Wall clock time and date at job start Tue Mar 31 2020 21:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86803 * 120.00144 * 2 1 4 4 H 1.48502 * 109.47005 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47071 * 299.99641 * 3 2 1 6 6 H 1.48493 * 109.47128 * 59.99977 * 3 2 1 7 7 C 1.37887 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99633 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99931 * 359.97438 * 7 2 1 10 10 N 1.46893 * 109.47225 * 180.02562 * 9 7 2 11 11 C 1.46953 * 111.00034 * 170.00253 * 10 9 7 12 12 C 1.53053 * 109.36455 * 183.18302 * 11 10 9 13 13 N 1.46956 * 109.36803 * 301.59804 * 12 11 10 14 14 C 1.46896 * 111.00277 * 183.18425 * 13 12 11 15 15 C 1.50696 * 109.47097 * 169.99934 * 14 13 12 16 16 C 1.38345 * 119.93838 * 90.00295 * 15 14 13 17 17 C 1.38302 * 120.25623 * 180.02562 * 16 15 14 18 18 C 1.38035 * 120.12127 * 359.97438 * 17 16 15 19 19 C 1.39355 * 119.87499 * 359.97438 * 18 17 16 20 20 C 1.48308 * 120.12214 * 179.97438 * 19 18 17 21 21 N 1.32602 * 119.21517 * 179.73159 * 20 19 18 22 22 C 1.32190 * 120.73791 * 179.71708 * 21 20 19 23 23 C 1.38698 * 119.19474 * 0.54510 * 22 21 20 24 24 C 1.38689 * 118.56644 * 359.73249 * 23 22 21 25 25 N 1.32186 * 119.19728 * 359.97438 * 24 23 22 26 26 C 1.37984 * 119.93709 * 270.02555 * 15 14 13 27 27 C 1.46958 * 110.87709 * 59.31613 * 13 12 11 28 28 C 1.46956 * 110.99539 * 293.79841 * 10 9 7 29 29 H 0.96999 * 120.00207 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.46788 * 60.00153 * 9 7 2 31 31 H 1.09007 * 109.47050 * 300.00783 * 9 7 2 32 32 H 1.09004 * 109.49174 * 63.21997 * 11 10 9 33 33 H 1.09000 * 109.49186 * 303.15141 * 11 10 9 34 34 H 1.09002 * 109.48962 * 181.62786 * 12 11 10 35 35 H 1.09006 * 109.48525 * 61.56594 * 12 11 10 36 36 H 1.09008 * 109.46860 * 49.99957 * 14 13 12 37 37 H 1.08994 * 109.47255 * 290.00147 * 14 13 12 38 38 H 1.08006 * 119.87339 * 0.02562 * 16 15 14 39 39 H 1.08000 * 119.94440 * 179.97438 * 17 16 15 40 40 H 1.08005 * 120.06237 * 179.70070 * 18 17 16 41 41 H 1.08003 * 120.40509 * 180.25588 * 22 21 20 42 42 H 1.08006 * 120.71493 * 179.75024 * 23 22 21 43 43 H 1.08002 * 120.40068 * 180.02562 * 24 23 22 44 44 H 1.07997 * 120.06786 * 359.95075 * 26 15 14 45 45 H 1.09004 * 109.49281 * 60.65161 * 27 13 12 46 46 H 1.09001 * 109.48838 * 180.70924 * 27 13 12 47 47 H 1.09006 * 109.49150 * 296.77844 * 28 10 9 48 48 H 1.09003 * 109.49419 * 56.82532 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 1.5208 -4.8940 0.2376 12 6 2.5562 -6.0188 0.3092 13 7 3.3193 -6.0593 -0.9462 14 6 4.2739 -7.1758 -0.9462 15 6 4.8578 -7.3374 -2.3260 16 6 6.0103 -6.6549 -2.6723 17 6 6.5515 -6.7979 -3.9369 18 6 5.9440 -7.6239 -4.8611 19 6 4.7835 -8.3147 -4.5176 20 6 4.1259 -9.2031 -5.5064 21 7 3.0254 -9.8561 -5.1586 22 6 2.4117 -10.6514 -6.0178 23 6 2.9388 -10.8069 -7.2913 24 6 4.0942 -10.1137 -7.6200 25 7 4.6551 -9.3296 -6.7156 26 6 4.2417 -8.1654 -3.2419 27 6 4.0039 -4.7810 -1.1844 28 6 2.9685 -3.6562 -1.2559 29 1 -0.4850 0.8400 -0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6245 -2.5571 0.8897 32 1 0.8252 -5.0915 -0.5780 33 1 0.9732 -4.8434 1.1788 34 1 2.0483 -6.9719 0.4569 35 1 3.2354 -5.8354 1.1418 36 1 3.7598 -8.0933 -0.6595 37 1 5.0737 -6.9701 -0.2350 38 1 6.4892 -6.0079 -1.9522 39 1 7.4512 -6.2624 -4.2020 40 1 6.3648 -7.7311 -5.8500 41 1 1.5134 -11.1774 -5.7302 42 1 2.4597 -11.4537 -8.0114 43 1 4.5298 -10.2126 -8.6033 44 1 3.3423 -8.6981 -2.9705 45 1 4.6996 -4.5835 -0.3687 46 1 4.5516 -4.8316 -2.1254 47 1 2.2893 -3.8396 -2.0885 48 1 3.4761 -2.7030 -1.4039 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140979773.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:28 Heat of formation + Delta-G solvation = 70.409492 kcal Electronic energy + Delta-G solvation = -28045.680894 eV Core-core repulsion = 24292.684969 eV Total energy + Delta-G solvation = -3752.995925 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.98414 -40.63898 -39.54600 -36.75008 -34.79204 -34.69629 -33.96941 -32.53331 -31.84211 -30.97115 -29.82261 -27.52967 -25.72228 -25.70280 -25.04268 -24.43761 -23.24993 -22.79985 -21.72235 -20.60376 -18.51646 -18.47844 -18.32275 -17.28875 -17.08306 -16.51639 -16.44328 -16.25087 -15.92606 -15.83408 -15.77917 -15.41450 -15.28786 -14.94533 -14.92828 -14.45517 -14.31569 -14.08232 -13.72076 -13.53772 -13.41186 -13.03742 -12.87607 -12.69721 -12.45987 -12.39031 -12.19616 -12.10487 -12.04356 -11.90753 -11.83870 -11.78378 -11.42765 -11.17904 -10.99353 -10.63384 -10.23186 -9.75703 -9.45955 -9.24605 -9.03289 -8.21528 -6.31994 -0.56680 0.16539 0.45162 0.71183 1.40478 1.41027 1.54952 2.39682 2.54436 2.76566 2.97815 3.10576 3.20270 3.24222 3.30399 3.75732 3.81390 3.96008 4.01977 4.08976 4.20244 4.22144 4.23370 4.26592 4.37680 4.41361 4.46538 4.50476 4.54554 4.68057 4.70159 4.74685 4.87454 4.88039 4.97348 4.99435 5.02923 5.06865 5.14076 5.21486 5.27211 5.36412 5.53863 5.56915 5.62990 5.64410 5.96666 6.01073 6.07985 6.10625 6.12134 6.34181 6.61676 6.84060 7.07151 7.37752 8.90141 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014797 B = 0.002208 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.782045 B =12680.305139 C =12701.663276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.972 3.028 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.064 0.936 9 C 0.208 3.792 10 N -0.542 5.542 11 C 0.053 3.947 12 C 0.072 3.928 13 N -0.546 5.546 14 C 0.099 3.901 15 C -0.091 4.091 16 C -0.094 4.094 17 C -0.128 4.128 18 C -0.078 4.078 19 C -0.073 4.073 20 C 0.339 3.661 21 N -0.540 5.540 22 C 0.136 3.864 23 C -0.221 4.221 24 C 0.138 3.862 25 N -0.536 5.536 26 C -0.059 4.059 27 C 0.071 3.929 28 C 0.070 3.930 29 H 0.265 0.735 30 H -0.044 1.044 31 H 0.005 0.995 32 H 0.016 0.984 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.044 0.956 36 H 0.095 0.905 37 H 0.056 0.944 38 H 0.138 0.862 39 H 0.152 0.848 40 H 0.139 0.861 41 H 0.198 0.802 42 H 0.188 0.812 43 H 0.203 0.797 44 H 0.127 0.873 45 H 0.043 0.957 46 H 0.087 0.913 47 H 0.007 0.993 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.709 -25.017 -13.009 30.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.796 3.204 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.082 0.918 9 C 0.082 3.918 10 N -0.267 5.267 11 C -0.075 4.075 12 C -0.056 4.056 13 N -0.271 5.271 14 C -0.027 4.027 15 C -0.092 4.092 16 C -0.113 4.113 17 C -0.146 4.146 18 C -0.098 4.098 19 C -0.075 4.075 20 C 0.075 3.925 21 N -0.254 5.254 22 C -0.030 4.030 23 C -0.242 4.242 24 C -0.027 4.027 25 N -0.250 5.250 26 C -0.079 4.079 27 C -0.057 4.057 28 C -0.058 4.058 29 H 0.073 0.927 30 H -0.026 1.026 31 H 0.023 0.977 32 H 0.035 0.965 33 H 0.092 0.908 34 H 0.118 0.882 35 H 0.062 0.938 36 H 0.113 0.887 37 H 0.074 0.926 38 H 0.156 0.844 39 H 0.170 0.830 40 H 0.156 0.844 41 H 0.215 0.785 42 H 0.206 0.794 43 H 0.220 0.780 44 H 0.145 0.855 45 H 0.061 0.939 46 H 0.105 0.895 47 H 0.025 0.975 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.972 -24.360 -12.354 29.822 hybrid contribution -0.862 0.553 -0.679 1.229 sum 11.109 -23.807 -13.033 29.327 Atomic orbital electron populations 1.70098 1.07825 1.27877 1.51823 1.25967 0.95782 1.03364 0.94767 0.85292 0.79001 0.78342 0.77734 1.18541 1.20440 1.20277 1.21473 0.93606 0.90947 1.49968 0.91808 1.19358 0.90118 0.89152 0.93191 1.62241 1.27186 1.03076 1.34173 1.22181 0.95802 0.89647 0.99899 1.22084 0.95318 0.98152 0.90001 1.62128 1.26583 1.03336 1.35067 1.21026 0.94375 0.94647 0.92691 1.19759 0.95660 0.97574 0.96204 1.21503 0.95012 0.97569 0.97255 1.21356 1.01183 0.98991 0.93045 1.21389 0.93588 0.94531 1.00314 1.18268 0.97145 0.99372 0.92674 1.21411 0.88737 0.92501 0.89866 1.68369 1.09456 1.09315 1.38236 1.23896 0.98219 0.91119 0.89726 1.23377 0.98562 1.02804 0.99435 1.23927 0.91656 0.88081 0.99071 1.68344 1.34144 1.19946 1.02564 1.21096 0.98463 0.96806 0.91555 1.22111 0.94658 0.87688 1.01204 1.21959 0.95690 0.98545 0.89643 0.92668 1.02631 0.97703 0.96541 0.90842 0.88221 0.93752 0.88700 0.92556 0.84382 0.83026 0.84363 0.78532 0.79427 0.78019 0.85460 0.93906 0.89498 0.97452 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.75 13.29 21.45 0.28 -57.47 16 2 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 3 Si 0.97 45.10 29.54 68.60 2.03 47.12 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.52 -30.46 8.47 25.60 0.22 -30.24 16 8 H 0.06 3.64 7.13 -2.91 -0.02 3.62 16 9 C 0.21 11.67 4.72 85.56 0.40 12.07 16 10 N -0.54 -24.81 4.70 -900.28 -4.23 -29.04 16 11 C 0.05 2.03 5.61 86.31 0.48 2.52 16 12 C 0.07 2.10 5.61 86.31 0.48 2.59 16 13 N -0.55 -15.87 4.70 -900.27 -4.23 -20.10 16 14 C 0.10 2.23 5.11 85.56 0.44 2.67 16 15 C -0.09 -2.12 4.89 -19.90 -0.10 -2.22 16 16 C -0.09 -1.94 7.91 22.31 0.18 -1.77 16 17 C -0.13 -2.47 10.03 22.24 0.22 -2.24 16 18 C -0.08 -1.73 9.56 22.49 0.22 -1.52 16 19 C -0.07 -1.84 5.88 -20.05 -0.12 -1.96 16 20 C 0.34 8.44 7.55 137.53 1.04 9.48 16 21 N -0.54 -12.55 9.45 -189.15 -1.79 -14.33 16 22 C 0.14 2.01 11.30 84.75 0.96 2.97 16 23 C -0.22 -2.21 10.17 22.49 0.23 -1.98 16 24 C 0.14 1.84 11.30 84.75 0.96 2.80 16 25 N -0.54 -11.54 9.45 -189.16 -1.79 -13.33 16 26 C -0.06 -1.49 9.21 22.49 0.21 -1.28 16 27 C 0.07 2.28 5.25 86.31 0.45 2.73 16 28 C 0.07 2.94 5.43 86.31 0.47 3.41 16 29 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 30 H -0.04 -2.72 8.12 -2.39 -0.02 -2.73 16 31 H 0.00 0.29 8.03 -2.38 -0.02 0.27 16 32 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.07 2.73 8.07 -2.39 -0.02 2.71 16 34 H 0.10 2.36 8.07 -2.39 -0.02 2.34 16 35 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.09 1.88 7.97 -2.38 -0.02 1.86 16 37 H 0.06 1.14 8.06 -2.39 -0.02 1.12 16 38 H 0.14 2.41 7.99 -2.91 -0.02 2.39 16 39 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 40 H 0.14 2.81 7.51 -2.91 -0.02 2.79 16 41 H 0.20 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.19 0.27 8.06 -2.91 -0.02 0.25 16 43 H 0.20 1.07 8.06 -2.91 -0.02 1.04 16 44 H 0.13 3.33 7.51 -2.91 -0.02 3.31 16 45 H 0.04 1.33 8.14 -2.38 -0.02 1.32 16 46 H 0.09 2.54 5.95 -2.39 -0.01 2.52 16 47 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 48 H 0.07 3.03 6.79 -2.39 -0.02 3.02 16 Total: -1.00 -75.63 390.22 -1.58 -77.21 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.95 Total: 11.53 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 7.20 Total: -1.59 kcal Atomic # 7 Polarization: -122.52 SS G_CDS: -11.76 Total: -134.27 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -75.63 -1.58 -77.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140979773.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.622 kcal (2) G-P(sol) polarization free energy of solvation -75.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds