -0.31 -17.69 9.93 84.03 0.83 -16.86 16
23 H 0.06 3.32 7.83 -2.91 -0.02 3.30 16
24 C -0.11 -6.46 5.50 84.86 0.47 -5.99 16
25 N -0.98 -63.39 13.70 21.65 0.30 -63.10 16
26 Si 1.12 54.34 29.92 68.60 2.05 56.39 16
27 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16
28 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16
29 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16
30 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16
31 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16
32 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16
33 H 0.03 1.14 7.50 -2.39 -0.02 1.12 16
34 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16
35 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16
36 H 0.19 0.39 8.06 -2.91 -0.02 0.37 16
37 H 0.17 1.70 6.40 -2.91 -0.02 1.68 16
38 H 0.41 8.03 6.63 -92.71 -0.61 7.41 16
39 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16
40 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16
41 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16
42 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16
43 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16
44 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16
45 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16
46 H 0.08 1.85 8.14 -2.39 -0.02 1.84 16
47 H 0.36 18.82 6.63 -92.71 -0.61 18.21 16
48 H 0.24 15.68 6.77 -92.71 -0.63 15.05 16
Total: -1.00 -84.73 399.84 4.98 -79.75
By element:
Atomic # 1 Polarization: 34.95 SS G_CDS: -0.11 Total: 34.84 kcal
Atomic # 6 Polarization: -11.93 SS G_CDS: 5.73 Total: -6.20 kcal
Atomic # 7 Polarization: -119.87 SS G_CDS: -3.11 Total: -122.98 kcal
Atomic # 8 Polarization: -38.41 SS G_CDS: -0.35 Total: -38.76 kcal
Atomic # 9 Polarization: -3.82 SS G_CDS: 0.77 Total: -3.05 kcal
Atomic # 14 Polarization: 54.34 SS G_CDS: 2.05 Total: 56.39 kcal
Total: -84.73 4.98 -79.75 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001135779309.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.963 kcal
(2) G-P(sol) polarization free energy of solvation -84.734 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.697 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.980 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.754 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.718 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds