Wall clock time and date at job start Tue Mar 31 2020 21:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47604 * 2 1 4 4 C 1.36943 * 119.99846 * 84.27292 * 3 2 1 5 5 H 1.07999 * 119.99904 * 28.84108 * 4 3 2 6 6 C 1.38809 * 119.99706 * 209.11638 * 4 3 2 7 7 N 1.31618 * 120.00334 * 18.63280 * 6 4 3 8 8 Si 1.86797 * 119.99733 * 198.63168 * 6 4 3 9 9 H 1.48503 * 109.47368 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47160 * 120.00179 * 8 6 4 11 11 H 1.48498 * 109.47041 * 239.99906 * 8 6 4 12 12 C 1.46498 * 120.00095 * 264.27653 * 3 2 1 13 13 H 1.09003 * 109.46860 * 183.52441 * 12 3 2 14 14 C 1.52998 * 109.47430 * 63.52157 * 12 3 2 15 15 C 1.52998 * 109.46760 * 303.51820 * 12 3 2 16 16 N 1.46499 * 109.47758 * 305.00230 * 15 12 3 17 17 C 1.34770 * 120.00144 * 180.02562 * 16 15 12 18 18 O 1.21283 * 120.00169 * 359.97438 * 17 16 15 19 19 C 1.50705 * 120.00193 * 179.97438 * 17 16 15 20 20 C 1.52999 * 109.47318 * 179.97438 * 19 17 16 21 21 O 1.42902 * 109.46636 * 179.97438 * 20 19 17 22 22 C 1.35899 * 116.99524 * 180.02562 * 21 20 19 23 23 C 1.38773 * 120.04522 * 359.72545 * 22 21 20 24 24 C 1.38131 * 119.99362 * 179.74349 * 23 22 21 25 25 C 1.38247 * 120.08373 * 0.53415 * 24 23 22 26 26 C 1.38481 * 120.08109 * 359.74171 * 25 24 23 27 27 F 1.35105 * 119.99332 * 180.02562 * 26 25 24 28 28 C 1.38380 * 120.00683 * 359.97438 * 26 25 24 29 29 H 1.09000 * 109.47166 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46770 * 299.99864 * 1 2 3 31 31 H 1.08999 * 109.47057 * 59.99877 * 1 2 3 32 32 H 1.09001 * 109.47350 * 239.99686 * 2 1 3 33 33 H 1.09001 * 109.46755 * 120.00568 * 2 1 3 34 34 H 0.96997 * 119.99939 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.46874 * 300.00271 * 14 12 3 36 36 H 1.08999 * 109.46541 * 59.99998 * 14 12 3 37 37 H 1.08996 * 109.46887 * 180.02562 * 14 12 3 38 38 H 1.09004 * 109.46866 * 65.00698 * 15 12 3 39 39 H 1.09006 * 109.47115 * 184.99975 * 15 12 3 40 40 H 0.97000 * 119.99579 * 359.97438 * 16 15 12 41 41 H 1.08993 * 109.46870 * 300.00053 * 19 17 16 42 42 H 1.09006 * 109.46963 * 59.99667 * 19 17 16 43 43 H 1.08993 * 109.47375 * 299.99966 * 20 19 17 44 44 H 1.08994 * 109.46864 * 60.00281 * 20 19 17 45 45 H 1.08001 * 119.99774 * 359.97438 * 23 22 21 46 46 H 1.08004 * 119.96010 * 180.27556 * 24 23 22 47 47 H 1.08001 * 119.95967 * 179.76329 * 25 24 23 48 48 H 1.07995 * 120.04066 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1351 2.0661 1.1801 5 1 2.3293 1.5312 2.0980 6 6 1.9982 3.4473 1.1972 7 7 1.4075 4.0626 0.1948 8 14 2.6522 4.4327 2.6431 9 1 3.2675 3.5116 3.6322 10 1 3.6735 5.3980 2.1628 11 1 1.5352 5.1720 3.2840 12 6 2.3819 2.0295 -1.2624 13 1 2.7793 3.0239 -1.0588 14 6 1.1418 2.1479 -2.1506 15 6 3.4441 1.1927 -1.9781 16 7 4.5832 0.9789 -1.0820 17 6 5.6458 0.2641 -1.5016 18 8 5.6590 -0.2027 -2.6210 19 6 6.8178 0.0446 -0.5800 20 6 7.8799 -0.7924 -1.2958 21 8 8.9914 -0.9999 -0.4220 22 6 10.0300 -1.7294 -0.9076 23 6 9.9777 -2.2401 -2.1969 24 6 11.0362 -2.9770 -2.6913 25 6 12.1438 -3.2162 -1.8993 26 6 12.1971 -2.7131 -0.6102 27 9 13.2806 -2.9475 0.1621 28 6 11.1412 -1.9694 -0.1134 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.3122 5.0279 0.2067 35 1 0.7445 1.1534 -2.3541 36 1 0.3853 2.7441 -1.6406 37 1 1.4125 2.6299 -3.0900 38 1 3.0183 0.2298 -2.2607 39 1 3.7790 1.7183 -2.8724 40 1 4.5728 1.3525 -0.1869 41 1 7.2432 1.0076 -0.2976 42 1 6.4833 -0.4811 0.3144 43 1 7.4543 -1.7553 -1.5779 44 1 8.2144 -0.2670 -2.1902 45 1 9.1109 -2.0581 -2.8150 46 1 10.9968 -3.3704 -3.6963 47 1 12.9687 -3.7959 -2.2865 48 1 11.1823 -1.5764 0.8917 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153699550.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:59 Heat of formation + Delta-G solvation = -82.166202 kcal Electronic energy + Delta-G solvation = -28875.792963 eV Core-core repulsion = 24653.118884 eV Total energy + Delta-G solvation = -4222.674079 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.21074 -40.43105 -39.36365 -37.57050 -36.96210 -33.84891 -32.41936 -31.91042 -31.08470 -30.64077 -29.80337 -28.37072 -26.08240 -24.29959 -23.81418 -23.17486 -21.96212 -21.65097 -19.92279 -19.31105 -18.86894 -17.15125 -16.91080 -16.68959 -16.57923 -16.43366 -15.86143 -15.84395 -15.53252 -15.01375 -14.63613 -14.55168 -14.31039 -14.06562 -13.65208 -13.28398 -13.12174 -12.98759 -12.71450 -12.45354 -12.37430 -12.05269 -11.92204 -11.86516 -11.60917 -11.46923 -11.34511 -11.20717 -11.07889 -10.93416 -10.86332 -10.53644 -10.32118 -9.96521 -9.65252 -9.59118 -9.55073 -9.21196 -8.61306 -8.59734 -8.50459 -6.79916 -5.92505 -3.36205 0.80728 0.97015 2.62871 2.89939 3.27280 3.27848 3.38451 3.38658 3.75776 4.08332 4.38739 4.39949 4.66057 4.66660 4.72654 4.82594 4.98935 5.04149 5.12052 5.23401 5.31790 5.40077 5.60529 5.61958 5.67059 5.75364 5.84237 5.91279 6.01367 6.05062 6.09517 6.27048 6.39539 6.39936 6.45120 6.50670 6.65241 6.68178 6.73733 6.92246 6.97996 7.05669 7.22449 7.46301 7.56166 7.73330 8.00421 8.35005 8.57428 9.10663 9.73044 10.27364 11.14546 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015667 B = 0.002155 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.765228 B =12988.604260 C =13976.041392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.142 3.858 3 N -0.584 5.584 4 C -0.259 4.259 5 H 0.067 0.933 6 C 0.007 3.993 7 N -0.892 5.892 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.291 1.291 12 C 0.177 3.823 13 H 0.103 0.897 14 C -0.144 4.144 15 C 0.101 3.899 16 N -0.698 5.698 17 C 0.512 3.488 18 O -0.563 6.563 19 C -0.142 4.142 20 C 0.077 3.923 21 O -0.312 6.312 22 C 0.167 3.833 23 C -0.218 4.218 24 C -0.050 4.050 25 C -0.196 4.196 26 C 0.136 3.864 27 F -0.136 7.136 28 C -0.193 4.193 29 H 0.027 0.973 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.254 0.746 35 H 0.029 0.971 36 H 0.080 0.920 37 H 0.029 0.971 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.413 0.587 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.140 0.860 46 H 0.136 0.864 47 H 0.135 0.865 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.280 -10.716 -4.371 19.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.016 3.984 3 N -0.305 5.305 4 C -0.388 4.388 5 H 0.085 0.915 6 C -0.193 4.193 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.216 1.216 11 H -0.218 1.218 12 C 0.069 3.931 13 H 0.121 0.879 14 C -0.203 4.203 15 C -0.024 4.024 16 N -0.348 5.348 17 C 0.297 3.703 18 O -0.444 6.444 19 C -0.182 4.182 20 C 0.001 3.999 21 O -0.225 6.225 22 C 0.120 3.880 23 C -0.237 4.237 24 C -0.068 4.068 25 C -0.215 4.215 26 C 0.117 3.883 27 F -0.114 7.114 28 C -0.212 4.212 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.048 0.952 36 H 0.099 0.901 37 H 0.048 0.952 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.250 0.750 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.157 0.843 46 H 0.154 0.846 47 H 0.153 0.847 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 15.229 -10.769 -4.936 19.294 hybrid contribution 0.158 0.764 1.132 1.375 sum 15.387 -10.005 -3.804 18.744 Atomic orbital electron populations 1.22396 0.99784 0.98381 1.02107 1.20795 0.91949 0.87606 0.98083 1.44035 1.73790 1.09738 1.02966 1.19195 1.43109 0.89218 0.87306 0.91516 1.25054 0.98894 0.97900 0.97407 1.70021 1.42777 1.08526 1.32241 0.86329 0.78491 0.80219 0.82339 1.20231 1.21574 1.21827 1.20525 0.90950 0.96637 0.84971 0.87915 1.22125 1.00588 0.99560 0.98018 1.22148 0.87102 1.00553 0.92625 1.45922 1.17185 1.52605 1.19125 1.20119 0.83807 0.78816 0.87532 1.90669 1.81442 1.51218 1.21050 1.21472 0.93915 1.02797 1.00019 1.22530 0.84329 1.00769 0.92227 1.86007 1.26339 1.67409 1.42738 1.18598 0.87375 0.90358 0.91645 1.21479 1.01950 1.04368 0.95910 1.20811 0.91539 0.95040 0.99412 1.21045 1.01257 1.05842 0.93395 1.17278 0.83795 0.97913 0.89346 1.91516 1.52429 1.92694 1.74807 1.20263 0.92944 1.05726 1.02304 0.95347 0.92896 0.93154 0.94466 0.94560 0.93626 0.95169 0.90068 0.95169 0.92780 0.92675 0.75040 0.87782 0.87667 0.90763 0.90799 0.84272 0.84612 0.84690 0.83864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 10.02 37.16 0.37 -2.76 16 2 C 0.14 2.74 5.73 -4.04 -0.02 2.71 16 3 N -0.58 -12.49 1.84 -165.67 -0.30 -12.79 16 4 C -0.26 -6.17 9.50 -15.06 -0.14 -6.32 16 5 H 0.07 1.61 7.90 -52.49 -0.41 1.20 16 6 C 0.01 0.17 4.84 -17.43 -0.08 0.09 16 7 N -0.89 -23.00 10.24 55.49 0.57 -22.43 16 8 Si 0.90 19.82 29.59 -169.99 -5.03 14.79 16 9 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.18 3.61 1.93 -67.93 -0.13 3.48 16 13 H 0.10 2.41 5.93 -51.93 -0.31 2.10 16 14 C -0.14 -2.86 8.25 37.16 0.31 -2.56 16 15 C 0.10 1.83 4.85 -4.04 -0.02 1.81 16 16 N -0.70 -11.54 5.39 -60.29 -0.32 -11.87 16 17 C 0.51 7.89 7.83 -10.99 -0.09 7.80 16 18 O -0.56 -10.23 15.98 5.56 0.09 -10.15 16 19 C -0.14 -1.66 6.07 -27.88 -0.17 -1.83 16 20 C 0.08 0.87 4.03 37.16 0.15 1.02 16 21 O -0.31 -3.64 10.14 -19.42 -0.20 -3.83 16 22 C 0.17 1.82 6.69 -39.22 -0.26 1.56 16 23 C -0.22 -2.09 9.04 -39.42 -0.36 -2.45 16 24 C -0.05 -0.40 10.04 -39.62 -0.40 -0.80 16 25 C -0.20 -1.66 10.02 -39.49 -0.40 -2.06 16 26 C 0.14 1.36 7.30 -39.44 -0.29 1.07 16 27 F -0.14 -1.42 17.27 2.25 0.04 -1.38 16 28 C -0.19 -2.01 9.97 -39.37 -0.39 -2.40 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.05 0.97 6.03 -51.93 -0.31 0.66 16 32 H 0.04 0.68 6.35 -51.93 -0.33 0.35 16 33 H 0.04 0.69 8.09 -51.93 -0.42 0.27 16 34 H 0.25 6.46 8.31 -40.82 -0.34 6.12 16 35 H 0.03 0.56 6.50 -51.93 -0.34 0.22 16 36 H 0.08 1.86 7.22 -51.93 -0.37 1.49 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 1.00 6.76 -51.93 -0.35 0.65 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.41 6.91 8.08 -40.82 -0.33 6.58 16 41 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.07 0.84 7.61 -51.93 -0.40 0.44 16 44 H 0.07 0.83 7.63 -51.93 -0.40 0.43 16 45 H 0.14 1.24 6.30 -52.49 -0.33 0.91 16 46 H 0.14 0.75 8.06 -52.48 -0.42 0.32 16 47 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 48 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 393.59 15.07 5.93 5.93 Total: -1.00 -27.07 393.59 -8.39 -35.46 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -7.24 Total: 7.91 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -1.92 Total: -1.64 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: -0.06 Total: -47.08 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.11 Total: -13.98 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.79 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -27.07 -8.39 -35.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153699550.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.709 kcal (2) G-P(sol) polarization free energy of solvation -27.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds