Wall clock time and date at job start Tue Mar 31 2020 20:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46609 * 2 1 4 4 C 1.52993 * 109.47035 * 240.00284 * 2 1 3 5 5 C 1.53003 * 109.47032 * 174.99661 * 4 2 1 6 6 H 1.08991 * 109.47102 * 304.99692 * 5 4 2 7 7 C 1.53004 * 109.46922 * 184.99961 * 5 4 2 8 8 N 1.46491 * 109.47002 * 65.00223 * 5 4 2 9 9 C 1.34777 * 119.99826 * 204.99972 * 8 5 4 10 10 O 1.21284 * 120.00043 * 359.97438 * 9 8 5 11 11 C 1.50700 * 120.00111 * 179.97438 * 9 8 5 12 12 C 1.53004 * 109.47443 * 179.97438 * 11 9 8 13 13 O 1.42893 * 109.47267 * 180.02562 * 12 11 9 14 14 C 1.35956 * 117.00026 * 179.97438 * 13 12 11 15 15 C 1.38657 * 120.06128 * 359.97438 * 14 13 12 16 16 C 1.38184 * 119.96964 * 180.02562 * 15 14 13 17 17 C 1.38265 * 120.09281 * 359.97438 * 16 15 14 18 18 C 1.38248 * 120.12705 * 0.02562 * 17 16 15 19 19 C 1.38332 * 120.03366 * 359.97438 * 18 17 16 20 20 F 1.35103 * 120.05240 * 180.02562 * 19 18 17 21 21 N 1.46493 * 109.47313 * 119.99738 * 2 1 3 22 22 C 1.36936 * 120.00552 * 275.00188 * 21 2 1 23 23 H 1.08002 * 119.99819 * 0.02562 * 22 21 2 24 24 C 1.38813 * 120.00051 * 180.02562 * 22 21 2 25 25 N 1.31619 * 119.99909 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99755 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47070 * 90.00082 * 26 24 22 28 28 H 1.48507 * 109.46993 * 210.00089 * 26 24 22 29 29 H 1.48499 * 109.47171 * 329.99839 * 26 24 22 30 30 H 1.09005 * 109.47342 * 299.99737 * 1 2 3 31 31 H 1.08999 * 109.47373 * 59.99930 * 1 2 3 32 32 H 1.08998 * 109.46931 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47384 * 54.99596 * 4 2 1 34 34 H 1.09001 * 109.47078 * 295.00052 * 4 2 1 35 35 H 1.09004 * 109.47237 * 299.99910 * 7 5 4 36 36 H 1.08999 * 109.47176 * 59.99865 * 7 5 4 37 37 H 1.09001 * 109.47088 * 180.02562 * 7 5 4 38 38 H 0.96999 * 120.00702 * 24.99444 * 8 5 4 39 39 H 1.09007 * 109.47324 * 59.99956 * 11 9 8 40 40 H 1.09001 * 109.47308 * 299.99976 * 11 9 8 41 41 H 1.08994 * 109.46599 * 59.99619 * 12 11 9 42 42 H 1.09001 * 109.46881 * 300.00277 * 12 11 9 43 43 H 1.08004 * 120.01774 * 0.03769 * 15 14 13 44 44 H 1.08000 * 119.95526 * 180.27319 * 16 15 14 45 45 H 1.08001 * 119.93128 * 179.97438 * 17 16 15 46 46 H 1.07998 * 119.98480 * 180.02562 * 18 17 16 47 47 H 0.97006 * 119.99425 * 95.00493 * 21 2 1 48 48 H 0.96999 * 119.99656 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6131 -1.3137 6 1 3.8570 0.4359 -1.2678 7 6 4.0644 -1.2248 -2.6241 8 7 4.1537 -1.3340 -0.1826 9 6 5.3748 -0.9909 0.2732 10 8 5.9862 -0.0855 -0.2536 11 6 5.9803 -1.7321 1.4372 12 6 7.3600 -1.1497 1.7507 13 8 7.9345 -1.8529 2.8540 14 6 9.1692 -1.4571 3.2628 15 6 9.8142 -0.4144 2.6151 16 6 11.0694 -0.0140 3.0319 17 6 11.6832 -0.6514 4.0943 18 6 11.0437 -1.6915 4.7428 19 6 9.7871 -2.0966 4.3300 20 9 9.1616 -3.1126 4.9639 21 7 2.0184 -0.6905 1.1961 22 6 2.1492 -0.0075 2.3757 23 1 1.8919 1.0404 2.4244 24 6 2.6124 -0.6617 3.5090 25 7 2.9265 -1.9385 3.4495 26 14 2.7915 0.2703 5.1179 27 1 1.5242 0.1791 5.8865 28 1 3.8966 -0.3228 5.9132 29 1 3.0963 1.6955 4.8331 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6053 -0.2617 -2.1370 34 1 1.7516 -1.7714 -1.2056 35 1 3.7723 -2.2740 -2.6701 36 1 3.6262 -0.6885 -3.4658 37 1 5.1508 -1.1483 -2.6699 38 1 3.6648 -2.0583 0.2386 39 1 6.0810 -2.7874 1.1833 40 1 5.3350 -1.6283 2.3095 41 1 7.2597 -0.0944 2.0043 42 1 8.0051 -1.2539 0.8782 43 1 9.3357 0.0848 1.7855 44 1 11.5697 0.8010 2.5301 45 1 12.6644 -0.3366 4.4175 46 1 11.5251 -2.1874 5.5727 47 1 2.2491 -1.6317 1.1525 48 1 3.2505 -2.3956 4.2413 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136111780.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:00 Heat of formation + Delta-G solvation = -106.290755 kcal Electronic energy + Delta-G solvation = -29995.912020 eV Core-core repulsion = 25772.191822 eV Total energy + Delta-G solvation = -4223.720198 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.86215 -41.23958 -40.65624 -38.62606 -38.22039 -35.80878 -34.09515 -33.27729 -31.86516 -31.68955 -30.52585 -30.09517 -27.59324 -25.97311 -25.57623 -23.62060 -23.29618 -22.12282 -21.68653 -20.93703 -19.63836 -19.11506 -18.27167 -17.68426 -17.59902 -17.49927 -17.10667 -16.65244 -16.57784 -15.90312 -15.81772 -15.56566 -15.41718 -15.40039 -14.96489 -14.68323 -14.34194 -14.22077 -13.86906 -13.78842 -13.56139 -13.31955 -13.22063 -12.97978 -12.90096 -12.82779 -12.77762 -12.62166 -12.52174 -12.29108 -12.17120 -12.05416 -11.84927 -11.70848 -11.60787 -11.40070 -10.88779 -10.80602 -9.98255 -9.83970 -9.26983 -8.83746 -7.88102 -5.09676 0.09117 0.23194 1.41665 1.46249 1.50009 1.69809 1.83785 2.56854 2.57498 2.65765 3.21429 3.46286 3.63433 3.76538 3.81298 3.88646 3.96095 4.00406 4.11817 4.17924 4.20446 4.29460 4.34562 4.40171 4.51665 4.57929 4.69129 4.72337 4.84738 4.88508 4.92456 4.95315 4.99768 5.07064 5.09604 5.14671 5.16615 5.23167 5.38553 5.38954 5.42843 5.59421 5.63818 5.69348 5.78496 6.22991 6.34564 6.69050 7.36688 7.44279 8.17862 8.44091 9.32629 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011182 B = 0.003477 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.458235 B = 8051.988741 C = 9753.713794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.161 3.839 3 H 0.030 0.970 4 C -0.120 4.120 5 C 0.146 3.854 6 H 0.058 0.942 7 C -0.151 4.151 8 N -0.689 5.689 9 C 0.534 3.466 10 O -0.592 6.592 11 C -0.139 4.139 12 C 0.091 3.909 13 O -0.331 6.331 14 C 0.072 3.928 15 C -0.193 4.193 16 C -0.083 4.083 17 C -0.122 4.122 18 C -0.113 4.113 19 C 0.029 3.971 20 F -0.152 7.152 21 N -0.720 5.720 22 C -0.224 4.224 23 H 0.058 0.942 24 C -0.050 4.050 25 N -0.943 5.943 26 Si 0.935 3.065 27 H -0.292 1.292 28 H -0.303 1.303 29 H -0.284 1.284 30 H 0.028 0.972 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.109 0.891 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.041 0.959 38 H 0.406 0.594 39 H 0.110 0.890 40 H 0.099 0.901 41 H 0.058 0.942 42 H 0.081 0.919 43 H 0.141 0.859 44 H 0.165 0.835 45 H 0.174 0.826 46 H 0.165 0.835 47 H 0.375 0.625 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.673 0.435 -8.023 15.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.053 3.947 3 H 0.049 0.951 4 C -0.158 4.158 5 C 0.041 3.959 6 H 0.077 0.923 7 C -0.210 4.210 8 N -0.339 5.339 9 C 0.321 3.679 10 O -0.475 6.475 11 C -0.179 4.179 12 C 0.016 3.984 13 O -0.245 6.245 14 C 0.026 3.974 15 C -0.211 4.211 16 C -0.100 4.100 17 C -0.140 4.140 18 C -0.132 4.132 19 C 0.009 3.991 20 F -0.131 7.131 21 N -0.363 5.363 22 C -0.356 4.356 23 H 0.076 0.924 24 C -0.244 4.244 25 N -0.594 5.594 26 Si 0.768 3.232 27 H -0.219 1.219 28 H -0.230 1.230 29 H -0.210 1.210 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.127 0.873 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.060 0.940 38 H 0.243 0.757 39 H 0.128 0.872 40 H 0.117 0.883 41 H 0.076 0.924 42 H 0.099 0.901 43 H 0.159 0.841 44 H 0.183 0.817 45 H 0.192 0.808 46 H 0.183 0.817 47 H 0.210 0.790 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 12.897 1.013 -8.204 15.319 hybrid contribution -0.643 -0.269 1.719 1.855 sum 12.253 0.744 -6.485 13.883 Atomic orbital electron populations 1.22282 0.97759 1.00981 1.00419 1.20507 0.92680 0.94977 0.86545 0.95147 1.22128 0.92955 1.02100 0.98653 1.20963 0.93314 0.96011 0.85564 0.92343 1.22105 1.00720 1.01834 0.96305 1.45983 1.16975 1.37259 1.33711 1.20068 0.81937 0.82799 0.83096 1.90592 1.63074 1.32597 1.61244 1.21404 0.95719 1.01813 0.98932 1.22356 0.93629 0.95228 0.87223 1.86059 1.29364 1.58795 1.50316 1.19475 0.85931 0.96478 0.95542 1.21484 0.98396 0.98168 1.03089 1.21486 0.92934 0.99452 0.96168 1.21409 1.01825 0.95086 0.95687 1.21386 0.91339 0.98796 1.01653 1.17589 0.94578 0.91488 0.95434 1.91449 1.82846 1.57779 1.81038 1.42529 1.78113 1.10015 1.05631 1.19308 1.34273 0.93495 0.88559 0.92427 1.24955 1.03621 0.96600 0.99210 1.69637 1.52405 1.08753 1.28613 0.85717 0.76601 0.78167 0.82739 1.21917 1.23028 1.20966 0.95299 0.91191 0.93412 0.87283 0.90594 0.91410 0.89586 0.94028 0.75687 0.87169 0.88306 0.92403 0.90136 0.84103 0.81718 0.80834 0.81735 0.79020 0.94355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.90 9.49 71.98 0.68 -4.22 16 2 C 0.16 5.66 2.89 44.99 0.13 5.79 16 3 H 0.03 1.18 8.08 -2.39 -0.02 1.16 16 4 C -0.12 -3.17 4.43 30.59 0.14 -3.03 16 5 C 0.15 4.32 2.57 45.00 0.12 4.44 16 6 H 0.06 2.04 7.58 -2.39 -0.02 2.02 16 7 C -0.15 -3.55 9.48 71.98 0.68 -2.87 16 8 N -0.69 -23.78 3.80 -442.55 -1.68 -25.46 16 9 C 0.53 20.55 7.79 87.66 0.68 21.23 16 10 O -0.59 -24.95 15.65 -3.04 -0.05 -25.00 16 11 C -0.14 -5.22 6.07 29.85 0.18 -5.04 16 12 C 0.09 3.20 4.03 71.98 0.29 3.49 16 13 O -0.33 -12.51 10.00 -93.06 -0.93 -13.44 16 14 C 0.07 2.33 6.69 22.53 0.15 2.48 16 15 C -0.19 -4.98 9.04 22.36 0.20 -4.78 16 16 C -0.08 -1.51 10.04 22.26 0.22 -1.28 16 17 C -0.12 -1.96 10.04 22.28 0.22 -1.74 16 18 C -0.11 -2.38 10.02 22.29 0.22 -2.16 16 19 C 0.03 0.88 7.31 22.45 0.16 1.04 16 20 F -0.15 -5.36 17.11 44.97 0.77 -4.59 16 21 N -0.72 -31.72 3.84 -322.96 -1.24 -32.96 16 22 C -0.22 -11.64 9.93 84.03 0.83 -10.81 16 23 H 0.06 3.07 7.83 -2.91 -0.02 3.04 16 24 C -0.05 -2.70 5.50 84.86 0.47 -2.24 16 25 N -0.94 -51.95 12.77 21.65 0.28 -51.67 16 26 Si 0.94 46.27 29.55 68.60 2.03 48.30 16 27 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 28 H -0.30 -15.54 7.11 99.48 0.71 -14.84 16 29 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 30 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.41 14.31 6.51 -92.71 -0.60 13.71 16 39 H 0.11 3.68 8.14 -2.38 -0.02 3.66 16 40 H 0.10 4.47 7.86 -2.39 -0.02 4.46 16 41 H 0.06 2.14 7.62 -2.39 -0.02 2.12 16 42 H 0.08 2.54 7.62 -2.39 -0.02 2.52 16 43 H 0.14 3.53 6.30 -2.91 -0.02 3.51 16 44 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 45 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 46 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 47 H 0.38 16.92 5.70 -92.70 -0.53 16.39 16 48 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -66.88 400.24 4.40 -62.48 By element: Atomic # 1 Polarization: 42.20 SS G_CDS: -0.16 Total: 42.04 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 5.39 Total: 0.32 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -2.65 Total: -110.09 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: -0.98 Total: -38.45 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 0.77 Total: -4.59 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -66.88 4.40 -62.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136111780.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.811 kcal (2) G-P(sol) polarization free energy of solvation -66.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds