Wall clock time and date at job start Tue Mar 31 2020 21:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35995 * 116.99762 * 2 1 4 4 C 1.38625 * 120.06099 * 359.72681 * 3 2 1 5 5 C 1.38223 * 120.03675 * 179.74766 * 4 3 2 6 6 C 1.50700 * 119.91886 * 180.25423 * 5 4 3 7 7 N 1.46899 * 109.46768 * 270.24651 * 6 5 4 8 8 C 1.46953 * 111.00507 * 293.80280 * 7 6 5 9 9 C 1.53044 * 109.36623 * 176.81144 * 8 7 6 10 10 N 1.46958 * 109.36820 * 58.40458 * 9 8 7 11 11 C 1.46898 * 111.00197 * 176.81450 * 10 9 8 12 12 C 1.50697 * 109.46637 * 293.78945 * 11 10 9 13 13 H 1.07998 * 120.00396 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99869 * 180.02562 * 12 11 10 15 15 N 1.31521 * 119.99860 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00261 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46921 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47547 * 119.99928 * 16 14 12 19 19 H 1.48505 * 109.46958 * 240.00233 * 16 14 12 20 20 C 1.46964 * 110.87289 * 300.67755 * 10 9 8 21 21 C 1.46957 * 110.99795 * 169.99955 * 7 6 5 22 22 C 1.38269 * 120.15710 * 0.50189 * 5 4 3 23 23 C 1.38415 * 120.12003 * 359.77225 * 22 5 4 24 24 F 1.35096 * 120.01367 * 180.02562 * 23 22 5 25 25 C 1.38749 * 119.96186 * 359.97438 * 23 22 5 26 26 O 1.36051 * 120.08221 * 180.02562 * 25 23 22 27 27 C 1.42900 * 116.99904 * 269.98344 * 26 25 23 28 28 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47187 * 300.00191 * 1 2 3 30 30 H 1.09001 * 109.46558 * 60.00239 * 1 2 3 31 31 H 1.07998 * 119.98024 * 359.97115 * 4 3 2 32 32 H 1.08998 * 109.47261 * 30.24379 * 6 5 4 33 33 H 1.08996 * 109.47089 * 150.25260 * 6 5 4 34 34 H 1.09000 * 109.48588 * 296.78396 * 8 7 6 35 35 H 1.09001 * 109.48845 * 56.84218 * 8 7 6 36 36 H 1.08994 * 109.49328 * 298.42981 * 9 8 7 37 37 H 1.09007 * 109.48888 * 178.36960 * 9 8 7 38 38 H 1.08993 * 109.47274 * 53.79232 * 11 10 9 39 39 H 1.09001 * 109.46839 * 173.79757 * 11 10 9 40 40 H 0.97003 * 119.99684 * 179.97438 * 15 14 12 41 41 H 1.08996 * 109.49275 * 299.35004 * 20 10 9 42 42 H 1.09001 * 109.48642 * 179.28764 * 20 10 9 43 43 H 1.08994 * 109.49086 * 303.15754 * 21 7 6 44 44 H 1.09001 * 109.48755 * 63.22824 * 21 7 6 45 45 H 1.07994 * 119.93635 * 179.74937 * 22 5 4 46 46 H 1.09000 * 109.47520 * 60.00066 * 27 26 25 47 47 H 1.09009 * 109.47037 * 179.97438 * 27 26 25 48 48 H 1.09000 * 109.47156 * 299.99205 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2926 2.3751 -0.0057 5 6 1.9206 3.6065 -0.0004 6 6 1.0985 4.8695 -0.0009 7 7 0.8319 5.2797 -1.3860 8 6 2.0732 5.6739 -2.0668 9 6 1.7647 6.0170 -3.5260 10 7 0.7745 7.1019 -3.5728 11 6 0.5079 7.5120 -4.9580 12 6 1.7474 8.1372 -5.5441 13 1 2.6437 8.2211 -4.9475 14 6 1.7373 8.6021 -6.8421 15 7 0.6459 8.4994 -7.5688 16 14 3.2739 9.3764 -7.5690 17 1 4.3579 9.3721 -6.5539 18 1 3.7054 8.5984 -8.7579 19 1 2.9800 10.7750 -7.9726 20 6 -0.4668 6.7075 -2.8921 21 6 -0.1584 6.3644 -1.4327 22 6 3.3012 3.6821 0.0001 23 6 4.0602 2.5247 0.0001 24 9 5.4090 2.6011 0.0011 25 6 3.4350 1.2860 0.0001 26 8 4.1787 0.1468 0.0006 27 6 4.5335 -0.3969 -1.2724 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 0.2141 2.3193 -0.0107 32 1 0.1542 4.6885 0.5125 33 1 1.6460 5.6595 0.5130 34 1 2.4989 6.5459 -1.5703 35 1 2.7858 4.8500 -2.0297 36 1 1.3644 5.1372 -4.0297 37 1 2.6792 6.3376 -4.0253 38 1 0.2274 6.6393 -5.5477 39 1 -0.3060 8.2369 -4.9720 40 1 0.6386 8.8269 -8.4819 41 1 -0.8926 5.8355 -3.3885 42 1 -1.1794 7.5315 -2.9292 43 1 -1.0727 6.0438 -0.9335 44 1 0.2420 7.2443 -0.9291 45 1 3.7881 4.6461 0.0001 46 1 5.1188 0.3346 -1.8297 47 1 5.1247 -1.3016 -1.1292 48 1 3.6283 -0.6385 -1.8294 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137506116.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:56 Heat of formation + Delta-G solvation = -95.750539 kcal Electronic energy + Delta-G solvation = -29886.734364 eV Core-core repulsion = 25663.471224 eV Total energy + Delta-G solvation = -4223.263140 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.04736 -41.59395 -40.23821 -39.13236 -38.39356 -36.39816 -34.57700 -32.25821 -31.81658 -31.02659 -29.91865 -28.37804 -28.26677 -26.97388 -25.22172 -24.46840 -23.47472 -23.28068 -22.37372 -20.61892 -19.39985 -18.53064 -18.47763 -18.41749 -17.48860 -17.21561 -17.17161 -16.44483 -16.43642 -16.07273 -15.96613 -15.85947 -15.75571 -15.69222 -15.52910 -15.25017 -14.96962 -14.61966 -14.09082 -14.01995 -13.53544 -13.30324 -13.25568 -13.16355 -12.97366 -12.78720 -12.72243 -12.70018 -12.35604 -12.29097 -12.16932 -12.07638 -11.98340 -11.76112 -11.46802 -11.16385 -11.12321 -10.63279 -9.75292 -9.41987 -9.24761 -9.01960 -8.21909 -6.31953 -0.16908 0.09110 1.39993 1.40454 1.54039 2.06192 2.13337 2.39196 2.69272 3.04198 3.10511 3.25707 3.31251 3.54082 3.83166 3.93519 4.00771 4.16475 4.20399 4.23358 4.35537 4.36878 4.38446 4.38956 4.41673 4.43971 4.52300 4.61993 4.69255 4.69910 4.72993 4.76698 4.82768 4.89397 4.96340 4.98875 5.04759 5.06257 5.22379 5.28392 5.35280 5.47613 5.63348 5.98787 6.01991 6.05284 6.07707 6.34012 6.45749 6.63555 6.84357 7.37948 8.89478 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013129 B = 0.002717 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.133297 B =10303.185741 C =11190.780022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.321 6.321 3 C 0.133 3.867 4 C -0.177 4.177 5 C -0.009 4.009 6 C 0.095 3.905 7 N -0.541 5.541 8 C 0.068 3.932 9 C 0.071 3.929 10 N -0.544 5.544 11 C 0.209 3.791 12 C -0.522 4.522 13 H 0.062 0.938 14 C 0.001 3.999 15 N -0.934 5.934 16 Si 0.968 3.032 17 H -0.263 1.263 18 H -0.279 1.279 19 H -0.277 1.277 20 C 0.052 3.948 21 C 0.072 3.928 22 C -0.173 4.173 23 C 0.104 3.896 24 F -0.137 7.137 25 C 0.004 3.996 26 O -0.337 6.337 27 C 0.030 3.970 28 H 0.121 0.879 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.165 0.835 32 H 0.115 0.885 33 H 0.060 0.940 34 H 0.042 0.958 35 H 0.084 0.916 36 H 0.012 0.988 37 H 0.063 0.937 38 H -0.042 1.042 39 H 0.005 0.995 40 H 0.264 0.736 41 H 0.021 0.979 42 H 0.073 0.927 43 H 0.108 0.892 44 H 0.044 0.956 45 H 0.149 0.851 46 H 0.043 0.957 47 H 0.117 0.883 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.146 -16.294 19.713 25.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.234 6.234 3 C 0.086 3.914 4 C -0.196 4.196 5 C -0.010 4.010 6 C -0.032 4.032 7 N -0.266 5.266 8 C -0.060 4.060 9 C -0.058 4.058 10 N -0.269 5.269 11 C 0.083 3.917 12 C -0.561 4.561 13 H 0.080 0.920 14 C -0.197 4.197 15 N -0.575 5.575 16 Si 0.793 3.207 17 H -0.187 1.187 18 H -0.205 1.205 19 H -0.203 1.203 20 C -0.076 4.076 21 C -0.055 4.055 22 C -0.192 4.192 23 C 0.084 3.916 24 F -0.115 7.115 25 C -0.042 4.042 26 O -0.254 6.254 27 C -0.064 4.064 28 H 0.139 0.861 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.182 0.818 32 H 0.133 0.867 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.030 0.970 37 H 0.082 0.918 38 H -0.024 1.024 39 H 0.023 0.977 40 H 0.073 0.927 41 H 0.039 0.961 42 H 0.091 0.909 43 H 0.126 0.874 44 H 0.062 0.938 45 H 0.167 0.833 46 H 0.062 0.938 47 H 0.135 0.865 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.039 -16.548 19.700 25.728 hybrid contribution 0.691 0.604 -1.369 1.648 sum 0.652 -15.944 18.332 24.304 Atomic orbital electron populations 1.23469 0.75754 1.05943 1.02779 1.86135 1.23844 1.25472 1.87966 1.19097 0.90366 0.86064 0.95854 1.21321 1.01738 0.89967 1.06568 1.19505 0.92036 0.95268 0.94215 1.21143 1.00402 0.92613 0.89050 1.62146 1.10610 1.38499 1.15312 1.22137 0.91881 0.99127 0.92887 1.21932 0.96291 0.91227 0.96343 1.62229 1.10517 1.36657 1.17520 1.19338 0.96062 0.92762 0.83561 1.21482 0.98410 1.38674 0.97490 0.91984 1.25913 0.99667 0.96590 0.97488 1.70095 1.29449 1.48182 1.09777 0.85348 0.79133 0.78014 0.78215 1.18725 1.20457 1.20286 1.22200 0.91945 0.98403 0.95082 1.22119 0.96350 0.92264 0.94816 1.21087 0.94140 0.97428 1.06564 1.17782 0.77100 0.93427 1.03285 1.91479 1.29139 1.97072 1.93833 1.18029 0.88133 0.85842 1.12160 1.86087 1.70318 1.38120 1.30910 1.23209 1.00244 0.99349 0.83628 0.86114 0.90752 0.91653 0.81788 0.86663 0.92178 0.93992 0.89800 0.97005 0.91824 1.02420 0.97666 0.92674 0.96110 0.90909 0.87356 0.93816 0.83305 0.93830 0.86462 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.32 -6.44 10.28 -79.58 -0.82 -7.25 16 3 C 0.13 2.91 6.70 22.56 0.15 3.06 16 4 C -0.18 -3.20 8.69 22.36 0.19 -3.00 16 5 C -0.01 -0.18 4.89 -19.86 -0.10 -0.28 16 6 C 0.09 1.62 5.11 85.56 0.44 2.05 16 7 N -0.54 -13.16 4.70 -900.31 -4.23 -17.39 16 8 C 0.07 1.99 5.25 86.31 0.45 2.44 16 9 C 0.07 2.79 5.43 86.31 0.47 3.26 16 10 N -0.54 -23.58 4.70 -900.28 -4.23 -27.82 16 11 C 0.21 11.30 4.72 85.56 0.40 11.71 16 12 C -0.52 -29.87 8.47 25.60 0.22 -29.65 16 13 H 0.06 3.49 7.13 -2.91 -0.02 3.47 16 14 C 0.00 0.08 5.46 84.65 0.46 0.54 16 15 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16 16 Si 0.97 44.53 29.54 68.60 2.03 46.56 16 17 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 C 0.05 1.80 5.61 86.31 0.48 2.29 16 21 C 0.07 1.78 5.61 86.31 0.48 2.26 16 22 C -0.17 -3.69 7.89 22.32 0.18 -3.52 16 23 C 0.10 2.59 7.31 22.43 0.16 2.75 16 24 F -0.14 -3.68 17.11 44.97 0.77 -2.91 16 25 C 0.00 0.10 5.74 22.59 0.13 0.23 16 26 O -0.34 -8.79 10.07 -80.22 -0.81 -9.60 16 27 C 0.03 0.58 11.13 113.37 1.26 1.84 16 28 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 0.57 7.67 -2.39 -0.02 0.55 16 30 H 0.06 0.66 7.65 -2.39 -0.02 0.64 16 31 H 0.16 2.12 6.30 -2.91 -0.02 2.10 16 32 H 0.12 1.38 7.97 -2.39 -0.02 1.36 16 33 H 0.06 0.96 8.06 -2.39 -0.02 0.94 16 34 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.08 2.30 5.95 -2.39 -0.01 2.28 16 36 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.06 2.75 6.79 -2.38 -0.02 2.74 16 38 H -0.04 -2.49 8.12 -2.39 -0.02 -2.51 16 39 H 0.01 0.30 8.03 -2.39 -0.02 0.28 16 40 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 41 H 0.02 0.75 8.14 -2.39 -0.02 0.74 16 42 H 0.07 2.48 8.07 -2.39 -0.02 2.46 16 43 H 0.11 1.95 8.07 -2.39 -0.02 1.93 16 44 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.15 2.87 7.99 -2.91 -0.02 2.85 16 46 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.12 1.68 8.14 -2.38 -0.02 1.66 16 48 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -71.28 390.06 0.44 -70.83 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 0.95 Total: 6.64 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 6.50 Total: -2.74 kcal Atomic # 7 Polarization: -93.35 SS G_CDS: -8.18 Total: -101.53 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -1.63 Total: -16.86 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.77 Total: -2.91 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -71.28 0.44 -70.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137506116.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.916 kcal (2) G-P(sol) polarization free energy of solvation -71.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds