Wall clock time and date at job start Tue Mar 31 2020 20:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21283 * 120.00603 * 359.97438 * 9 8 5 11 11 C 1.50704 * 119.99854 * 180.02562 * 9 8 5 12 12 C 1.52999 * 109.47027 * 179.97438 * 11 9 8 13 13 O 1.42903 * 109.47238 * 180.02562 * 12 11 9 14 14 C 1.35949 * 117.00382 * 180.02562 * 13 12 11 15 15 C 1.38666 * 120.05917 * 0.02562 * 14 13 12 16 16 C 1.38183 * 119.96480 * 179.97438 * 15 14 13 17 17 C 1.38255 * 120.09933 * 0.02562 * 16 15 14 18 18 C 1.38262 * 120.12552 * 0.02562 * 17 16 15 19 19 C 1.38333 * 120.02785 * 359.69990 * 18 17 16 20 20 F 1.35101 * 120.04859 * 180.27834 * 19 18 17 21 21 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 22 22 C 1.36935 * 120.00239 * 275.00034 * 21 2 1 23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 2 24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 2 25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46758 * 269.72270 * 26 24 22 28 28 H 1.48499 * 109.47026 * 29.72118 * 26 24 22 29 29 H 1.48496 * 109.47474 * 149.72153 * 26 24 22 30 30 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 32 32 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 33 33 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 34 34 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 35 35 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 36 36 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 37 37 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 38 38 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 39 39 H 1.08993 * 109.46986 * 300.00093 * 11 9 8 40 40 H 1.09003 * 109.46775 * 59.99881 * 11 9 8 41 41 H 1.09000 * 109.47634 * 300.00460 * 12 11 9 42 42 H 1.09003 * 109.47199 * 60.00436 * 12 11 9 43 43 H 1.07992 * 120.01660 * 359.95643 * 15 14 13 44 44 H 1.08002 * 119.94900 * 179.97438 * 16 15 14 45 45 H 1.08003 * 119.93986 * 179.97438 * 17 16 15 46 46 H 1.07999 * 119.98346 * 179.97438 * 18 17 16 47 47 H 0.97004 * 119.99747 * 95.00774 * 21 2 1 48 48 H 0.97000 * 120.00481 * 0.27542 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9356 0.4343 -0.5730 11 6 5.5550 2.6567 -1.2699 12 6 6.9698 2.8720 -0.7286 13 8 7.3431 4.2404 -0.9019 14 6 8.5806 4.6020 -0.4707 15 6 9.4180 3.6594 0.1064 16 6 10.6757 4.0290 0.5435 17 6 11.1005 5.3375 0.4068 18 6 10.2684 6.2808 -0.1671 19 6 9.0104 5.9154 -0.6116 20 9 8.1992 6.8356 -1.1776 21 7 2.0183 -0.6906 1.1962 22 6 2.1490 -0.0075 2.3758 23 1 1.8918 1.0403 2.4244 24 6 2.6122 -0.6617 3.5091 25 7 2.9205 -1.9400 3.4511 26 14 2.7899 0.2699 5.1184 27 1 4.1540 0.8503 5.2062 28 1 1.7835 1.3605 5.1727 29 1 2.5735 -0.6603 6.2554 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.7517 -1.7715 -1.2056 34 1 1.6054 -0.2617 -2.1369 35 1 5.1716 -1.3615 -2.5380 36 1 3.8002 -2.4818 -2.3594 37 1 3.6547 -1.0591 -3.4193 38 1 3.3284 1.4130 -1.9027 39 1 5.5290 2.9085 -2.3301 40 1 4.8577 3.2954 -0.7276 41 1 6.9954 2.6202 0.3316 42 1 7.6673 2.2333 -1.2706 43 1 9.0872 2.6371 0.2145 44 1 11.3275 3.2946 0.9934 45 1 12.0838 5.6236 0.7497 46 1 10.6024 7.3025 -0.2724 47 1 2.2490 -1.6318 1.1526 48 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136111778.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:55 Heat of formation + Delta-G solvation = -118.676798 kcal Electronic energy + Delta-G solvation = -29098.637143 eV Core-core repulsion = 24874.379845 eV Total energy + Delta-G solvation = -4224.257297 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.85790 -41.31531 -40.74770 -38.68758 -38.33395 -36.28464 -34.22175 -33.47888 -31.83277 -31.69205 -30.45705 -30.14964 -27.68715 -26.09990 -25.53429 -23.65919 -23.33665 -22.36433 -21.49974 -21.34067 -19.71825 -19.44715 -18.34973 -17.71895 -17.66443 -17.63676 -17.17762 -16.71499 -16.55462 -16.05022 -15.91826 -15.80022 -15.49721 -15.42640 -15.06103 -14.80615 -14.64427 -14.47724 -13.91466 -13.87990 -13.56803 -13.43337 -13.18482 -13.05053 -12.92082 -12.90153 -12.80139 -12.57922 -12.52372 -12.19557 -12.09453 -11.91946 -11.90849 -11.87380 -11.58389 -11.19096 -10.99102 -10.91304 -10.05821 -9.99132 -9.28815 -9.05990 -8.35333 -5.26903 0.08269 0.21561 1.52710 1.57733 1.63524 1.66731 1.76671 2.48231 2.56243 2.70073 3.18209 3.43495 3.51134 3.69916 3.74628 3.81829 3.82572 3.89234 3.99703 4.06744 4.15541 4.28623 4.29944 4.33144 4.45482 4.48596 4.60444 4.63572 4.68060 4.71146 4.75854 4.85155 4.93968 4.94440 5.00833 5.05880 5.15772 5.22222 5.26200 5.34483 5.39755 5.53005 5.56077 5.64486 5.65030 6.16644 6.53065 6.54934 7.15066 7.26669 8.05811 8.16579 9.17081 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010027 B = 0.002772 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.857257 B =10099.298135 C =11579.523661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.168 3.832 3 H 0.043 0.957 4 C -0.119 4.119 5 C 0.147 3.853 6 H 0.043 0.957 7 C -0.151 4.151 8 N -0.702 5.702 9 C 0.514 3.486 10 O -0.588 6.588 11 C -0.128 4.128 12 C 0.079 3.921 13 O -0.322 6.322 14 C 0.076 3.924 15 C -0.195 4.195 16 C -0.088 4.088 17 C -0.122 4.122 18 C -0.113 4.113 19 C 0.038 3.962 20 F -0.147 7.147 21 N -0.743 5.743 22 C -0.314 4.314 23 H 0.060 0.940 24 C -0.109 4.109 25 N -0.979 5.979 26 Si 1.121 2.879 27 H -0.293 1.293 28 H -0.272 1.272 29 H -0.293 1.293 30 H 0.041 0.959 31 H 0.027 0.973 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.039 0.961 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.415 0.585 39 H 0.135 0.865 40 H 0.116 0.884 41 H 0.056 0.944 42 H 0.073 0.927 43 H 0.136 0.864 44 H 0.157 0.843 45 H 0.170 0.830 46 H 0.167 0.833 47 H 0.356 0.644 48 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.071 14.468 -15.539 23.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.060 3.940 3 H 0.061 0.939 4 C -0.157 4.157 5 C 0.042 3.958 6 H 0.061 0.939 7 C -0.209 4.209 8 N -0.354 5.354 9 C 0.301 3.699 10 O -0.468 6.468 11 C -0.168 4.168 12 C 0.004 3.996 13 O -0.236 6.236 14 C 0.030 3.970 15 C -0.213 4.213 16 C -0.106 4.106 17 C -0.140 4.140 18 C -0.132 4.132 19 C 0.019 3.981 20 F -0.125 7.125 21 N -0.386 5.386 22 C -0.446 4.446 23 H 0.078 0.922 24 C -0.300 4.300 25 N -0.628 5.628 26 Si 0.947 3.053 27 H -0.221 1.221 28 H -0.197 1.197 29 H -0.219 1.219 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.127 0.873 35 H 0.058 0.942 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.252 0.748 39 H 0.153 0.847 40 H 0.134 0.866 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.154 0.846 44 H 0.175 0.825 45 H 0.188 0.812 46 H 0.184 0.816 47 H 0.187 0.813 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.764 14.186 -13.710 22.970 hybrid contribution -0.960 -0.398 -1.383 1.730 sum 10.804 13.788 -15.093 23.122 Atomic orbital electron populations 1.22299 0.97782 1.00776 1.00736 1.20475 0.92556 0.95275 0.85723 0.93850 1.22095 0.92934 1.02148 0.98540 1.20813 0.95428 0.81280 0.98267 0.93857 1.22082 1.00513 1.00154 0.98173 1.45803 1.16215 1.11524 1.61880 1.20695 0.82038 0.90250 0.76887 1.90724 1.52689 1.58316 1.45080 1.21398 0.96266 0.92659 1.06465 1.22400 0.96441 0.79510 1.01245 1.85980 1.29787 1.29641 1.78191 1.19297 0.85975 0.93349 0.98376 1.21458 0.96402 0.99661 1.03810 1.21453 0.94521 0.97724 0.96863 1.21387 1.01286 0.91944 0.99410 1.21395 0.90600 1.02815 0.98367 1.17403 0.91660 0.83977 1.05088 1.91455 1.72831 1.65054 1.83198 1.42622 1.79447 1.09359 1.07143 1.20271 1.39084 0.94864 0.90362 0.92158 1.26958 1.00341 0.97690 1.05004 1.70947 1.54495 1.09440 1.27955 0.82695 0.76408 0.73744 0.72418 1.22065 1.19692 1.21903 0.94021 0.95408 0.90287 0.90691 0.87284 0.94156 0.91330 0.89772 0.74796 0.84686 0.86618 0.92580 0.90879 0.84609 0.82522 0.81242 0.81576 0.81252 0.94623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.10 9.49 71.98 0.68 -4.42 16 2 C 0.17 6.06 2.84 44.99 0.13 6.19 16 3 H 0.04 1.60 7.56 -2.38 -0.02 1.59 16 4 C -0.12 -3.24 4.29 30.60 0.13 -3.11 16 5 C 0.15 4.48 2.52 45.00 0.11 4.59 16 6 H 0.04 1.87 7.05 -2.39 -0.02 1.85 16 7 C -0.15 -3.75 9.48 71.98 0.68 -3.07 16 8 N -0.70 -18.45 4.45 -442.51 -1.97 -20.42 16 9 C 0.51 15.76 7.79 87.66 0.68 16.44 16 10 O -0.59 -24.15 15.64 -3.04 -0.05 -24.19 16 11 C -0.13 -2.90 6.07 29.85 0.18 -2.72 16 12 C 0.08 2.07 4.03 71.98 0.29 2.36 16 13 O -0.32 -8.75 10.00 -92.98 -0.93 -9.68 16 14 C 0.08 1.94 6.69 22.53 0.15 2.09 16 15 C -0.19 -4.30 9.04 22.36 0.20 -4.10 16 16 C -0.09 -1.41 10.04 22.26 0.22 -1.19 16 17 C -0.12 -1.61 10.04 22.28 0.22 -1.39 16 18 C -0.11 -1.83 10.02 22.30 0.22 -1.61 16 19 C 0.04 0.90 7.31 22.45 0.16 1.07 16 20 F -0.15 -3.83 17.11 44.97 0.77 -3.06 16 21 N -0.74 -36.68 4.49 -322.94 -1.45 -38.13 16 22 C -0.31 -17.79 9.93 84.03 0.83 -16.96 16 23 H 0.06 3.37 7.83 -2.91 -0.02 3.35 16 24 C -0.11 -6.52 5.50 84.86 0.47 -6.05 16 25 N -0.98 -63.32 13.70 21.65 0.30 -63.03 16 26 Si 1.12 54.48 29.92 68.60 2.05 56.53 16 27 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 28 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 29 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 30 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.03 1.02 8.14 -2.39 -0.02 1.01 16 32 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.11 2.04 8.14 -2.39 -0.02 2.03 16 35 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.41 7.66 8.60 -92.71 -0.80 6.86 16 39 H 0.14 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.12 2.42 8.14 -2.39 -0.02 2.41 16 41 H 0.06 1.67 7.62 -2.39 -0.02 1.66 16 42 H 0.07 1.86 7.62 -2.39 -0.02 1.84 16 43 H 0.14 3.08 6.30 -2.91 -0.02 3.06 16 44 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 45 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 46 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 47 H 0.36 18.77 6.63 -92.71 -0.61 18.15 16 48 H 0.24 15.66 6.77 -92.71 -0.63 15.03 16 Total: -1.00 -80.83 403.30 3.81 -77.02 By element: Atomic # 1 Polarization: 37.10 SS G_CDS: -0.30 Total: 36.81 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: 5.38 Total: -11.86 kcal Atomic # 7 Polarization: -118.45 SS G_CDS: -3.12 Total: -121.57 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -0.98 Total: -33.87 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.77 Total: -3.06 kcal Atomic # 14 Polarization: 54.48 SS G_CDS: 2.05 Total: 56.53 kcal Total: -80.83 3.81 -77.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136111778.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.652 kcal (2) G-P(sol) polarization free energy of solvation -80.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds