Wall clock time and date at job start Tue Mar 31 2020 21:35:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 N 1.46493 * 109.46975 * 2 1
4 4 C 1.36934 * 120.00710 * 84.13450 * 3 2 1
5 5 H 1.08002 * 119.99641 * 30.63416 * 4 3 2
6 6 C 1.38810 * 120.00543 * 210.91711 * 4 3 2
7 7 N 1.31620 * 119.99835 * 15.55364 * 6 4 3
8 8 Si 1.86798 * 120.00137 * 195.55944 * 6 4 3
9 9 H 1.48502 * 109.47212 * 359.97438 * 8 6 4
10 10 H 1.48497 * 109.47324 * 119.99411 * 8 6 4
11 11 H 1.48496 * 109.47097 * 239.99989 * 8 6 4
12 12 C 1.46503 * 119.99784 * 264.12853 * 3 2 1
13 13 H 1.09003 * 109.47381 * 183.39882 * 12 3 2
14 14 C 1.53006 * 109.46748 * 63.40742 * 12 3 2
15 15 C 1.52996 * 109.47693 * 303.40807 * 12 3 2
16 16 N 1.46503 * 109.46732 * 304.99695 * 15 12 3
17 17 C 1.34776 * 119.99927 * 179.97438 * 16 15 12
18 18 O 1.21276 * 119.99966 * 0.02562 * 17 16 15
19 19 C 1.50700 * 119.99953 * 180.02562 * 17 16 15
20 20 H 1.09001 * 109.47296 * 304.99977 * 19 17 16
21 21 C 1.52997 * 109.47200 * 65.00067 * 19 17 16
22 22 O 1.42900 * 109.47184 * 184.99902 * 19 17 16
23 23 C 1.35960 * 117.00249 * 154.98820 * 22 19 17
24 24 C 1.38668 * 120.05960 * 5.94826 * 23 22 19
25 25 C 1.38176 * 119.96517 * 179.72140 * 24 23 22
26 26 C 1.38263 * 120.09796 * 0.55398 * 25 24 23
27 27 C 1.38253 * 120.12566 * 359.72182 * 26 25 24
28 28 C 1.38342 * 120.02983 * 0.02562 * 27 26 25
29 29 F 1.35098 * 120.04526 * 180.02562 * 28 27 26
30 30 H 1.08996 * 109.47428 * 60.00119 * 1 2 3
31 31 H 1.08999 * 109.47338 * 180.02562 * 1 2 3
32 32 H 1.08999 * 109.47072 * 299.99651 * 1 2 3
33 33 H 1.08998 * 109.47031 * 239.99564 * 2 1 3
34 34 H 1.09006 * 109.47428 * 119.99773 * 2 1 3
35 35 H 0.97001 * 119.99923 * 180.02562 * 7 6 4
36 36 H 1.08994 * 109.46909 * 299.99356 * 14 12 3
37 37 H 1.08994 * 109.47280 * 59.99898 * 14 12 3
38 38 H 1.09005 * 109.46924 * 179.97438 * 14 12 3
39 39 H 1.08994 * 109.47146 * 64.99160 * 15 12 3
40 40 H 1.08994 * 109.47562 * 185.00203 * 15 12 3
41 41 H 0.97002 * 120.00091 * 0.02562 * 16 15 12
42 42 H 1.09003 * 109.47100 * 299.99961 * 21 19 17
43 43 H 1.09000 * 109.47524 * 60.00040 * 21 19 17
44 44 H 1.09005 * 109.46935 * 180.02562 * 21 19 17
45 45 H 1.07997 * 120.01006 * 359.97381 * 24 23 22
46 46 H 1.07996 * 119.95123 * 180.27666 * 25 24 23
47 47 H 1.07994 * 119.93879 * 179.74757 * 26 25 24
48 48 H 1.07998 * 119.98933 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.1323 2.0672 1.1796
5 1 2.3532 1.5363 2.0938
6 6 1.9582 3.4442 1.2014
7 7 1.3917 4.0521 0.1807
8 14 2.5279 4.4344 2.6793
9 1 3.1278 3.5215 3.6854
10 1 3.5415 5.4299 2.2472
11 1 1.3671 5.1387 3.2806
12 6 2.3848 2.0285 -1.2621
13 1 2.7795 3.0240 -1.0587
14 6 1.1472 2.1432 -2.1546
15 6 3.4507 1.1926 -1.9734
16 7 4.5873 0.9824 -1.0732
17 6 5.6523 0.2681 -1.4881
18 8 5.6699 -0.2001 -2.6067
19 6 6.8212 0.0513 -0.5619
20 1 7.1888 1.0148 -0.2090
21 6 6.3750 -0.7931 0.6334
22 8 7.8644 -0.6289 -1.2627
23 6 9.1320 -0.4551 -0.8030
24 6 9.3550 0.2508 0.3696
25 6 10.6437 0.4213 0.8380
26 6 11.7124 -0.1011 0.1334
27 6 11.4951 -0.8007 -1.0391
28 6 10.2066 -0.9791 -1.5102
29 9 9.9938 -1.6631 -2.6556
30 1 -0.3634 0.5138 -0.8899
31 1 -0.3634 -1.0276 0.0005
32 1 -0.3633 0.5138 0.8900
33 1 1.8933 -0.5139 -0.8899
34 1 1.8934 -0.5138 0.8900
35 1 1.2703 5.0144 0.1957
36 1 0.7525 1.1478 -2.3580
37 1 0.3878 2.7387 -1.6479
38 1 1.4198 2.6253 -3.0935
39 1 3.0278 0.2286 -2.2559
40 1 3.7875 1.7177 -2.8672
41 1 4.5730 1.3566 -0.1784
42 1 5.5792 -0.2743 1.1679
43 1 6.0074 -1.7567 0.2806
44 1 7.2204 -0.9496 1.3035
45 1 8.5215 0.6636 0.9183
46 1 10.8168 0.9673 1.7536
47 1 12.7189 0.0372 0.4997
48 1 12.3315 -1.2075 -1.5880
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001153548940.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:35:20
Heat of formation + Delta-G solvation = -87.033700 kcal
Electronic energy + Delta-G solvation = -30191.134975 eV
Core-core repulsion = 25968.249825 eV
Total energy + Delta-G solvation = -4222.885150 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-49.84033 -41.66324 -40.37994 -38.75846 -38.20707 -35.44666 -33.77351 -33.39352
-32.11830 -31.62933 -30.54604 -30.07984 -27.35382 -25.87663 -25.38638 -23.87693
-23.34440 -23.21335 -21.27822 -20.94826 -19.65493 -18.96377 -18.34853 -18.00295
-17.30631 -17.15619 -16.91188 -16.57264 -16.49504 -16.13445 -15.81795 -15.49490
-15.40847 -15.29786 -15.04307 -14.41751 -14.20008 -14.08107 -13.96824 -13.66388
-13.48627 -13.31401 -13.22366 -13.07364 -12.98607 -12.92418 -12.78766 -12.63022
-12.61041 -12.19085 -12.17486 -12.01749 -11.98650 -11.72249 -11.27004 -11.24719
-10.86590 -10.43701 -10.02266 -9.93578 -9.25275 -8.54782 -7.77496 -5.25251
0.12523 0.24542 1.49394 1.52127 1.53380 1.58404 1.64609 2.54530
2.59410 2.60688 3.24512 3.38615 3.50311 3.65483 3.71641 3.79793
3.84305 3.96334 4.23016 4.25936 4.33587 4.44340 4.47285 4.53404
4.61764 4.67895 4.73227 4.85238 4.89440 4.92418 4.97909 5.04174
5.09058 5.10301 5.10665 5.18438 5.26491 5.35264 5.43021 5.45105
5.62190 5.67970 5.77424 5.78455 5.93279 6.20733 6.52152 6.59836
7.18097 7.28010 7.95698 8.47152 9.27334
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.013798 B = 0.003056 C = 0.002709
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2028.732303 B = 9159.159337 C =10334.965090
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.141 3.859
3 N -0.590 5.590
4 C -0.255 4.255
5 H 0.069 0.931
6 C -0.035 4.035
7 N -0.917 5.917
8 Si 0.952 3.048
9 H -0.264 1.264
10 H -0.294 1.294
11 H -0.306 1.306
12 C 0.186 3.814
13 H 0.077 0.923
14 C -0.134 4.134
15 C 0.113 3.887
16 N -0.690 5.690
17 C 0.509 3.491
18 O -0.580 6.580
19 C 0.071 3.929
20 H 0.123 0.877
21 C -0.167 4.167
22 O -0.312 6.312
23 C 0.073 3.927
24 C -0.189 4.189
25 C -0.081 4.081
26 C -0.123 4.123
27 C -0.115 4.115
28 C 0.029 3.971
29 F -0.155 7.155
30 H 0.039 0.961
31 H 0.056 0.944
32 H 0.031 0.969
33 H 0.045 0.955
34 H 0.043 0.957
35 H 0.246 0.754
36 H 0.039 0.961
37 H 0.051 0.949
38 H 0.042 0.958
39 H 0.052 0.948
40 H 0.054 0.946
41 H 0.415 0.585
42 H 0.096 0.904
43 H 0.060 0.940
44 H 0.096 0.904
45 H 0.156 0.844
46 H 0.167 0.833
47 H 0.170 0.830
48 H 0.161 0.839
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.649 -6.487 3.970 19.218
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C 0.016 3.984
3 N -0.312 5.312
4 C -0.385 4.385
5 H 0.086 0.914
6 C -0.232 4.232
7 N -0.562 5.562
8 Si 0.782 3.218
9 H -0.188 1.188
10 H -0.221 1.221
11 H -0.234 1.234
12 C 0.079 3.921
13 H 0.095 0.905
14 C -0.193 4.193
15 C -0.012 4.012
16 N -0.341 5.341
17 C 0.294 3.706
18 O -0.460 6.460
19 C 0.012 3.988
20 H 0.140 0.860
21 C -0.224 4.224
22 O -0.225 6.225
23 C 0.027 3.973
24 C -0.207 4.207
25 C -0.099 4.099
26 C -0.141 4.141
27 C -0.134 4.134
28 C 0.009 3.991
29 F -0.134 7.134
30 H 0.058 0.942
31 H 0.075 0.925
32 H 0.050 0.950
33 H 0.064 0.936
34 H 0.062 0.938
35 H 0.056 0.944
36 H 0.058 0.942
37 H 0.070 0.930
38 H 0.061 0.939
39 H 0.070 0.930
40 H 0.072 0.928
41 H 0.253 0.747
42 H 0.115 0.885
43 H 0.079 0.921
44 H 0.114 0.886
45 H 0.174 0.826
46 H 0.184 0.816
47 H 0.187 0.813
48 H 0.178 0.822
Dipole moment (debyes) X Y Z Total
from point charges 17.527 -6.807 2.971 19.036
hybrid contribution -0.663 0.882 0.488 1.206
sum 16.864 -5.926 3.459 18.206
Atomic orbital electron populations
1.22272 0.99274 0.99729 1.00474 1.20876 0.92266 0.86488 0.98803
1.44103 1.74082 1.10333 1.02655 1.19387 1.41208 0.89733 0.88205
0.91368 1.25665 0.99395 0.99016 0.99103 1.70134 1.45172 1.08452
1.32458 0.85446 0.76954 0.78917 0.80463 1.18808 1.22060 1.23404
1.20330 0.91253 0.95508 0.85020 0.90517 1.21978 0.99599 0.99624
0.98110 1.21919 0.86872 0.99975 0.92441 1.45730 1.16691 1.52735
1.18979 1.20571 0.84237 0.78297 0.87455 1.90683 1.81430 1.51280
1.22595 1.22328 0.85613 0.98990 0.91849 0.85996 1.22307 1.04184
1.00440 0.95477 1.86224 1.13088 1.67500 1.55704 1.19453 0.83492
0.99120 0.95231 1.21555 1.00881 1.02726 0.95551 1.21506 0.90622
0.97316 1.00444 1.21408 1.01384 0.97513 0.93750 1.21363 0.93510
1.00124 0.98360 1.17615 0.93596 1.02198 0.85671 1.91449 1.95852
1.78017 1.48045 0.94169 0.92512 0.95025 0.93644 0.93833 0.94445
0.94178 0.92974 0.93930 0.93007 0.92785 0.74710 0.88517 0.92113
0.88552 0.82634 0.81566 0.81257 0.82171
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.76 10.02 71.98 0.72 -5.04 16
2 C 0.14 5.27 5.72 86.38 0.49 5.76 16
3 N -0.59 -24.77 1.83 -678.03 -1.24 -26.01 16
4 C -0.26 -11.78 9.49 84.03 0.80 -10.98 16
5 H 0.07 3.10 7.88 -2.91 -0.02 3.08 16
6 C -0.03 -1.69 4.91 84.86 0.42 -1.27 16
7 N -0.92 -47.48 10.12 21.65 0.22 -47.26 16
8 Si 0.95 39.76 29.58 68.60 2.03 41.79 16
9 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16
10 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16
11 H -0.31 -13.50 7.11 99.48 0.71 -12.79 16
12 C 0.19 7.68 1.92 44.99 0.09 7.77 16
13 H 0.08 3.64 5.97 -2.39 -0.01 3.63 16
14 C -0.13 -5.42 8.24 71.98 0.59 -4.82 16
15 C 0.11 4.23 4.86 86.38 0.42 4.65 16
16 N -0.69 -23.46 5.35 -463.08 -2.48 -25.94 16
17 C 0.51 17.89 7.18 87.66 0.63 18.52 16
18 O -0.58 -25.67 16.51 15.97 0.26 -25.40 16
19 C 0.07 1.93 2.63 29.85 0.08 2.01 16
20 H 0.12 2.62 6.34 -2.39 -0.02 2.61 16
21 C -0.17 -3.60 9.12 71.98 0.66 -2.95 16
22 O -0.31 -10.05 9.20 -74.11 -0.68 -10.73 16
23 C 0.07 1.91 6.61 22.53 0.15 2.05 16
24 C -0.19 -3.41 8.24 22.36 0.18 -3.23 16
25 C -0.08 -1.01 10.04 22.26 0.22 -0.79 16
26 C -0.12 -1.45 10.04 22.28 0.22 -1.23 16
27 C -0.12 -1.97 10.02 22.30 0.22 -1.74 16
28 C 0.03 0.75 7.31 22.45 0.16 0.91 16
29 F -0.15 -4.91 17.11 44.97 0.77 -4.14 16
30 H 0.04 1.52 6.05 -2.39 -0.01 1.51 16
31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16
32 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16
33 H 0.05 1.63 6.36 -2.39 -0.02 1.61 16
34 H 0.04 1.56 8.09 -2.38 -0.02 1.54 16
35 H 0.25 12.70 8.31 -92.71 -0.77 11.93 16
36 H 0.04 1.50 6.52 -2.39 -0.02 1.49 16
37 H 0.05 2.43 7.17 -2.39 -0.02 2.41 16
38 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16
39 H 0.05 1.98 6.76 -2.39 -0.02 1.96 16
40 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16
41 H 0.42 13.50 7.85 -92.71 -0.73 12.77 16
42 H 0.10 1.94 7.92 -2.39 -0.02 1.92 16
43 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16
44 H 0.10 1.61 6.88 -2.38 -0.02 1.59 16
45 H 0.16 2.24 5.41 -2.91 -0.02 2.23 16
46 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16
47 H 0.17 0.79 8.06 -2.91 -0.02 0.77 16
48 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16
Total: -1.00 -65.37 389.77 5.19 -60.18
By element:
Atomic # 1 Polarization: 27.63 SS G_CDS: 0.25 Total: 27.88 kcal
Atomic # 6 Polarization: 3.57 SS G_CDS: 6.06 Total: 9.63 kcal
Atomic # 7 Polarization: -95.71 SS G_CDS: -3.50 Total: -99.21 kcal
Atomic # 8 Polarization: -35.71 SS G_CDS: -0.42 Total: -36.13 kcal
Atomic # 9 Polarization: -4.91 SS G_CDS: 0.77 Total: -4.14 kcal
Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.79 kcal
Total: -65.37 5.19 -60.18 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001153548940.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.856 kcal
(2) G-P(sol) polarization free energy of solvation -65.370 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.226 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.192 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.178 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.034 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds