Wall clock time and date at job start Tue Mar 31 2020 21:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35995 * 116.99762 * 2 1 4 4 C 1.38625 * 120.06099 * 359.72681 * 3 2 1 5 5 C 1.38223 * 120.03675 * 179.74766 * 4 3 2 6 6 C 1.50700 * 119.91886 * 180.25423 * 5 4 3 7 7 N 1.46899 * 109.46768 * 270.24651 * 6 5 4 8 8 C 1.46953 * 111.00507 * 293.80280 * 7 6 5 9 9 C 1.53044 * 109.36623 * 176.81144 * 8 7 6 10 10 N 1.46958 * 109.36820 * 58.40458 * 9 8 7 11 11 C 1.46898 * 111.00197 * 176.81450 * 10 9 8 12 12 C 1.50697 * 109.46637 * 293.78945 * 11 10 9 13 13 H 1.07998 * 120.00396 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99869 * 180.02562 * 12 11 10 15 15 N 1.31521 * 119.99860 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00261 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46921 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47547 * 119.99928 * 16 14 12 19 19 H 1.48505 * 109.46958 * 240.00233 * 16 14 12 20 20 C 1.46964 * 110.87289 * 300.67755 * 10 9 8 21 21 C 1.46957 * 110.99795 * 169.99955 * 7 6 5 22 22 C 1.38269 * 120.15710 * 0.50189 * 5 4 3 23 23 C 1.38415 * 120.12003 * 359.77225 * 22 5 4 24 24 F 1.35096 * 120.01367 * 180.02562 * 23 22 5 25 25 C 1.38749 * 119.96186 * 359.97438 * 23 22 5 26 26 O 1.36051 * 120.08221 * 180.02562 * 25 23 22 27 27 C 1.42900 * 116.99904 * 269.98344 * 26 25 23 28 28 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47187 * 300.00191 * 1 2 3 30 30 H 1.09001 * 109.46558 * 60.00239 * 1 2 3 31 31 H 1.07998 * 119.98024 * 359.97115 * 4 3 2 32 32 H 1.08998 * 109.47261 * 30.24379 * 6 5 4 33 33 H 1.08996 * 109.47089 * 150.25260 * 6 5 4 34 34 H 1.09000 * 109.48588 * 296.78396 * 8 7 6 35 35 H 1.09001 * 109.48845 * 56.84218 * 8 7 6 36 36 H 1.08994 * 109.49328 * 298.42981 * 9 8 7 37 37 H 1.09007 * 109.48888 * 178.36960 * 9 8 7 38 38 H 1.08993 * 109.47274 * 53.79232 * 11 10 9 39 39 H 1.09001 * 109.46839 * 173.79757 * 11 10 9 40 40 H 0.97003 * 119.99684 * 179.97438 * 15 14 12 41 41 H 1.08996 * 109.49275 * 299.35004 * 20 10 9 42 42 H 1.09001 * 109.48642 * 179.28764 * 20 10 9 43 43 H 1.08994 * 109.49086 * 303.15754 * 21 7 6 44 44 H 1.09001 * 109.48755 * 63.22824 * 21 7 6 45 45 H 1.07994 * 119.93635 * 179.74937 * 22 5 4 46 46 H 1.09000 * 109.47520 * 60.00066 * 27 26 25 47 47 H 1.09009 * 109.47037 * 179.97438 * 27 26 25 48 48 H 1.09000 * 109.47156 * 299.99205 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2926 2.3751 -0.0057 5 6 1.9206 3.6065 -0.0004 6 6 1.0985 4.8695 -0.0009 7 7 0.8319 5.2797 -1.3860 8 6 2.0732 5.6739 -2.0668 9 6 1.7647 6.0170 -3.5260 10 7 0.7745 7.1019 -3.5728 11 6 0.5079 7.5120 -4.9580 12 6 1.7474 8.1372 -5.5441 13 1 2.6437 8.2211 -4.9475 14 6 1.7373 8.6021 -6.8421 15 7 0.6459 8.4994 -7.5688 16 14 3.2739 9.3764 -7.5690 17 1 4.3579 9.3721 -6.5539 18 1 3.7054 8.5984 -8.7579 19 1 2.9800 10.7750 -7.9726 20 6 -0.4668 6.7075 -2.8921 21 6 -0.1584 6.3644 -1.4327 22 6 3.3012 3.6821 0.0001 23 6 4.0602 2.5247 0.0001 24 9 5.4090 2.6011 0.0011 25 6 3.4350 1.2860 0.0001 26 8 4.1787 0.1468 0.0006 27 6 4.5335 -0.3969 -1.2724 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 0.2141 2.3193 -0.0107 32 1 0.1542 4.6885 0.5125 33 1 1.6460 5.6595 0.5130 34 1 2.4989 6.5459 -1.5703 35 1 2.7858 4.8500 -2.0297 36 1 1.3644 5.1372 -4.0297 37 1 2.6792 6.3376 -4.0253 38 1 0.2274 6.6393 -5.5477 39 1 -0.3060 8.2369 -4.9720 40 1 0.6386 8.8269 -8.4819 41 1 -0.8926 5.8355 -3.3885 42 1 -1.1794 7.5315 -2.9292 43 1 -1.0727 6.0438 -0.9335 44 1 0.2420 7.2443 -0.9291 45 1 3.7881 4.6461 0.0001 46 1 5.1188 0.3346 -1.8297 47 1 5.1247 -1.3016 -1.1292 48 1 3.6283 -0.6385 -1.8294 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137506116.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:57 Heat of formation + Delta-G solvation = -74.014164 kcal Electronic energy + Delta-G solvation = -29885.791804 eV Core-core repulsion = 25663.471224 eV Total energy + Delta-G solvation = -4222.320580 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.08663 -40.76667 -39.02610 -38.30922 -37.34747 -34.98065 -32.59512 -31.15634 -30.56435 -30.13090 -28.50975 -27.73295 -27.07818 -25.63587 -23.85485 -23.19740 -22.60707 -21.69145 -21.25816 -19.22485 -18.54839 -17.63282 -17.60397 -16.58834 -16.37499 -16.29364 -15.89908 -15.67490 -15.18859 -14.99556 -14.93712 -14.74515 -14.62524 -14.55482 -14.21880 -13.82939 -13.46043 -13.38933 -13.13835 -12.60900 -12.48607 -12.28722 -12.12020 -12.05382 -11.87268 -11.76385 -11.36604 -11.26299 -11.10735 -10.86728 -10.77388 -10.64959 -10.40474 -10.30241 -10.25174 -9.75508 -9.18657 -8.86701 -8.54001 -8.45052 -8.21304 -7.25605 -6.04234 -4.05586 0.70208 0.94052 2.76798 2.98369 3.29920 3.37439 3.42138 3.54723 4.00516 4.18496 4.37530 4.41267 4.64243 4.71463 4.80100 4.86458 4.92104 4.98339 5.11870 5.13584 5.17359 5.19479 5.26384 5.31458 5.33269 5.42165 5.50998 5.52116 5.62279 5.71897 5.78366 5.79471 5.86790 6.03007 6.12380 6.20553 6.30331 6.38848 6.55625 6.66709 6.76286 7.10816 7.11660 7.28798 7.31781 7.34859 7.78678 8.07038 8.18431 8.53302 9.02258 9.58860 11.06681 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013129 B = 0.002717 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.133297 B =10303.185741 C =11190.780022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.304 6.304 3 C 0.139 3.861 4 C -0.186 4.186 5 C -0.006 4.006 6 C 0.090 3.910 7 N -0.534 5.534 8 C 0.053 3.947 9 C 0.069 3.931 10 N -0.539 5.539 11 C 0.194 3.806 12 C -0.507 4.507 13 H 0.063 0.937 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.057 3.943 21 C 0.062 3.938 22 C -0.172 4.172 23 C 0.123 3.877 24 F -0.126 7.126 25 C 0.022 3.978 26 O -0.318 6.318 27 C 0.033 3.967 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.141 0.859 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.028 0.972 37 H 0.086 0.914 38 H -0.009 1.009 39 H 0.030 0.970 40 H 0.261 0.739 41 H 0.030 0.970 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.041 0.959 45 H 0.142 0.858 46 H 0.046 0.954 47 H 0.095 0.905 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.103 -16.073 18.017 24.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.216 6.216 3 C 0.092 3.908 4 C -0.205 4.205 5 C -0.007 4.007 6 C -0.037 4.037 7 N -0.259 5.259 8 C -0.075 4.075 9 C -0.060 4.060 10 N -0.264 5.264 11 C 0.069 3.931 12 C -0.545 4.545 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.725 3.275 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.072 4.072 21 C -0.066 4.066 22 C -0.192 4.192 23 C 0.103 3.897 24 F -0.105 7.105 25 C -0.024 4.024 26 O -0.234 6.234 27 C -0.062 4.062 28 H 0.120 0.880 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.159 0.841 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.046 0.954 37 H 0.105 0.895 38 H 0.009 0.991 39 H 0.048 0.952 40 H 0.070 0.930 41 H 0.048 0.952 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.059 0.941 45 H 0.160 0.840 46 H 0.065 0.935 47 H 0.113 0.887 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.218 -16.313 17.974 24.274 hybrid contribution 0.700 0.633 -0.853 1.272 sum 0.918 -15.680 17.121 23.235 Atomic orbital electron populations 1.23169 0.77849 1.04262 1.01870 1.86150 1.21659 1.25699 1.88125 1.19016 0.90629 0.85228 0.95911 1.21076 1.00659 0.90685 1.08077 1.19406 0.92320 0.94777 0.94161 1.21059 0.98801 0.92836 0.91031 1.62208 1.11718 1.38833 1.13106 1.22369 0.90663 0.98674 0.95770 1.21973 0.97987 0.92699 0.93360 1.62296 1.08331 1.35278 1.20487 1.19699 0.97508 0.94809 0.81119 1.21190 0.97894 1.38491 0.96958 0.91875 1.24993 0.96359 0.96201 0.97079 1.69972 1.27237 1.47290 1.09308 0.86458 0.83141 0.78926 0.79002 1.19651 1.21096 1.21015 1.22061 0.93612 0.98794 0.92782 1.22181 0.94667 0.91847 0.97912 1.20955 0.93711 0.97561 1.06940 1.17585 0.77352 0.92830 1.01975 1.91515 1.28375 1.96999 1.93574 1.17748 0.87290 0.85827 1.11545 1.86136 1.70034 1.37846 1.29423 1.23057 0.99945 0.98680 0.84491 0.87970 0.92318 0.92063 0.84114 0.89582 0.93271 0.94151 0.90884 0.95391 0.89548 0.99090 0.95227 0.92982 0.95154 0.90924 0.91076 0.94061 0.84045 0.93511 0.88678 0.93228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.30 -3.27 10.28 -34.27 -0.35 -3.63 16 3 C 0.14 1.61 6.70 -39.13 -0.26 1.35 16 4 C -0.19 -1.93 8.69 -39.44 -0.34 -2.27 16 5 C -0.01 -0.06 4.89 -104.62 -0.51 -0.57 16 6 C 0.09 0.95 5.11 -4.98 -0.03 0.93 16 7 N -0.53 -7.28 4.70 -235.92 -1.11 -8.39 16 8 C 0.05 0.82 5.25 -3.77 -0.02 0.80 16 9 C 0.07 1.33 5.43 -3.77 -0.02 1.31 16 10 N -0.54 -11.50 4.70 -235.91 -1.11 -12.61 16 11 C 0.19 5.02 4.72 -4.98 -0.02 5.00 16 12 C -0.51 -14.14 8.47 -34.44 -0.29 -14.44 16 13 H 0.06 1.75 7.13 -52.49 -0.37 1.37 16 14 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 15 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 16 Si 0.90 21.58 29.54 -169.99 -5.02 16.55 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 C 0.06 1.00 5.61 -3.76 -0.02 0.97 16 21 C 0.06 0.86 5.61 -3.76 -0.02 0.84 16 22 C -0.17 -1.97 7.89 -39.50 -0.31 -2.28 16 23 C 0.12 1.55 7.31 -39.33 -0.29 1.26 16 24 F -0.13 -1.68 17.11 2.25 0.04 -1.64 16 25 C 0.02 0.28 5.74 -39.09 -0.22 0.05 16 26 O -0.32 -4.15 10.07 -34.45 -0.35 -4.50 16 27 C 0.03 0.32 11.13 101.05 1.13 1.45 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.32 7.67 -51.93 -0.40 -0.08 16 30 H 0.06 0.39 7.65 -51.93 -0.40 -0.01 16 31 H 0.14 1.19 6.30 -52.49 -0.33 0.86 16 32 H 0.09 0.75 7.97 -51.93 -0.41 0.34 16 33 H 0.05 0.50 8.06 -51.93 -0.42 0.08 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 1.05 5.95 -51.93 -0.31 0.74 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 1.81 6.79 -51.92 -0.35 1.46 16 38 H -0.01 -0.24 8.12 -51.93 -0.42 -0.67 16 39 H 0.03 0.82 8.03 -51.93 -0.42 0.40 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 43 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 44 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.14 1.48 7.99 -52.49 -0.42 1.06 16 46 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 48 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 390.06 15.07 5.88 5.88 Total: -1.00 -31.95 390.06 -9.24 -41.18 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -7.61 Total: -3.96 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -0.34 Total: -3.00 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -1.48 Total: -46.89 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.70 Total: -8.12 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.95 -9.24 -41.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137506116.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.830 kcal (2) G-P(sol) polarization free energy of solvation -31.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds