Wall clock time and date at job start Tue Mar 31 2020 21:35:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 N 1.46493 * 109.46975 * 2 1
4 4 C 1.36934 * 120.00710 * 84.13450 * 3 2 1
5 5 H 1.08002 * 119.99641 * 30.63416 * 4 3 2
6 6 C 1.38810 * 120.00543 * 210.91711 * 4 3 2
7 7 N 1.31620 * 119.99835 * 15.55364 * 6 4 3
8 8 Si 1.86798 * 120.00137 * 195.55944 * 6 4 3
9 9 H 1.48502 * 109.47212 * 359.97438 * 8 6 4
10 10 H 1.48497 * 109.47324 * 119.99411 * 8 6 4
11 11 H 1.48496 * 109.47097 * 239.99989 * 8 6 4
12 12 C 1.46503 * 119.99784 * 264.12853 * 3 2 1
13 13 H 1.09003 * 109.47381 * 183.39882 * 12 3 2
14 14 C 1.53006 * 109.46748 * 63.40742 * 12 3 2
15 15 C 1.52996 * 109.47693 * 303.40807 * 12 3 2
16 16 N 1.46503 * 109.46732 * 304.99695 * 15 12 3
17 17 C 1.34776 * 119.99927 * 179.97438 * 16 15 12
18 18 O 1.21276 * 119.99966 * 0.02562 * 17 16 15
19 19 C 1.50700 * 119.99953 * 180.02562 * 17 16 15
20 20 H 1.09001 * 109.47296 * 304.99977 * 19 17 16
21 21 C 1.52997 * 109.47200 * 65.00067 * 19 17 16
22 22 O 1.42900 * 109.47184 * 184.99902 * 19 17 16
23 23 C 1.35960 * 117.00249 * 154.98820 * 22 19 17
24 24 C 1.38668 * 120.05960 * 5.94826 * 23 22 19
25 25 C 1.38176 * 119.96517 * 179.72140 * 24 23 22
26 26 C 1.38263 * 120.09796 * 0.55398 * 25 24 23
27 27 C 1.38253 * 120.12566 * 359.72182 * 26 25 24
28 28 C 1.38342 * 120.02983 * 0.02562 * 27 26 25
29 29 F 1.35098 * 120.04526 * 180.02562 * 28 27 26
30 30 H 1.08996 * 109.47428 * 60.00119 * 1 2 3
31 31 H 1.08999 * 109.47338 * 180.02562 * 1 2 3
32 32 H 1.08999 * 109.47072 * 299.99651 * 1 2 3
33 33 H 1.08998 * 109.47031 * 239.99564 * 2 1 3
34 34 H 1.09006 * 109.47428 * 119.99773 * 2 1 3
35 35 H 0.97001 * 119.99923 * 180.02562 * 7 6 4
36 36 H 1.08994 * 109.46909 * 299.99356 * 14 12 3
37 37 H 1.08994 * 109.47280 * 59.99898 * 14 12 3
38 38 H 1.09005 * 109.46924 * 179.97438 * 14 12 3
39 39 H 1.08994 * 109.47146 * 64.99160 * 15 12 3
40 40 H 1.08994 * 109.47562 * 185.00203 * 15 12 3
41 41 H 0.97002 * 120.00091 * 0.02562 * 16 15 12
42 42 H 1.09003 * 109.47100 * 299.99961 * 21 19 17
43 43 H 1.09000 * 109.47524 * 60.00040 * 21 19 17
44 44 H 1.09005 * 109.46935 * 180.02562 * 21 19 17
45 45 H 1.07997 * 120.01006 * 359.97381 * 24 23 22
46 46 H 1.07996 * 119.95123 * 180.27666 * 25 24 23
47 47 H 1.07994 * 119.93879 * 179.74757 * 26 25 24
48 48 H 1.07998 * 119.98933 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.1323 2.0672 1.1796
5 1 2.3532 1.5363 2.0938
6 6 1.9582 3.4442 1.2014
7 7 1.3917 4.0521 0.1807
8 14 2.5279 4.4344 2.6793
9 1 3.1278 3.5215 3.6854
10 1 3.5415 5.4299 2.2472
11 1 1.3671 5.1387 3.2806
12 6 2.3848 2.0285 -1.2621
13 1 2.7795 3.0240 -1.0587
14 6 1.1472 2.1432 -2.1546
15 6 3.4507 1.1926 -1.9734
16 7 4.5873 0.9824 -1.0732
17 6 5.6523 0.2681 -1.4881
18 8 5.6699 -0.2001 -2.6067
19 6 6.8212 0.0513 -0.5619
20 1 7.1888 1.0148 -0.2090
21 6 6.3750 -0.7931 0.6334
22 8 7.8644 -0.6289 -1.2627
23 6 9.1320 -0.4551 -0.8030
24 6 9.3550 0.2508 0.3696
25 6 10.6437 0.4213 0.8380
26 6 11.7124 -0.1011 0.1334
27 6 11.4951 -0.8007 -1.0391
28 6 10.2066 -0.9791 -1.5102
29 9 9.9938 -1.6631 -2.6556
30 1 -0.3634 0.5138 -0.8899
31 1 -0.3634 -1.0276 0.0005
32 1 -0.3633 0.5138 0.8900
33 1 1.8933 -0.5139 -0.8899
34 1 1.8934 -0.5138 0.8900
35 1 1.2703 5.0144 0.1957
36 1 0.7525 1.1478 -2.3580
37 1 0.3878 2.7387 -1.6479
38 1 1.4198 2.6253 -3.0935
39 1 3.0278 0.2286 -2.2559
40 1 3.7875 1.7177 -2.8672
41 1 4.5730 1.3566 -0.1784
42 1 5.5792 -0.2743 1.1679
43 1 6.0074 -1.7567 0.2806
44 1 7.2204 -0.9496 1.3035
45 1 8.5215 0.6636 0.9183
46 1 10.8168 0.9673 1.7536
47 1 12.7189 0.0372 0.4997
48 1 12.3315 -1.2075 -1.5880
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001153548940.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:35:21
Heat of formation + Delta-G solvation = -71.999923 kcal
Electronic energy + Delta-G solvation = -30190.483062 eV
Core-core repulsion = 25968.249825 eV
Total energy + Delta-G solvation = -4222.233236 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-48.84011 -40.59780 -39.14757 -37.58118 -36.81282 -33.91048 -32.33938 -31.88640
-30.93310 -30.61866 -29.70289 -28.36832 -25.92134 -24.48041 -23.96697 -22.99279
-22.40769 -21.65270 -19.91270 -19.34574 -18.72466 -17.54976 -17.11604 -16.86016
-16.20058 -16.09492 -15.64085 -15.37034 -14.98091 -14.77381 -14.68629 -14.55055
-14.06636 -13.89836 -13.50797 -13.25952 -13.08361 -12.76063 -12.64497 -12.46627
-12.31956 -12.14462 -11.95501 -11.77578 -11.63507 -11.46358 -11.34558 -11.28793
-11.12197 -11.07516 -10.88965 -10.51947 -10.32993 -9.98838 -9.63664 -9.55441
-9.46253 -9.17169 -8.61882 -8.51192 -8.38545 -6.77534 -5.93134 -3.40159
0.87240 1.01579 2.60144 2.86986 3.25163 3.33773 3.34446 3.36050
3.74505 4.07100 4.36103 4.48641 4.54152 4.65398 4.83393 4.94210
4.96128 4.97224 5.21511 5.23615 5.32765 5.51156 5.53463 5.73241
5.80394 5.85369 5.92336 6.00407 6.06326 6.10901 6.12181 6.28832
6.40385 6.41205 6.46274 6.52498 6.66654 6.68766 6.75710 6.92754
6.97255 7.11884 7.23340 7.47948 7.57314 7.71670 7.99381 8.35399
8.57937 9.10153 9.71639 10.27165 11.13633
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.013798 B = 0.003056 C = 0.002709
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2028.732303 B = 9159.159337 C =10334.965090
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C 0.142 3.858
3 N -0.584 5.584
4 C -0.260 4.260
5 H 0.066 0.934
6 C 0.009 3.991
7 N -0.892 5.892
8 Si 0.897 3.103
9 H -0.278 1.278
10 H -0.289 1.289
11 H -0.291 1.291
12 C 0.178 3.822
13 H 0.104 0.896
14 C -0.143 4.143
15 C 0.102 3.898
16 N -0.696 5.696
17 C 0.511 3.489
18 O -0.534 6.534
19 C 0.066 3.934
20 H 0.098 0.902
21 C -0.175 4.175
22 O -0.277 6.277
23 C 0.103 3.897
24 C -0.187 4.187
25 C -0.088 4.088
26 C -0.134 4.134
27 C -0.118 4.118
28 C 0.068 3.932
29 F -0.130 7.130
30 H 0.050 0.950
31 H 0.027 0.973
32 H 0.052 0.948
33 H 0.037 0.963
34 H 0.036 0.964
35 H 0.254 0.746
36 H 0.029 0.971
37 H 0.081 0.919
38 H 0.029 0.971
39 H 0.055 0.945
40 H 0.056 0.944
41 H 0.411 0.589
42 H 0.089 0.911
43 H 0.074 0.926
44 H 0.071 0.929
45 H 0.142 0.858
46 H 0.132 0.868
47 H 0.133 0.867
48 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.445 -6.267 1.750 16.759
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C 0.016 3.984
3 N -0.305 5.305
4 C -0.390 4.390
5 H 0.084 0.916
6 C -0.191 4.191
7 N -0.536 5.536
8 Si 0.727 3.273
9 H -0.203 1.203
10 H -0.216 1.216
11 H -0.217 1.217
12 C 0.071 3.929
13 H 0.122 0.878
14 C -0.203 4.203
15 C -0.023 4.023
16 N -0.349 5.349
17 C 0.294 3.706
18 O -0.411 6.411
19 C 0.006 3.994
20 H 0.116 0.884
21 C -0.233 4.233
22 O -0.189 6.189
23 C 0.056 3.944
24 C -0.205 4.205
25 C -0.107 4.107
26 C -0.152 4.152
27 C -0.137 4.137
28 C 0.048 3.952
29 F -0.109 7.109
30 H 0.069 0.931
31 H 0.046 0.954
32 H 0.071 0.929
33 H 0.056 0.944
34 H 0.054 0.946
35 H 0.064 0.936
36 H 0.048 0.952
37 H 0.100 0.900
38 H 0.048 0.952
39 H 0.073 0.927
40 H 0.074 0.926
41 H 0.248 0.752
42 H 0.108 0.892
43 H 0.093 0.907
44 H 0.090 0.910
45 H 0.160 0.840
46 H 0.150 0.850
47 H 0.151 0.849
48 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges 15.309 -6.571 0.719 16.675
hybrid contribution -0.048 0.839 1.157 1.430
sum 15.261 -5.731 1.876 16.409
Atomic orbital electron populations
1.22388 0.99773 0.98375 1.02098 1.20800 0.91960 0.87599 0.98077
1.44007 1.73787 1.09774 1.02982 1.19187 1.42627 0.89627 0.87529
0.91601 1.25116 0.98680 0.98081 0.97206 1.69988 1.43652 1.08964
1.30954 0.86323 0.78195 0.80242 0.82567 1.20275 1.21605 1.21744
1.20522 0.90812 0.96604 0.84996 0.87848 1.22122 1.00564 0.99567
0.98006 1.22186 0.86859 1.00716 0.92514 1.45814 1.17006 1.52917
1.19141 1.19892 0.83571 0.79577 0.87571 1.90710 1.80450 1.49486
1.20408 1.22334 0.87116 0.97312 0.92658 0.88435 1.22339 1.03112
1.01626 0.96219 1.86288 1.11724 1.66606 1.54281 1.19139 0.84567
0.97084 0.93590 1.21316 0.99233 1.03383 0.96601 1.21036 0.91592
0.98347 0.99688 1.20919 0.99615 0.99594 0.95098 1.21026 0.94458
1.00473 0.97698 1.17035 0.91980 1.00589 0.85558 1.91523 1.95576
1.77207 1.46597 0.93139 0.95360 0.92918 0.94434 0.94600 0.93589
0.95167 0.90019 0.95156 0.92673 0.92574 0.75220 0.89236 0.90672
0.90964 0.84030 0.84963 0.84924 0.84145
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.14 10.02 37.16 0.37 -2.76 16
2 C 0.14 2.74 5.72 -4.05 -0.02 2.71 16
3 N -0.58 -12.41 1.83 -165.66 -0.30 -12.71 16
4 C -0.26 -6.11 9.49 -15.06 -0.14 -6.25 16
5 H 0.07 1.55 7.88 -52.49 -0.41 1.14 16
6 C 0.01 0.22 4.91 -17.43 -0.09 0.13 16
7 N -0.89 -22.76 10.12 55.49 0.56 -22.20 16
8 Si 0.90 19.47 29.58 -169.99 -5.03 14.44 16
9 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16
10 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16
11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16
12 C 0.18 3.66 1.92 -67.93 -0.13 3.53 16
13 H 0.10 2.42 5.97 -51.93 -0.31 2.11 16
14 C -0.14 -2.88 8.24 37.16 0.31 -2.58 16
15 C 0.10 1.91 4.86 -4.04 -0.02 1.89 16
16 N -0.70 -11.96 5.35 -60.30 -0.32 -12.29 16
17 C 0.51 8.94 7.18 -10.99 -0.08 8.86 16
18 O -0.53 -11.50 16.51 -14.30 -0.24 -11.73 16
19 C 0.07 0.91 2.63 -27.88 -0.07 0.84 16
20 H 0.10 1.13 6.34 -51.93 -0.33 0.80 16
21 C -0.18 -2.03 9.12 37.16 0.34 -1.69 16
22 O -0.28 -4.39 9.20 -39.47 -0.36 -4.76 16
23 C 0.10 1.37 6.61 -39.18 -0.26 1.11 16
24 C -0.19 -1.92 8.24 -39.45 -0.33 -2.25 16
25 C -0.09 -0.73 10.04 -39.60 -0.40 -1.13 16
26 C -0.13 -1.06 10.04 -39.57 -0.40 -1.46 16
27 C -0.12 -1.12 10.02 -39.54 -0.40 -1.52 16
28 C 0.07 0.89 7.31 -39.30 -0.29 0.60 16
29 F -0.13 -1.96 17.11 2.25 0.04 -1.93 16
30 H 0.05 0.98 6.05 -51.93 -0.31 0.66 16
31 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16
32 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16
33 H 0.04 0.70 6.36 -51.93 -0.33 0.37 16
34 H 0.04 0.68 8.09 -51.93 -0.42 0.26 16
35 H 0.25 6.41 8.31 -40.82 -0.34 6.08 16
36 H 0.03 0.57 6.52 -51.93 -0.34 0.23 16
37 H 0.08 1.88 7.17 -51.93 -0.37 1.50 16
38 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16
39 H 0.05 1.06 6.76 -51.93 -0.35 0.71 16
40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16
41 H 0.41 6.87 7.85 -40.82 -0.32 6.55 16
42 H 0.09 0.99 7.92 -51.93 -0.41 0.58 16
43 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16
44 H 0.07 0.70 6.88 -51.93 -0.36 0.34 16
45 H 0.14 1.25 5.41 -52.49 -0.28 0.97 16
46 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16
47 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16
48 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16
LS Contribution 389.77 15.07 5.87 5.87
Total: -1.00 -29.01 389.77 -8.45 -37.45
By element:
Atomic # 1 Polarization: 14.90 SS G_CDS: -7.07 Total: 7.83 kcal
Atomic # 6 Polarization: 1.62 SS G_CDS: -1.60 Total: 0.02 kcal
Atomic # 7 Polarization: -47.14 SS G_CDS: -0.06 Total: -47.20 kcal
Atomic # 8 Polarization: -15.89 SS G_CDS: -0.60 Total: -16.49 kcal
Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.93 kcal
Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.44 kcal
Total LS contribution 5.87 Total: 5.87 kcal
Total: -29.01 -8.45 -37.45 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001153548940.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.546 kcal
(2) G-P(sol) polarization free energy of solvation -29.005 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.551 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.454 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.000 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds