Wall clock time and date at job start Tue Mar 31 2020 21:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86803 * 120.00144 * 2 1 4 4 H 1.48502 * 109.47005 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47071 * 299.99641 * 3 2 1 6 6 H 1.48493 * 109.47128 * 59.99977 * 3 2 1 7 7 C 1.37887 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99633 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99931 * 359.97438 * 7 2 1 10 10 N 1.46893 * 109.47225 * 180.02562 * 9 7 2 11 11 C 1.46953 * 111.00034 * 170.00253 * 10 9 7 12 12 C 1.53053 * 109.36455 * 183.18302 * 11 10 9 13 13 N 1.46956 * 109.36803 * 301.59804 * 12 11 10 14 14 C 1.46896 * 111.00277 * 183.18425 * 13 12 11 15 15 C 1.50696 * 109.47097 * 169.99934 * 14 13 12 16 16 C 1.38345 * 119.93838 * 90.00295 * 15 14 13 17 17 C 1.38302 * 120.25623 * 180.02562 * 16 15 14 18 18 C 1.38035 * 120.12127 * 359.97438 * 17 16 15 19 19 C 1.39355 * 119.87499 * 359.97438 * 18 17 16 20 20 C 1.48308 * 120.12214 * 179.97438 * 19 18 17 21 21 N 1.32602 * 119.21517 * 179.73159 * 20 19 18 22 22 C 1.32190 * 120.73791 * 179.71708 * 21 20 19 23 23 C 1.38698 * 119.19474 * 0.54510 * 22 21 20 24 24 C 1.38689 * 118.56644 * 359.73249 * 23 22 21 25 25 N 1.32186 * 119.19728 * 359.97438 * 24 23 22 26 26 C 1.37984 * 119.93709 * 270.02555 * 15 14 13 27 27 C 1.46958 * 110.87709 * 59.31613 * 13 12 11 28 28 C 1.46956 * 110.99539 * 293.79841 * 10 9 7 29 29 H 0.96999 * 120.00207 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.46788 * 60.00153 * 9 7 2 31 31 H 1.09007 * 109.47050 * 300.00783 * 9 7 2 32 32 H 1.09004 * 109.49174 * 63.21997 * 11 10 9 33 33 H 1.09000 * 109.49186 * 303.15141 * 11 10 9 34 34 H 1.09002 * 109.48962 * 181.62786 * 12 11 10 35 35 H 1.09006 * 109.48525 * 61.56594 * 12 11 10 36 36 H 1.09008 * 109.46860 * 49.99957 * 14 13 12 37 37 H 1.08994 * 109.47255 * 290.00147 * 14 13 12 38 38 H 1.08006 * 119.87339 * 0.02562 * 16 15 14 39 39 H 1.08000 * 119.94440 * 179.97438 * 17 16 15 40 40 H 1.08005 * 120.06237 * 179.70070 * 18 17 16 41 41 H 1.08003 * 120.40509 * 180.25588 * 22 21 20 42 42 H 1.08006 * 120.71493 * 179.75024 * 23 22 21 43 43 H 1.08002 * 120.40068 * 180.02562 * 24 23 22 44 44 H 1.07997 * 120.06786 * 359.95075 * 26 15 14 45 45 H 1.09004 * 109.49281 * 60.65161 * 27 13 12 46 46 H 1.09001 * 109.48838 * 180.70924 * 27 13 12 47 47 H 1.09006 * 109.49150 * 296.77844 * 28 10 9 48 48 H 1.09003 * 109.49419 * 56.82532 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 1.5208 -4.8940 0.2376 12 6 2.5562 -6.0188 0.3092 13 7 3.3193 -6.0593 -0.9462 14 6 4.2739 -7.1758 -0.9462 15 6 4.8578 -7.3374 -2.3260 16 6 6.0103 -6.6549 -2.6723 17 6 6.5515 -6.7979 -3.9369 18 6 5.9440 -7.6239 -4.8611 19 6 4.7835 -8.3147 -4.5176 20 6 4.1259 -9.2031 -5.5064 21 7 3.0254 -9.8561 -5.1586 22 6 2.4117 -10.6514 -6.0178 23 6 2.9388 -10.8069 -7.2913 24 6 4.0942 -10.1137 -7.6200 25 7 4.6551 -9.3296 -6.7156 26 6 4.2417 -8.1654 -3.2419 27 6 4.0039 -4.7810 -1.1844 28 6 2.9685 -3.6562 -1.2559 29 1 -0.4850 0.8400 -0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6245 -2.5571 0.8897 32 1 0.8252 -5.0915 -0.5780 33 1 0.9732 -4.8434 1.1788 34 1 2.0483 -6.9719 0.4569 35 1 3.2354 -5.8354 1.1418 36 1 3.7598 -8.0933 -0.6595 37 1 5.0737 -6.9701 -0.2350 38 1 6.4892 -6.0079 -1.9522 39 1 7.4512 -6.2624 -4.2020 40 1 6.3648 -7.7311 -5.8500 41 1 1.5134 -11.1774 -5.7302 42 1 2.4597 -11.4537 -8.0114 43 1 4.5298 -10.2126 -8.6033 44 1 3.3423 -8.6981 -2.9705 45 1 4.6996 -4.5835 -0.3687 46 1 4.5516 -4.8316 -2.1254 47 1 2.2893 -3.8396 -2.0885 48 1 3.4761 -2.7030 -1.4039 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140979773.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:29 Heat of formation + Delta-G solvation = 91.914878 kcal Electronic energy + Delta-G solvation = -28044.748350 eV Core-core repulsion = 24292.684969 eV Total energy + Delta-G solvation = -3752.063381 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.31068 -39.60132 -38.28790 -35.25475 -34.08191 -33.35814 -32.55648 -31.40790 -30.50672 -30.09276 -28.15576 -25.97477 -24.98078 -24.86531 -23.69014 -23.05475 -22.00828 -21.37346 -20.82053 -19.10280 -17.78756 -17.62004 -16.33616 -16.28426 -15.94365 -15.78945 -15.25594 -15.19997 -14.89761 -14.55551 -14.29857 -14.15081 -14.04984 -13.84603 -13.58261 -13.42855 -13.32972 -12.70760 -12.58497 -12.06400 -11.93611 -11.68329 -11.45655 -11.22328 -11.19045 -11.17267 -11.05826 -10.82561 -10.69168 -10.57845 -10.38633 -10.27146 -10.23592 -9.68732 -9.54371 -9.13763 -8.87242 -8.64164 -8.41344 -8.06421 -7.17985 -6.00055 -4.01172 0.15064 0.76800 1.32034 1.47668 3.32458 3.32650 3.39743 3.44549 3.46095 3.80211 3.83390 4.23592 4.31537 4.44802 4.61555 4.72353 4.74318 4.81223 4.90946 5.01094 5.09685 5.21138 5.30698 5.35374 5.35601 5.40995 5.52546 5.61501 5.62163 5.79117 5.86442 5.89094 5.96177 5.96666 5.98020 6.12976 6.24616 6.34837 6.39804 6.48438 6.51124 6.64929 6.68475 6.74951 6.85271 7.23591 7.27571 7.39845 7.43102 7.75442 7.83586 8.12925 8.25223 8.59346 9.06741 9.62898 11.10926 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014797 B = 0.002208 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.782045 B =12680.305139 C =12701.663276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.538 5.538 11 C 0.057 3.943 12 C 0.062 3.938 13 N -0.534 5.534 14 C 0.094 3.906 15 C -0.083 4.083 16 C -0.087 4.087 17 C -0.132 4.132 18 C -0.071 4.071 19 C -0.059 4.059 20 C 0.368 3.632 21 N -0.511 5.511 22 C 0.154 3.846 23 C -0.241 4.241 24 C 0.152 3.848 25 N -0.515 5.515 26 C -0.046 4.046 27 C 0.056 3.944 28 C 0.068 3.932 29 H 0.260 0.740 30 H -0.009 1.009 31 H 0.029 0.971 32 H 0.030 0.970 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.039 0.961 36 H 0.081 0.919 37 H 0.043 0.957 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.133 0.867 41 H 0.170 0.830 42 H 0.148 0.852 43 H 0.169 0.831 44 H 0.136 0.864 45 H 0.037 0.963 46 H 0.073 0.927 47 H 0.028 0.972 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.980 -23.861 -12.092 28.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.264 5.264 11 C -0.073 4.073 12 C -0.066 4.066 13 N -0.259 5.259 14 C -0.033 4.033 15 C -0.084 4.084 16 C -0.106 4.106 17 C -0.150 4.150 18 C -0.091 4.091 19 C -0.061 4.061 20 C 0.105 3.895 21 N -0.224 5.224 22 C -0.013 4.013 23 C -0.263 4.263 24 C -0.015 4.015 25 N -0.229 5.229 26 C -0.066 4.066 27 C -0.072 4.072 28 C -0.061 4.061 29 H 0.070 0.930 30 H 0.009 0.991 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.061 0.939 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.151 0.849 41 H 0.187 0.813 42 H 0.165 0.835 43 H 0.186 0.814 44 H 0.154 0.846 45 H 0.056 0.944 46 H 0.091 0.909 47 H 0.046 0.954 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.233 -23.164 -11.430 27.784 hybrid contribution -0.238 0.339 -0.834 0.931 sum 9.995 -22.825 -12.264 27.772 Atomic orbital electron populations 1.69967 1.06061 1.26610 1.51191 1.24998 0.94861 0.99310 0.95529 0.86455 0.80072 0.83500 0.77476 1.19678 1.21124 1.21049 1.21196 0.93470 0.89958 1.49769 0.91892 1.19701 0.90073 0.87344 0.96080 1.62287 1.28105 1.02743 1.33247 1.22060 0.94764 0.89995 1.00438 1.22164 0.96072 0.98617 0.89737 1.62185 1.25489 1.03158 1.35046 1.21002 0.94559 0.95562 0.92226 1.19711 0.95122 0.97216 0.96320 1.21305 0.95204 0.97495 0.96635 1.21062 1.00718 0.99625 0.93573 1.21238 0.93736 0.94374 0.99779 1.18003 0.96655 0.99051 0.92410 1.21380 0.87769 0.91257 0.89133 1.68403 1.09109 1.08242 1.36689 1.23267 0.97415 0.91460 0.89128 1.22944 0.99695 1.03974 0.99662 1.23223 0.91127 0.88768 0.98356 1.68362 1.33347 1.18746 1.02445 1.21117 0.98357 0.96082 0.91053 1.22325 0.96196 0.88489 1.00209 1.21977 0.95464 0.97382 0.91230 0.93013 0.99100 0.95255 0.95154 0.91025 0.91145 0.94270 0.90054 0.93926 0.85771 0.85477 0.84878 0.81271 0.83457 0.81365 0.84590 0.94429 0.90906 0.95419 0.89659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.51 -14.38 8.47 -34.44 -0.29 -14.68 16 8 H 0.06 1.77 7.13 -52.49 -0.37 1.40 16 9 C 0.19 5.16 4.72 -4.98 -0.02 5.13 16 10 N -0.54 -11.98 4.70 -235.91 -1.11 -13.09 16 11 C 0.06 1.06 5.61 -3.77 -0.02 1.04 16 12 C 0.06 0.95 5.61 -3.77 -0.02 0.93 16 13 N -0.53 -8.08 4.70 -235.91 -1.11 -9.19 16 14 C 0.09 1.14 5.11 -4.98 -0.03 1.12 16 15 C -0.08 -1.01 4.89 -104.68 -0.51 -1.52 16 16 C -0.09 -0.97 7.91 -39.52 -0.31 -1.28 16 17 C -0.13 -1.36 10.03 -39.63 -0.40 -1.76 16 18 C -0.07 -0.80 9.56 -39.24 -0.38 -1.18 16 19 C -0.06 -0.74 5.88 -104.91 -0.62 -1.36 16 20 C 0.37 4.54 7.55 -156.93 -1.19 3.35 16 21 N -0.51 -5.93 9.45 -11.14 -0.11 -6.03 16 22 C 0.15 1.24 11.30 -17.23 -0.19 1.05 16 23 C -0.24 -1.52 10.17 -39.24 -0.40 -1.92 16 24 C 0.15 1.16 11.30 -17.23 -0.19 0.96 16 25 N -0.52 -5.68 9.45 -11.14 -0.11 -5.78 16 26 C -0.05 -0.58 9.21 -39.24 -0.36 -0.94 16 27 C 0.06 0.91 5.25 -3.77 -0.02 0.89 16 28 C 0.07 1.39 5.43 -3.77 -0.02 1.37 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 31 H 0.03 0.83 8.03 -51.92 -0.42 0.41 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.30 8.07 -51.93 -0.42 0.89 16 34 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.89 7.97 -51.92 -0.41 0.48 16 37 H 0.04 0.49 8.06 -51.93 -0.42 0.07 16 38 H 0.12 1.24 7.99 -52.48 -0.42 0.82 16 39 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.13 1.37 7.51 -52.48 -0.39 0.97 16 41 H 0.17 0.81 8.06 -52.48 -0.42 0.39 16 42 H 0.15 0.43 8.06 -52.48 -0.42 0.00 16 43 H 0.17 0.69 8.06 -52.49 -0.42 0.26 16 44 H 0.14 1.72 7.51 -52.49 -0.39 1.33 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 1.11 5.95 -51.93 -0.31 0.80 16 47 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.09 1.85 6.79 -51.93 -0.35 1.50 16 LS Contribution 390.22 15.07 5.88 5.88 Total: -1.00 -33.40 390.22 -13.17 -46.57 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -7.27 Total: -1.53 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -5.07 Total: -7.32 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -1.69 Total: -60.44 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.40 -13.17 -46.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140979773.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.485 kcal (2) G-P(sol) polarization free energy of solvation -33.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds