Wall clock time and date at job start Tue Mar 31 2020 21:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46505 * 109.47029 * 2 1 4 4 C 1.36937 * 119.99553 * 274.78607 * 3 2 1 5 5 H 1.07998 * 120.00454 * 36.45336 * 4 3 2 6 6 C 1.38816 * 119.99569 * 216.45707 * 4 3 2 7 7 N 1.31615 * 120.00218 * 10.46813 * 6 4 3 8 8 Si 1.86807 * 119.99861 * 190.47468 * 6 4 3 9 9 H 1.48501 * 109.47032 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47001 * 119.99444 * 8 6 4 11 11 H 1.48500 * 109.46713 * 239.99871 * 8 6 4 12 12 C 1.46503 * 120.00207 * 94.51318 * 3 2 1 13 13 H 1.08991 * 109.46954 * 178.30384 * 12 3 2 14 14 C 1.52997 * 109.47177 * 58.29916 * 12 3 2 15 15 C 1.52998 * 109.46786 * 298.30213 * 12 3 2 16 16 N 1.46500 * 109.47210 * 304.99812 * 15 12 3 17 17 C 1.34774 * 120.00256 * 180.02562 * 16 15 12 18 18 O 1.21286 * 119.99817 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00517 * 180.02562 * 17 16 15 20 20 H 1.09007 * 109.46944 * 59.99739 * 19 17 16 21 21 C 1.53004 * 109.46885 * 300.00289 * 19 17 16 22 22 O 1.42896 * 109.47628 * 180.02562 * 19 17 16 23 23 C 1.35959 * 117.00242 * 203.42980 * 22 19 17 24 24 C 1.38660 * 120.05913 * 2.54015 * 23 22 19 25 25 C 1.38183 * 119.96234 * 179.72198 * 24 23 22 26 26 C 1.38261 * 120.09824 * 0.54745 * 25 24 23 27 27 C 1.38247 * 120.12589 * 359.72616 * 26 25 24 28 28 C 1.38335 * 120.03026 * 359.97438 * 27 26 25 29 29 F 1.35099 * 120.04617 * 180.02562 * 28 27 26 30 30 H 1.09002 * 109.47643 * 300.00670 * 1 2 3 31 31 H 1.09005 * 109.47099 * 60.00533 * 1 2 3 32 32 H 1.09004 * 109.47340 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47423 * 239.99942 * 2 1 3 34 34 H 1.09005 * 109.47099 * 119.99467 * 2 1 3 35 35 H 0.96997 * 119.99930 * 180.02562 * 7 6 4 36 36 H 1.08995 * 109.47078 * 179.97438 * 14 12 3 37 37 H 1.09001 * 109.47287 * 300.00532 * 14 12 3 38 38 H 1.09000 * 109.47178 * 60.00069 * 14 12 3 39 39 H 1.08999 * 109.47352 * 64.99808 * 15 12 3 40 40 H 1.08998 * 109.47138 * 185.00214 * 15 12 3 41 41 H 0.97002 * 120.00305 * 0.02562 * 16 15 12 42 42 H 1.08998 * 109.47061 * 299.99401 * 21 19 17 43 43 H 1.09000 * 109.47018 * 59.99626 * 21 19 17 44 44 H 1.09006 * 109.47167 * 179.97438 * 21 19 17 45 45 H 1.08001 * 120.01865 * 359.97036 * 24 23 22 46 46 H 1.08003 * 119.95007 * 180.27269 * 25 24 23 47 47 H 1.07998 * 119.93490 * 179.74569 * 26 25 24 48 48 H 1.08001 * 119.98953 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1532 2.0597 -1.1818 5 1 1.4375 1.9080 -1.9763 6 6 3.2099 2.9423 -1.3586 7 7 4.1920 2.9769 -0.4832 8 14 3.2378 4.0812 -2.8391 9 1 2.0270 3.8474 -3.6664 10 1 3.2576 5.4925 -2.3777 11 1 4.4514 3.8085 -3.6505 12 6 2.3566 2.0387 1.2648 13 1 2.7274 3.0437 1.0640 14 6 3.4372 1.2309 1.9864 15 6 1.1086 2.1221 2.1459 16 7 0.0342 2.7917 1.4086 17 6 -1.1671 2.9791 1.9902 18 8 -1.3585 2.5938 3.1242 19 6 -2.2725 3.6673 1.2317 20 1 -2.5022 3.0998 0.3298 21 6 -1.8244 5.0785 0.8459 22 8 -3.4377 3.7464 2.0550 23 6 -4.6340 3.8716 1.4213 24 6 -4.6902 3.8644 0.0358 25 6 -5.9078 3.9860 -0.6062 26 6 -7.0692 4.1263 0.1307 27 6 -7.0171 4.1397 1.5121 28 6 -5.8017 4.0121 2.1604 29 9 -5.7505 4.0247 3.5103 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 4.9302 3.5940 -0.6066 36 1 3.6892 1.7202 2.9271 37 1 3.0663 0.2258 2.1871 38 1 4.3263 1.1714 1.3587 39 1 0.7893 1.1166 2.4199 40 1 1.3380 2.6890 3.0481 41 1 0.1873 3.1002 0.5018 42 1 -1.5947 5.6460 1.7478 43 1 -0.9355 5.0185 0.2181 44 1 -2.6238 5.5762 0.2969 45 1 -3.7832 3.7597 -0.5411 46 1 -5.9517 3.9759 -1.6853 47 1 -8.0189 4.2253 -0.3739 48 1 -7.9257 4.2498 2.0855 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153548941.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:25 Heat of formation + Delta-G solvation = -71.262721 kcal Electronic energy + Delta-G solvation = -30518.363518 eV Core-core repulsion = 26296.162249 eV Total energy + Delta-G solvation = -4222.201269 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.83288 -40.59098 -39.15719 -37.58680 -36.78279 -33.82707 -32.33062 -31.89956 -30.95878 -30.79525 -29.70562 -28.23454 -25.91304 -24.50505 -23.99423 -22.98925 -22.42633 -21.70700 -19.85975 -19.29419 -18.74323 -17.53518 -17.11159 -16.85317 -16.23827 -16.03380 -15.64944 -15.36336 -15.06767 -14.82988 -14.64646 -14.51654 -14.10913 -13.82036 -13.46390 -13.18952 -13.03870 -12.74210 -12.65093 -12.47396 -12.36694 -12.15821 -12.07239 -11.88473 -11.78265 -11.57611 -11.38273 -11.10879 -11.01427 -10.99685 -10.90605 -10.71888 -10.32990 -10.14246 -9.68409 -9.50551 -9.43192 -9.16616 -8.60846 -8.48617 -8.36909 -6.67559 -5.94562 -3.50130 0.88478 1.03461 2.61054 2.89828 3.23648 3.32961 3.34391 3.34513 3.76952 4.08217 4.33781 4.49155 4.56844 4.65101 4.82327 4.95893 4.97630 4.99323 5.22168 5.23415 5.33958 5.50813 5.52508 5.74974 5.81521 5.86291 5.93553 5.98653 6.00447 6.13487 6.14223 6.20938 6.33276 6.41448 6.44351 6.50383 6.57978 6.63849 6.79310 6.86423 6.96460 7.10355 7.12887 7.44824 7.54309 7.68466 8.02455 8.39183 8.60676 9.10397 9.69622 10.28559 11.11296 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014009 B = 0.003193 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.253094 B = 8766.713340 C = 9634.738015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.140 3.860 3 N -0.583 5.583 4 C -0.265 4.265 5 H 0.063 0.937 6 C 0.014 3.986 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.289 1.289 12 C 0.175 3.825 13 H 0.105 0.895 14 C -0.143 4.143 15 C 0.102 3.898 16 N -0.693 5.693 17 C 0.511 3.489 18 O -0.535 6.535 19 C 0.064 3.936 20 H 0.100 0.900 21 C -0.176 4.176 22 O -0.276 6.276 23 C 0.105 3.895 24 C -0.187 4.187 25 C -0.087 4.087 26 C -0.135 4.135 27 C -0.117 4.117 28 C 0.067 3.933 29 F -0.131 7.131 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.033 0.967 33 H 0.042 0.958 34 H 0.037 0.963 35 H 0.255 0.745 36 H 0.034 0.966 37 H 0.030 0.970 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.412 0.588 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.072 0.928 45 H 0.142 0.858 46 H 0.132 0.868 47 H 0.133 0.867 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.438 3.015 -0.370 16.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.013 3.987 3 N -0.305 5.305 4 C -0.395 4.395 5 H 0.081 0.919 6 C -0.186 4.186 7 N -0.534 5.534 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.216 1.216 12 C 0.067 3.933 13 H 0.123 0.877 14 C -0.202 4.202 15 C -0.023 4.023 16 N -0.346 5.346 17 C 0.294 3.706 18 O -0.412 6.412 19 C 0.004 3.996 20 H 0.118 0.882 21 C -0.234 4.234 22 O -0.188 6.188 23 C 0.058 3.942 24 C -0.206 4.206 25 C -0.106 4.106 26 C -0.153 4.153 27 C -0.136 4.136 28 C 0.047 3.953 29 F -0.110 7.110 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.249 0.751 42 H 0.093 0.907 43 H 0.106 0.894 44 H 0.090 0.910 45 H 0.159 0.841 46 H 0.150 0.850 47 H 0.151 0.849 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.319 2.817 0.701 16.576 hybrid contribution 0.246 0.695 -1.218 1.424 sum -16.073 3.512 -0.517 16.460 Atomic orbital electron populations 1.22461 1.00192 0.99092 1.01297 1.20774 0.91513 0.87537 0.98834 1.43853 1.76421 1.08143 1.02040 1.19120 1.06124 1.20838 0.93368 0.91941 1.25290 0.94759 1.01158 0.97414 1.69939 1.09384 1.37909 1.36129 0.86317 0.77710 0.80538 0.82717 1.20198 1.21525 1.21578 1.20552 0.88740 0.99702 0.84276 0.87722 1.21991 1.01165 0.98035 0.99041 1.22258 0.88855 0.95959 0.95210 1.45836 1.10745 1.58819 1.19179 1.19852 0.83444 0.80217 0.87059 1.90712 1.81645 1.50620 1.18198 1.22342 0.84508 0.98593 0.94118 0.88243 1.22341 1.03115 0.94568 1.03377 1.86291 1.11397 1.87010 1.34142 1.19128 0.85528 0.98050 0.91529 1.21290 1.00231 1.06820 0.92266 1.21034 0.91520 0.97588 1.00414 1.20913 0.98938 1.02688 0.92767 1.21018 0.95824 1.01295 0.95465 1.17017 0.92122 1.08872 0.77253 1.91520 1.97086 1.94215 1.28130 0.93117 0.93557 0.94772 0.93995 0.94455 0.93479 0.94725 0.95088 0.90502 0.92709 0.92801 0.75138 0.90660 0.89428 0.90951 0.84062 0.84964 0.84929 0.84155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 9.87 37.16 0.37 -2.61 16 2 C 0.14 2.72 5.75 -4.04 -0.02 2.70 16 3 N -0.58 -12.53 1.87 -165.66 -0.31 -12.84 16 4 C -0.26 -6.24 9.14 -15.06 -0.14 -6.38 16 5 H 0.06 1.48 7.85 -52.49 -0.41 1.07 16 6 C 0.01 0.34 5.01 -17.43 -0.09 0.26 16 7 N -0.89 -22.77 10.54 55.49 0.59 -22.19 16 8 Si 0.90 19.40 29.57 -169.99 -5.03 14.37 16 9 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 10 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.17 3.60 1.92 -67.93 -0.13 3.47 16 13 H 0.11 2.45 5.97 -51.93 -0.31 2.14 16 14 C -0.14 -2.84 9.03 37.16 0.34 -2.51 16 15 C 0.10 1.92 4.34 -4.04 -0.02 1.90 16 16 N -0.69 -12.05 4.04 -60.30 -0.24 -12.30 16 17 C 0.51 9.05 7.10 -10.99 -0.08 8.97 16 18 O -0.53 -11.59 16.50 -14.36 -0.24 -11.83 16 19 C 0.06 0.91 2.66 -27.88 -0.07 0.84 16 20 H 0.10 1.21 6.02 -51.92 -0.31 0.90 16 21 C -0.18 -2.09 9.15 37.16 0.34 -1.75 16 22 O -0.28 -4.45 9.20 -39.52 -0.36 -4.82 16 23 C 0.10 1.42 6.56 -39.18 -0.26 1.16 16 24 C -0.19 -1.99 8.33 -39.45 -0.33 -2.32 16 25 C -0.09 -0.75 10.04 -39.59 -0.40 -1.14 16 26 C -0.13 -1.09 10.04 -39.57 -0.40 -1.49 16 27 C -0.12 -1.13 10.02 -39.54 -0.40 -1.53 16 28 C 0.07 0.88 7.31 -39.30 -0.29 0.59 16 29 F -0.13 -1.98 17.11 2.25 0.04 -1.94 16 30 H 0.05 0.92 5.06 -51.93 -0.26 0.65 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 34 H 0.04 0.71 6.34 -51.93 -0.33 0.38 16 35 H 0.25 6.43 8.31 -40.82 -0.34 6.09 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.03 0.57 6.60 -51.93 -0.34 0.23 16 38 H 0.08 1.73 7.54 -51.93 -0.39 1.34 16 39 H 0.05 1.06 6.90 -51.93 -0.36 0.71 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.41 7.06 7.20 -40.82 -0.29 6.77 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.09 0.98 7.56 -51.93 -0.39 0.59 16 44 H 0.07 0.72 7.31 -51.93 -0.38 0.35 16 45 H 0.14 1.31 5.66 -52.49 -0.30 1.02 16 46 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 47 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 48 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 387.72 15.07 5.84 5.84 Total: -1.00 -28.96 387.72 -8.30 -37.26 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -7.02 Total: 8.26 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -1.57 Total: 0.17 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.03 Total: -47.32 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.60 Total: -16.64 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -28.96 -8.30 -37.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153548941.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.003 kcal (2) G-P(sol) polarization free energy of solvation -28.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds