Wall clock time and date at job start Tue Mar 31 2020 21:51:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86800 * 120.00111 * 2 1
4 4 H 1.48497 * 109.47298 * 269.99777 * 3 2 1
5 5 H 1.48495 * 109.46837 * 30.00258 * 3 2 1
6 6 H 1.48501 * 109.47031 * 149.99790 * 3 2 1
7 7 C 1.37881 * 119.99905 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99801 * 180.02562 * 7 2 1
9 9 C 1.50701 * 119.99912 * 359.97438 * 7 2 1
10 10 N 1.46899 * 109.47026 * 180.02562 * 9 7 2
11 11 C 1.46957 * 111.00052 * 170.00298 * 10 9 7
12 12 C 1.53053 * 109.36477 * 183.18718 * 11 10 9
13 13 N 1.46959 * 109.36412 * 301.59523 * 12 11 10
14 14 C 1.46899 * 110.99877 * 183.18779 * 13 12 11
15 15 C 1.50697 * 109.46738 * 170.00223 * 14 13 12
16 16 C 1.38347 * 119.94440 * 90.00404 * 15 14 13
17 17 C 1.38293 * 120.24640 * 179.97438 * 16 15 14
18 18 C 1.38043 * 120.12220 * 0.02562 * 17 16 15
19 19 C 1.39315 * 119.87647 * 0.28723 * 18 17 16
20 20 C 1.48391 * 120.12004 * 179.69651 * 19 18 17
21 21 C 1.39707 * 120.91959 * 179.72130 * 20 19 18
22 22 N 1.32195 * 118.95568 * 179.73757 * 21 20 19
23 23 C 1.31825 * 120.94111 * 0.52169 * 22 21 20
24 24 N 1.31828 * 122.04477 * 359.74813 * 23 22 21
25 25 C 1.32198 * 120.93974 * 359.97438 * 24 23 22
26 26 C 1.38001 * 119.93780 * 269.97339 * 15 14 13
27 27 C 1.46957 * 110.87756 * 59.32224 * 13 12 11
28 28 C 1.46959 * 110.99877 * 293.79833 * 10 9 7
29 29 H 0.97001 * 119.99745 * 359.97438 * 1 2 3
30 30 H 1.08994 * 109.47294 * 60.00184 * 9 7 2
31 31 H 1.09002 * 109.47180 * 300.00192 * 9 7 2
32 32 H 1.08997 * 109.49176 * 63.21674 * 11 10 9
33 33 H 1.08997 * 109.48428 * 303.14907 * 11 10 9
34 34 H 1.09000 * 109.48870 * 181.62606 * 12 11 10
35 35 H 1.09003 * 109.48788 * 61.56303 * 12 11 10
36 36 H 1.08997 * 109.47247 * 50.00265 * 14 13 12
37 37 H 1.08997 * 109.46991 * 290.00160 * 14 13 12
38 38 H 1.08003 * 119.87175 * 359.97424 * 16 15 14
39 39 H 1.07999 * 119.93937 * 180.02562 * 17 16 15
40 40 H 1.08002 * 120.05911 * 180.02562 * 18 17 16
41 41 H 1.08004 * 120.51814 * 359.97438 * 21 20 19
42 42 H 1.07997 * 118.97901 * 179.72942 * 23 22 21
43 43 H 1.08005 * 120.52428 * 179.97438 * 25 24 23
44 44 H 1.07993 * 120.06355 * 0.02931 * 26 15 14
45 45 H 1.08997 * 109.49176 * 60.64781 * 27 13 12
46 46 H 1.08999 * 109.48876 * 180.71268 * 27 13 12
47 47 H 1.08996 * 109.49246 * 296.78137 * 28 10 9
48 48 H 1.08997 * 109.48914 * 56.82440 * 28 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4967 2.0464 -1.4000
5 1 1.4466 2.6526 0.7001
6 1 3.5467 1.4401 0.7001
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0001
9 6 1.2509 -2.4992 -0.0005
10 7 2.2055 -3.6157 -0.0005
11 6 1.5208 -4.8940 0.2376
12 6 2.5563 -6.0188 0.3092
13 7 3.3193 -6.0593 -0.9461
14 6 4.2739 -7.1759 -0.9461
15 6 4.8578 -7.3374 -2.3259
16 6 6.0104 -6.6550 -2.6722
17 6 6.5520 -6.7990 -3.9365
18 6 5.9442 -7.6250 -4.8605
19 6 4.7797 -8.3096 -4.5194
20 6 4.1182 -9.1937 -5.5107
21 6 2.9532 -9.8925 -5.1846
22 7 2.3932 -10.6653 -6.0993
23 6 2.9242 -10.7889 -7.2995
24 7 4.0250 -10.1518 -7.6463
25 6 4.6461 -9.3546 -6.7941
26 6 4.2423 -8.1663 -3.2416
27 6 4.0040 -4.7810 -1.1842
28 6 2.9685 -3.6563 -1.2559
29 1 -0.4850 0.8401 0.0004
30 1 0.6240 -2.5567 -0.8902
31 1 0.6246 -2.5571 0.8897
32 1 0.8252 -5.0915 -0.5780
33 1 0.9733 -4.8434 1.1788
34 1 2.0484 -6.9718 0.4570
35 1 3.2354 -5.8354 1.1419
36 1 3.7599 -8.0933 -0.6594
37 1 5.0737 -6.9701 -0.2348
38 1 6.4889 -6.0073 -1.9524
39 1 7.4521 -6.2642 -4.2014
40 1 6.3682 -7.7371 -5.8475
41 1 2.5149 -9.7997 -4.2018
42 1 2.4427 -11.4322 -8.0210
43 1 5.5478 -8.8362 -7.0852
44 1 3.3427 -8.6986 -2.9703
45 1 4.6996 -4.5836 -0.3687
46 1 4.5516 -4.8316 -2.1254
47 1 2.2895 -3.8396 -2.0885
48 1 3.4762 -2.7031 -1.4038
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001137768824.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:51:59
Heat of formation + Delta-G solvation = 68.430642 kcal
Electronic energy + Delta-G solvation = -28047.492709 eV
Core-core repulsion = 24294.410975 eV
Total energy + Delta-G solvation = -3753.081734 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 338.180 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-42.05795 -40.66002 -39.59901 -36.79972 -34.86762 -34.79207 -34.27895 -32.55458
-31.83577 -30.46451 -29.79562 -27.59192 -25.94865 -25.70606 -25.00261 -24.41302
-23.23871 -22.73074 -21.59653 -20.60947 -18.92615 -18.50000 -18.34127 -17.52267
-17.25817 -16.65583 -16.44773 -16.22622 -15.83939 -15.83467 -15.62372 -15.41298
-15.03675 -14.95073 -14.83908 -14.64413 -14.42059 -14.07278 -13.70673 -13.61120
-13.39484 -13.06441 -12.89241 -12.69469 -12.63679 -12.44899 -12.27598 -12.13829
-12.05088 -11.91035 -11.81097 -11.74335 -11.42613 -11.24971 -11.15420 -10.63303
-10.26554 -9.75747 -9.34565 -9.17528 -9.03045 -8.21807 -6.32405 -0.60412
0.03475 0.45233 0.77977 1.40216 1.41822 1.53424 2.39259 2.58257
2.90745 3.10338 3.17470 3.19891 3.22450 3.30262 3.42994 3.58204
3.66169 3.92742 4.01078 4.07551 4.21719 4.22976 4.29245 4.37286
4.38822 4.46350 4.49610 4.52972 4.64925 4.68167 4.74300 4.85744
4.87252 4.97462 5.00615 5.02979 5.06569 5.13371 5.21440 5.27156
5.34271 5.51546 5.54083 5.62425 5.66157 5.89484 6.00583 6.03048
6.08853 6.11535 6.33942 6.61727 6.83492 7.02949 7.37428 8.89524
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.014653 B = 0.002200 C = 0.002193
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1910.357175 B =12725.918808 C =12766.285462
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.935 5.935
2 C 0.000 4.000
3 Si 0.971 3.029
4 H -0.272 1.272
5 H -0.282 1.282
6 H -0.263 1.263
7 C -0.523 4.523
8 H 0.063 0.937
9 C 0.209 3.791
10 N -0.543 5.543
11 C 0.053 3.947
12 C 0.072 3.928
13 N -0.543 5.543
14 C 0.095 3.905
15 C -0.080 4.080
16 C -0.112 4.112
17 C -0.119 4.119
18 C -0.109 4.109
19 C -0.057 4.057
20 C -0.142 4.142
21 C 0.145 3.855
22 N -0.534 5.534
23 C 0.277 3.723
24 N -0.532 5.532
25 C 0.149 3.851
26 C -0.092 4.092
27 C 0.072 3.928
28 C 0.070 3.930
29 H 0.265 0.735
30 H -0.043 1.043
31 H 0.004 0.996
32 H 0.018 0.982
33 H 0.071 0.929
34 H 0.102 0.898
35 H 0.042 0.958
36 H 0.099 0.901
37 H 0.051 0.949
38 H 0.129 0.871
39 H 0.147 0.853
40 H 0.147 0.853
41 H 0.183 0.817
42 H 0.220 0.780
43 H 0.193 0.807
44 H 0.133 0.867
45 H 0.039 0.961
46 H 0.089 0.911
47 H 0.009 0.991
48 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.028 -22.043 -9.753 27.889
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.576 5.576
2 C -0.198 4.198
3 Si 0.795 3.205
4 H -0.198 1.198
5 H -0.207 1.207
6 H -0.187 1.187
7 C -0.561 4.561
8 H 0.082 0.918
9 C 0.082 3.918
10 N -0.268 5.268
11 C -0.076 4.076
12 C -0.056 4.056
13 N -0.268 5.268
14 C -0.032 4.032
15 C -0.081 4.081
16 C -0.131 4.131
17 C -0.137 4.137
18 C -0.127 4.127
19 C -0.059 4.059
20 C -0.146 4.146
21 C -0.021 4.021
22 N -0.247 5.247
23 C -0.010 4.010
24 N -0.245 5.245
25 C -0.017 4.017
26 C -0.111 4.111
27 C -0.056 4.056
28 C -0.059 4.059
29 H 0.073 0.927
30 H -0.026 1.026
31 H 0.022 0.978
32 H 0.037 0.963
33 H 0.090 0.910
34 H 0.120 0.880
35 H 0.060 0.940
36 H 0.117 0.883
37 H 0.069 0.931
38 H 0.147 0.853
39 H 0.165 0.835
40 H 0.165 0.835
41 H 0.200 0.800
42 H 0.237 0.763
43 H 0.210 0.790
44 H 0.151 0.849
45 H 0.057 0.943
46 H 0.107 0.893
47 H 0.028 0.972
48 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 13.403 -22.555 -10.414 28.228
hybrid contribution -0.013 1.744 0.666 1.867
sum 13.391 -20.811 -9.748 26.597
Atomic orbital electron populations
1.70093 1.07814 1.27937 1.51731 1.25957 0.95769 1.03336 0.94765
0.85355 0.78584 0.78081 0.78445 1.19792 1.20724 1.18728 1.21441
0.93581 0.90983 1.50099 0.91842 1.19346 0.90104 0.89129 0.93187
1.62238 1.27222 1.03104 1.34267 1.22184 0.95848 0.89639 0.99914
1.22090 0.95277 0.98206 0.90025 1.62158 1.26435 1.03291 1.34888
1.21082 0.94337 0.94760 0.93009 1.19723 0.95290 0.97071 0.96001
1.21423 0.95640 0.98494 0.97509 1.21332 1.00802 0.98503 0.93016
1.21448 0.94444 0.96116 1.00659 1.18470 0.96329 0.98197 0.92862
1.20617 0.97908 0.99675 0.96431 1.23725 0.90495 0.88558 0.99308
1.68463 1.33654 1.18970 1.03657 1.25552 0.88867 0.94354 0.92181
1.68475 1.10367 1.08864 1.36810 1.23801 0.98285 0.91595 0.88023
1.21159 0.99332 0.98425 0.92138 1.22102 0.94580 0.87780 1.01151
1.21959 0.95710 0.98540 0.89663 0.92670 1.02562 0.97790 0.96345
0.91025 0.87968 0.94014 0.88268 0.93098 0.85304 0.83502 0.83526
0.80009 0.76342 0.78993 0.84904 0.94264 0.89328 0.97245 0.91542
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -57.08 13.29 21.45 0.28 -56.79 16
2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16
3 Si 0.97 44.44 29.54 68.60 2.03 46.46 16
4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16
5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16
6 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16
7 C -0.52 -30.03 8.47 25.60 0.22 -29.81 16
8 H 0.06 3.55 7.13 -2.91 -0.02 3.53 16
9 C 0.21 11.46 4.72 85.56 0.40 11.86 16
10 N -0.54 -24.06 4.70 -900.29 -4.23 -28.29 16
11 C 0.05 1.92 5.61 86.31 0.48 2.40 16
12 C 0.07 1.93 5.61 86.31 0.48 2.41 16
13 N -0.54 -14.08 4.70 -900.28 -4.23 -18.31 16
14 C 0.09 1.78 5.11 85.56 0.44 2.22 16
15 C -0.08 -1.47 4.89 -19.90 -0.10 -1.56 16
16 C -0.11 -1.88 7.91 22.31 0.18 -1.71 16
17 C -0.12 -1.68 10.03 22.24 0.22 -1.46 16
18 C -0.11 -1.50 9.45 22.48 0.21 -1.29 16
19 C -0.06 -0.94 5.88 -20.04 -0.12 -1.06 16
20 C -0.14 -2.36 5.91 -19.86 -0.12 -2.48 16
21 C 0.14 2.55 10.70 84.99 0.91 3.45 16
22 N -0.53 -10.37 10.42 -199.20 -2.08 -12.44 16
23 C 0.28 4.69 12.27 180.86 2.22 6.91 16
24 N -0.53 -9.56 10.42 -199.20 -2.08 -11.64 16
25 C 0.15 2.30 10.70 84.99 0.91 3.21 16
26 C -0.09 -1.60 9.10 22.48 0.20 -1.40 16
27 C 0.07 2.13 5.25 86.31 0.45 2.58 16
28 C 0.07 2.79 5.43 86.31 0.47 3.26 16
29 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16
30 H -0.04 -2.62 8.12 -2.39 -0.02 -2.64 16
31 H 0.00 0.24 8.03 -2.39 -0.02 0.22 16
32 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16
33 H 0.07 2.56 8.07 -2.39 -0.02 2.55 16
34 H 0.10 2.14 8.07 -2.39 -0.02 2.12 16
35 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16
36 H 0.10 1.52 7.97 -2.39 -0.02 1.50 16
37 H 0.05 0.91 8.06 -2.39 -0.02 0.89 16
38 H 0.13 1.98 7.99 -2.91 -0.02 1.95 16
39 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16
40 H 0.15 1.23 6.30 -2.91 -0.02 1.21 16
41 H 0.18 2.52 6.35 -2.91 -0.02 2.50 16
42 H 0.22 2.26 8.06 -2.91 -0.02 2.24 16
43 H 0.19 1.79 6.35 -2.91 -0.02 1.77 16
44 H 0.13 2.00 6.30 -2.91 -0.02 1.98 16
45 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16
46 H 0.09 2.35 5.95 -2.39 -0.01 2.34 16
47 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16
48 H 0.07 2.86 6.79 -2.39 -0.02 2.84 16
Total: -1.00 -71.58 385.34 -1.41 -72.99
By element:
Atomic # 1 Polarization: 9.07 SS G_CDS: 0.96 Total: 10.03 kcal
Atomic # 6 Polarization: -9.94 SS G_CDS: 7.93 Total: -2.01 kcal
Atomic # 7 Polarization: -115.14 SS G_CDS: -12.33 Total: -127.47 kcal
Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal
Total: -71.58 -1.41 -72.99 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001137768824.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 141.420 kcal
(2) G-P(sol) polarization free energy of solvation -71.578 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.842 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.411 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.989 kcal
(6) G-S(sol) free energy of system = (1) + (5) 68.431 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds