Wall clock time and date at job start Tue Mar 31 2020 20:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46609 * 2 1 4 4 C 1.52993 * 109.47035 * 240.00284 * 2 1 3 5 5 C 1.53003 * 109.47032 * 174.99661 * 4 2 1 6 6 H 1.08991 * 109.47102 * 304.99692 * 5 4 2 7 7 C 1.53004 * 109.46922 * 184.99961 * 5 4 2 8 8 N 1.46491 * 109.47002 * 65.00223 * 5 4 2 9 9 C 1.34777 * 119.99826 * 204.99972 * 8 5 4 10 10 O 1.21284 * 120.00043 * 359.97438 * 9 8 5 11 11 C 1.50700 * 120.00111 * 179.97438 * 9 8 5 12 12 C 1.53004 * 109.47443 * 179.97438 * 11 9 8 13 13 O 1.42893 * 109.47267 * 180.02562 * 12 11 9 14 14 C 1.35956 * 117.00026 * 179.97438 * 13 12 11 15 15 C 1.38657 * 120.06128 * 359.97438 * 14 13 12 16 16 C 1.38184 * 119.96964 * 180.02562 * 15 14 13 17 17 C 1.38265 * 120.09281 * 359.97438 * 16 15 14 18 18 C 1.38248 * 120.12705 * 0.02562 * 17 16 15 19 19 C 1.38332 * 120.03366 * 359.97438 * 18 17 16 20 20 F 1.35103 * 120.05240 * 180.02562 * 19 18 17 21 21 N 1.46493 * 109.47313 * 119.99738 * 2 1 3 22 22 C 1.36936 * 120.00552 * 275.00188 * 21 2 1 23 23 H 1.08002 * 119.99819 * 0.02562 * 22 21 2 24 24 C 1.38813 * 120.00051 * 180.02562 * 22 21 2 25 25 N 1.31619 * 119.99909 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99755 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47070 * 90.00082 * 26 24 22 28 28 H 1.48507 * 109.46993 * 210.00089 * 26 24 22 29 29 H 1.48499 * 109.47171 * 329.99839 * 26 24 22 30 30 H 1.09005 * 109.47342 * 299.99737 * 1 2 3 31 31 H 1.08999 * 109.47373 * 59.99930 * 1 2 3 32 32 H 1.08998 * 109.46931 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47384 * 54.99596 * 4 2 1 34 34 H 1.09001 * 109.47078 * 295.00052 * 4 2 1 35 35 H 1.09004 * 109.47237 * 299.99910 * 7 5 4 36 36 H 1.08999 * 109.47176 * 59.99865 * 7 5 4 37 37 H 1.09001 * 109.47088 * 180.02562 * 7 5 4 38 38 H 0.96999 * 120.00702 * 24.99444 * 8 5 4 39 39 H 1.09007 * 109.47324 * 59.99956 * 11 9 8 40 40 H 1.09001 * 109.47308 * 299.99976 * 11 9 8 41 41 H 1.08994 * 109.46599 * 59.99619 * 12 11 9 42 42 H 1.09001 * 109.46881 * 300.00277 * 12 11 9 43 43 H 1.08004 * 120.01774 * 0.03769 * 15 14 13 44 44 H 1.08000 * 119.95526 * 180.27319 * 16 15 14 45 45 H 1.08001 * 119.93128 * 179.97438 * 17 16 15 46 46 H 1.07998 * 119.98480 * 180.02562 * 18 17 16 47 47 H 0.97006 * 119.99425 * 95.00493 * 21 2 1 48 48 H 0.96999 * 119.99656 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6131 -1.3137 6 1 3.8570 0.4359 -1.2678 7 6 4.0644 -1.2248 -2.6241 8 7 4.1537 -1.3340 -0.1826 9 6 5.3748 -0.9909 0.2732 10 8 5.9862 -0.0855 -0.2536 11 6 5.9803 -1.7321 1.4372 12 6 7.3600 -1.1497 1.7507 13 8 7.9345 -1.8529 2.8540 14 6 9.1692 -1.4571 3.2628 15 6 9.8142 -0.4144 2.6151 16 6 11.0694 -0.0140 3.0319 17 6 11.6832 -0.6514 4.0943 18 6 11.0437 -1.6915 4.7428 19 6 9.7871 -2.0966 4.3300 20 9 9.1616 -3.1126 4.9639 21 7 2.0184 -0.6905 1.1961 22 6 2.1492 -0.0075 2.3757 23 1 1.8919 1.0404 2.4244 24 6 2.6124 -0.6617 3.5090 25 7 2.9265 -1.9385 3.4495 26 14 2.7915 0.2703 5.1179 27 1 1.5242 0.1791 5.8865 28 1 3.8966 -0.3228 5.9132 29 1 3.0963 1.6955 4.8331 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6053 -0.2617 -2.1370 34 1 1.7516 -1.7714 -1.2056 35 1 3.7723 -2.2740 -2.6701 36 1 3.6262 -0.6885 -3.4658 37 1 5.1508 -1.1483 -2.6699 38 1 3.6648 -2.0583 0.2386 39 1 6.0810 -2.7874 1.1833 40 1 5.3350 -1.6283 2.3095 41 1 7.2597 -0.0944 2.0043 42 1 8.0051 -1.2539 0.8782 43 1 9.3357 0.0848 1.7855 44 1 11.5697 0.8010 2.5301 45 1 12.6644 -0.3366 4.4175 46 1 11.5251 -2.1874 5.5727 47 1 2.2491 -1.6317 1.1525 48 1 3.2505 -2.3956 4.2413 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136111780.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:01 Heat of formation + Delta-G solvation = -90.066828 kcal Electronic energy + Delta-G solvation = -29995.208498 eV Core-core repulsion = 25772.191822 eV Total energy + Delta-G solvation = -4223.016676 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.69002 -40.03992 -39.30396 -37.49800 -36.79566 -34.21916 -32.42217 -31.81330 -30.76473 -30.48468 -29.35441 -28.51314 -26.36495 -24.72998 -23.67426 -22.59978 -22.22019 -20.81243 -20.26382 -19.46499 -18.48781 -17.23212 -17.11247 -16.56604 -16.31404 -16.17318 -15.76253 -15.31199 -14.96881 -14.86807 -14.40149 -14.37878 -13.93463 -13.79516 -13.69715 -13.27801 -12.99238 -12.85742 -12.73661 -12.49355 -12.16748 -12.02899 -11.94105 -11.76918 -11.69628 -11.62364 -11.44529 -11.02048 -10.94677 -10.84734 -10.74730 -10.52762 -10.38764 -10.25892 -9.92246 -9.69738 -9.29653 -9.02997 -8.97778 -8.40054 -8.20137 -6.97319 -5.82651 -3.08993 1.04123 1.20118 2.98311 3.27401 3.42023 3.49084 3.50802 3.50906 3.94862 4.24916 4.57451 4.64729 4.74302 5.05449 5.07807 5.11023 5.18438 5.25738 5.34295 5.40923 5.46476 5.51222 5.53749 5.65609 5.69918 5.86728 5.90768 5.94387 5.97113 5.99202 6.07259 6.10249 6.12636 6.22403 6.28303 6.33409 6.39225 6.47812 6.53925 6.58586 6.64587 6.83670 7.03431 7.15043 7.37998 7.68347 8.14288 8.36909 8.83659 9.48598 10.02072 10.37722 11.39654 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011182 B = 0.003477 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.458235 B = 8051.988741 C = 9753.713794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.169 3.831 3 H 0.047 0.953 4 C -0.134 4.134 5 C 0.150 3.850 6 H 0.083 0.917 7 C -0.162 4.162 8 N -0.693 5.693 9 C 0.538 3.462 10 O -0.571 6.571 11 C -0.146 4.146 12 C 0.080 3.920 13 O -0.304 6.304 14 C 0.109 3.891 15 C -0.184 4.184 16 C -0.090 4.090 17 C -0.138 4.138 18 C -0.119 4.119 19 C 0.064 3.936 20 F -0.132 7.132 21 N -0.717 5.717 22 C -0.230 4.230 23 H 0.067 0.933 24 C -0.009 4.009 25 N -0.933 5.933 26 Si 0.896 3.104 27 H -0.291 1.291 28 H -0.290 1.290 29 H -0.284 1.284 30 H 0.052 0.948 31 H 0.035 0.965 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.407 0.593 39 H 0.095 0.905 40 H 0.133 0.867 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.141 0.859 44 H 0.130 0.870 45 H 0.131 0.869 46 H 0.139 0.861 47 H 0.378 0.622 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.545 -0.199 -6.450 13.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.059 3.941 3 H 0.065 0.935 4 C -0.172 4.172 5 C 0.045 3.955 6 H 0.101 0.899 7 C -0.221 4.221 8 N -0.345 5.345 9 C 0.325 3.675 10 O -0.451 6.451 11 C -0.185 4.185 12 C 0.005 3.995 13 O -0.217 6.217 14 C 0.062 3.938 15 C -0.203 4.203 16 C -0.108 4.108 17 C -0.156 4.156 18 C -0.138 4.138 19 C 0.044 3.956 20 F -0.110 7.110 21 N -0.360 5.360 22 C -0.361 4.361 23 H 0.085 0.915 24 C -0.204 4.204 25 N -0.582 5.582 26 Si 0.728 3.272 27 H -0.219 1.219 28 H -0.216 1.216 29 H -0.210 1.210 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.245 0.755 39 H 0.113 0.887 40 H 0.151 0.849 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.159 0.841 44 H 0.148 0.852 45 H 0.149 0.851 46 H 0.157 0.843 47 H 0.213 0.787 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.799 0.359 -6.599 13.524 hybrid contribution -0.352 -0.166 1.258 1.317 sum 11.447 0.193 -5.341 12.633 Atomic orbital electron populations 1.22425 0.99328 1.00731 0.99912 1.20280 0.91681 0.95710 0.86399 0.93460 1.22208 0.93967 1.01661 0.99395 1.20802 0.92538 0.97267 0.84905 0.89938 1.22208 1.01692 1.00853 0.97299 1.45904 1.17603 1.37533 1.33436 1.19951 0.81482 0.83018 0.83044 1.90617 1.62401 1.31714 1.60418 1.21512 0.95672 1.00733 1.00612 1.22530 0.94018 0.96256 0.86717 1.86122 1.27737 1.58022 1.49816 1.19088 0.86155 0.94560 0.94037 1.21321 0.97197 0.98716 1.03031 1.21020 0.94228 0.99213 0.96357 1.20879 1.00688 0.96879 0.97151 1.20987 0.92900 0.98654 1.01246 1.17054 0.92956 0.90922 0.94673 1.91515 1.82170 1.56755 1.80597 1.42455 1.78004 1.10155 1.05372 1.19192 1.35827 0.93798 0.87271 0.91509 1.24572 1.02392 0.95941 0.97540 1.69562 1.51337 1.08316 1.28992 0.86355 0.77364 0.78981 0.84547 1.21893 1.21641 1.21015 0.92884 0.94602 0.93599 0.90840 0.91711 0.92801 0.92153 0.92467 0.75522 0.88703 0.84906 0.91012 0.91543 0.84082 0.85160 0.85084 0.84290 0.78717 0.93412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.49 37.16 0.35 -2.41 16 2 C 0.17 3.06 2.89 -67.94 -0.20 2.87 16 3 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 4 C -0.13 -1.94 4.43 -26.73 -0.12 -2.06 16 5 C 0.15 2.32 2.57 -67.93 -0.17 2.14 16 6 H 0.08 1.45 7.58 -51.93 -0.39 1.06 16 7 C -0.16 -2.09 9.48 37.16 0.35 -1.74 16 8 N -0.69 -11.91 3.80 -53.81 -0.20 -12.12 16 9 C 0.54 10.06 7.79 -10.99 -0.09 9.98 16 10 O -0.57 -11.74 15.65 5.55 0.09 -11.65 16 11 C -0.15 -2.60 6.07 -27.88 -0.17 -2.77 16 12 C 0.08 1.33 4.03 37.16 0.15 1.48 16 13 O -0.30 -5.37 10.00 -19.60 -0.20 -5.57 16 14 C 0.11 1.70 6.69 -39.18 -0.26 1.44 16 15 C -0.18 -2.39 9.04 -39.45 -0.36 -2.75 16 16 C -0.09 -0.94 10.04 -39.59 -0.40 -1.34 16 17 C -0.14 -1.35 10.04 -39.57 -0.40 -1.75 16 18 C -0.12 -1.36 10.02 -39.54 -0.40 -1.75 16 19 C 0.06 0.95 7.31 -39.30 -0.29 0.66 16 20 F -0.13 -2.20 17.11 2.25 0.04 -2.16 16 21 N -0.72 -15.74 3.84 -53.43 -0.21 -15.94 16 22 C -0.23 -5.87 9.93 -15.06 -0.15 -6.02 16 23 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 24 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 25 N -0.93 -24.97 12.77 55.49 0.71 -24.27 16 26 Si 0.90 21.94 29.55 -169.99 -5.02 16.92 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 29 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.41 7.14 6.51 -40.82 -0.27 6.87 16 39 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.13 2.82 7.86 -51.93 -0.41 2.41 16 41 H 0.07 1.24 7.62 -51.93 -0.40 0.84 16 42 H 0.07 1.00 7.62 -51.93 -0.40 0.61 16 43 H 0.14 1.74 6.30 -52.48 -0.33 1.41 16 44 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 46 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 47 H 0.38 8.48 5.70 -40.82 -0.23 8.25 16 48 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 400.24 15.07 6.03 6.03 Total: -1.00 -29.27 400.24 -8.46 -37.72 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: -7.46 Total: 15.37 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -2.23 Total: -4.34 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: 0.30 Total: -52.32 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.11 Total: -17.22 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.27 -8.46 -37.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136111780.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.342 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds