Wall clock time and date at job start Tue Mar 31 2020 21:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47604 * 2 1 4 4 C 1.36943 * 119.99846 * 84.27292 * 3 2 1 5 5 H 1.07999 * 119.99904 * 28.84108 * 4 3 2 6 6 C 1.38809 * 119.99706 * 209.11638 * 4 3 2 7 7 N 1.31618 * 120.00334 * 18.63280 * 6 4 3 8 8 Si 1.86797 * 119.99733 * 198.63168 * 6 4 3 9 9 H 1.48503 * 109.47368 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47160 * 120.00179 * 8 6 4 11 11 H 1.48498 * 109.47041 * 239.99906 * 8 6 4 12 12 C 1.46498 * 120.00095 * 264.27653 * 3 2 1 13 13 H 1.09003 * 109.46860 * 183.52441 * 12 3 2 14 14 C 1.52998 * 109.47430 * 63.52157 * 12 3 2 15 15 C 1.52998 * 109.46760 * 303.51820 * 12 3 2 16 16 N 1.46499 * 109.47758 * 305.00230 * 15 12 3 17 17 C 1.34770 * 120.00144 * 180.02562 * 16 15 12 18 18 O 1.21283 * 120.00169 * 359.97438 * 17 16 15 19 19 C 1.50705 * 120.00193 * 179.97438 * 17 16 15 20 20 C 1.52999 * 109.47318 * 179.97438 * 19 17 16 21 21 O 1.42902 * 109.46636 * 179.97438 * 20 19 17 22 22 C 1.35899 * 116.99524 * 180.02562 * 21 20 19 23 23 C 1.38773 * 120.04522 * 359.72545 * 22 21 20 24 24 C 1.38131 * 119.99362 * 179.74349 * 23 22 21 25 25 C 1.38247 * 120.08373 * 0.53415 * 24 23 22 26 26 C 1.38481 * 120.08109 * 359.74171 * 25 24 23 27 27 F 1.35105 * 119.99332 * 180.02562 * 26 25 24 28 28 C 1.38380 * 120.00683 * 359.97438 * 26 25 24 29 29 H 1.09000 * 109.47166 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46770 * 299.99864 * 1 2 3 31 31 H 1.08999 * 109.47057 * 59.99877 * 1 2 3 32 32 H 1.09001 * 109.47350 * 239.99686 * 2 1 3 33 33 H 1.09001 * 109.46755 * 120.00568 * 2 1 3 34 34 H 0.96997 * 119.99939 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.46874 * 300.00271 * 14 12 3 36 36 H 1.08999 * 109.46541 * 59.99998 * 14 12 3 37 37 H 1.08996 * 109.46887 * 180.02562 * 14 12 3 38 38 H 1.09004 * 109.46866 * 65.00698 * 15 12 3 39 39 H 1.09006 * 109.47115 * 184.99975 * 15 12 3 40 40 H 0.97000 * 119.99579 * 359.97438 * 16 15 12 41 41 H 1.08993 * 109.46870 * 300.00053 * 19 17 16 42 42 H 1.09006 * 109.46963 * 59.99667 * 19 17 16 43 43 H 1.08993 * 109.47375 * 299.99966 * 20 19 17 44 44 H 1.08994 * 109.46864 * 60.00281 * 20 19 17 45 45 H 1.08001 * 119.99774 * 359.97438 * 23 22 21 46 46 H 1.08004 * 119.96010 * 180.27556 * 24 23 22 47 47 H 1.08001 * 119.95967 * 179.76329 * 25 24 23 48 48 H 1.07995 * 120.04066 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1351 2.0661 1.1801 5 1 2.3293 1.5312 2.0980 6 6 1.9982 3.4473 1.1972 7 7 1.4075 4.0626 0.1948 8 14 2.6522 4.4327 2.6431 9 1 3.2675 3.5116 3.6322 10 1 3.6735 5.3980 2.1628 11 1 1.5352 5.1720 3.2840 12 6 2.3819 2.0295 -1.2624 13 1 2.7793 3.0239 -1.0588 14 6 1.1418 2.1479 -2.1506 15 6 3.4441 1.1927 -1.9781 16 7 4.5832 0.9789 -1.0820 17 6 5.6458 0.2641 -1.5016 18 8 5.6590 -0.2027 -2.6210 19 6 6.8178 0.0446 -0.5800 20 6 7.8799 -0.7924 -1.2958 21 8 8.9914 -0.9999 -0.4220 22 6 10.0300 -1.7294 -0.9076 23 6 9.9777 -2.2401 -2.1969 24 6 11.0362 -2.9770 -2.6913 25 6 12.1438 -3.2162 -1.8993 26 6 12.1971 -2.7131 -0.6102 27 9 13.2806 -2.9475 0.1621 28 6 11.1412 -1.9694 -0.1134 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.3122 5.0279 0.2067 35 1 0.7445 1.1534 -2.3541 36 1 0.3853 2.7441 -1.6406 37 1 1.4125 2.6299 -3.0900 38 1 3.0183 0.2298 -2.2607 39 1 3.7790 1.7183 -2.8724 40 1 4.5728 1.3525 -0.1869 41 1 7.2432 1.0076 -0.2976 42 1 6.4833 -0.4811 0.3144 43 1 7.4543 -1.7553 -1.5779 44 1 8.2144 -0.2670 -2.1902 45 1 9.1109 -2.0581 -2.8150 46 1 10.9968 -3.3704 -3.6963 47 1 12.9687 -3.7959 -2.2865 48 1 11.1823 -1.5764 0.8917 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153699550.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:58 Heat of formation + Delta-G solvation = -95.477222 kcal Electronic energy + Delta-G solvation = -28876.370172 eV Core-core repulsion = 24653.118884 eV Total energy + Delta-G solvation = -4223.251288 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.97795 -41.27862 -40.59080 -38.67862 -38.24046 -35.30663 -33.73597 -33.37657 -32.34252 -31.60611 -30.58190 -30.08398 -27.39600 -25.87385 -25.06998 -23.90733 -23.26808 -22.77798 -21.20993 -20.87753 -19.71686 -18.79492 -17.83863 -17.67227 -17.49690 -17.21245 -16.89759 -16.81532 -16.67476 -16.38267 -16.31050 -15.73450 -15.38542 -15.27240 -14.73507 -14.63624 -14.34665 -14.17905 -13.83434 -13.81266 -13.58576 -13.24751 -13.18959 -13.05760 -12.98854 -12.80532 -12.73712 -12.66131 -12.60265 -12.16997 -12.04215 -11.97126 -11.77321 -11.70804 -11.26901 -11.23001 -10.91323 -10.43227 -9.94206 -9.90578 -9.35420 -8.57931 -7.79616 -5.23390 0.08213 0.25650 1.50133 1.56972 1.62926 1.66922 1.72327 2.55953 2.56324 2.62667 3.33260 3.35758 3.61769 3.66456 3.80407 3.93963 3.96313 4.01505 4.10995 4.23383 4.27994 4.39088 4.45436 4.48844 4.55359 4.71805 4.77137 4.77506 4.87403 4.91215 4.92915 4.97876 5.05031 5.06334 5.12345 5.19091 5.20565 5.33017 5.35372 5.54895 5.62200 5.68998 5.77501 5.78753 5.94635 6.25687 6.50283 6.69909 7.25560 7.30228 7.96246 8.45486 9.25223 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015667 B = 0.002155 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.765228 B =12988.604260 C =13976.041392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.141 3.859 3 N -0.590 5.590 4 C -0.253 4.253 5 H 0.065 0.935 6 C -0.036 4.036 7 N -0.916 5.916 8 Si 0.950 3.050 9 H -0.268 1.268 10 H -0.293 1.293 11 H -0.305 1.305 12 C 0.182 3.818 13 H 0.073 0.927 14 C -0.134 4.134 15 C 0.114 3.886 16 N -0.701 5.701 17 C 0.515 3.485 18 O -0.590 6.590 19 C -0.133 4.133 20 C 0.082 3.918 21 O -0.321 6.321 22 C 0.146 3.854 23 C -0.223 4.223 24 C -0.046 4.046 25 C -0.191 4.191 26 C 0.122 3.878 27 F -0.142 7.142 28 C -0.204 4.204 29 H 0.057 0.943 30 H 0.028 0.972 31 H 0.040 0.960 32 H 0.050 0.950 33 H 0.040 0.960 34 H 0.246 0.754 35 H 0.041 0.959 36 H 0.048 0.952 37 H 0.043 0.957 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.413 0.587 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.144 0.856 46 H 0.166 0.834 47 H 0.158 0.842 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.534 -12.295 -4.815 21.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.016 3.984 3 N -0.312 5.312 4 C -0.383 4.383 5 H 0.083 0.917 6 C -0.233 4.233 7 N -0.561 5.561 8 Si 0.780 3.220 9 H -0.192 1.192 10 H -0.220 1.220 11 H -0.233 1.233 12 C 0.075 3.925 13 H 0.091 0.909 14 C -0.193 4.193 15 C -0.011 4.011 16 N -0.351 5.351 17 C 0.302 3.698 18 O -0.472 6.472 19 C -0.173 4.173 20 C 0.007 3.993 21 O -0.235 6.235 22 C 0.100 3.900 23 C -0.242 4.242 24 C -0.064 4.064 25 C -0.210 4.210 26 C 0.103 3.897 27 F -0.120 7.120 28 C -0.223 4.223 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.249 0.751 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.162 0.838 46 H 0.184 0.816 47 H 0.176 0.824 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 16.501 -12.373 -5.370 21.313 hybrid contribution -0.212 1.174 1.238 1.719 sum 16.290 -11.200 -4.132 20.196 Atomic orbital electron populations 1.22281 0.99281 0.99791 1.00432 1.20876 0.92257 0.86411 0.98880 1.44133 1.74113 1.10335 1.02630 1.19346 1.41592 0.89334 0.88035 0.91738 1.25569 0.99761 0.98787 0.99195 1.70155 1.44280 1.08014 1.33653 0.85482 0.77252 0.78905 0.80333 1.19231 1.22035 1.23294 1.20366 0.91636 0.95579 0.84924 0.90885 1.21973 0.99536 0.99673 0.98128 1.21837 0.86990 0.99821 0.92487 1.45906 1.17245 1.53075 1.18854 1.20617 0.84041 0.77610 0.87516 1.90657 1.81956 1.52136 1.22432 1.21403 0.92531 1.03917 0.99435 1.22423 0.84257 1.00579 0.92056 1.85965 1.26592 1.67936 1.42981 1.18771 0.87427 0.91278 0.92493 1.21660 1.02691 1.04373 0.95449 1.21171 0.90591 0.94016 1.00587 1.21363 1.01959 1.05065 0.92594 1.17473 0.83653 0.98516 0.90082 1.91499 1.52628 1.92791 1.75100 1.20360 0.93234 1.06174 1.02561 0.92375 0.95260 0.94046 0.93183 0.94129 0.94432 0.94013 0.93306 0.93773 0.92836 0.92589 0.75076 0.86320 0.86307 0.90885 0.90917 0.83798 0.81612 0.82416 0.83803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.73 10.02 71.98 0.72 -5.00 16 2 C 0.14 5.23 5.73 86.38 0.49 5.73 16 3 N -0.59 -24.91 1.84 -678.05 -1.25 -26.16 16 4 C -0.25 -11.96 9.50 84.03 0.80 -11.17 16 5 H 0.06 3.06 7.90 -2.91 -0.02 3.03 16 6 C -0.04 -1.79 4.84 84.86 0.41 -1.38 16 7 N -0.92 -48.06 10.24 21.65 0.22 -47.84 16 8 Si 0.95 41.02 29.59 68.60 2.03 43.05 16 9 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 10 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 12 C 0.18 7.41 1.93 44.99 0.09 7.50 16 13 H 0.07 3.47 5.93 -2.39 -0.01 3.45 16 14 C -0.13 -5.30 8.25 71.98 0.59 -4.71 16 15 C 0.11 4.02 4.85 86.38 0.42 4.44 16 16 N -0.70 -22.35 5.39 -463.05 -2.49 -24.85 16 17 C 0.51 15.13 7.83 87.66 0.69 15.82 16 18 O -0.59 -20.67 15.98 -3.04 -0.05 -20.72 16 19 C -0.13 -2.89 6.07 29.85 0.18 -2.71 16 20 C 0.08 1.75 4.03 71.98 0.29 2.04 16 21 O -0.32 -7.18 10.14 -92.41 -0.94 -8.12 16 22 C 0.15 3.07 6.69 22.50 0.15 3.22 16 23 C -0.22 -3.92 9.04 22.37 0.20 -3.72 16 24 C -0.05 -0.62 10.04 22.25 0.22 -0.40 16 25 C -0.19 -2.80 10.02 22.33 0.22 -2.58 16 26 C 0.12 2.30 7.30 22.36 0.16 2.46 16 27 F -0.14 -2.83 17.27 44.97 0.78 -2.06 16 28 C -0.20 -4.15 9.97 22.41 0.22 -3.92 16 29 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.04 1.55 6.03 -2.39 -0.01 1.53 16 32 H 0.05 1.73 6.35 -2.39 -0.02 1.72 16 33 H 0.04 1.47 8.09 -2.39 -0.02 1.45 16 34 H 0.25 12.86 8.31 -92.71 -0.77 12.08 16 35 H 0.04 1.52 6.50 -2.39 -0.02 1.50 16 36 H 0.05 2.26 7.22 -2.39 -0.02 2.24 16 37 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.05 1.90 6.76 -2.38 -0.02 1.88 16 39 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 40 H 0.41 13.36 8.08 -92.71 -0.75 12.61 16 41 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.12 2.30 8.14 -2.38 -0.02 2.28 16 43 H 0.07 1.56 7.61 -2.39 -0.02 1.54 16 44 H 0.07 1.55 7.63 -2.39 -0.02 1.53 16 45 H 0.14 2.34 6.30 -2.91 -0.02 2.32 16 46 H 0.17 1.22 8.06 -2.91 -0.02 1.19 16 47 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 48 H 0.14 2.75 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -57.68 393.59 4.39 -53.28 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: 0.22 Total: 27.79 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 5.87 Total: 5.62 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -3.52 Total: -98.84 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.99 Total: -28.84 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.78 Total: -2.06 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -57.68 4.39 -53.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153699550.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.196 kcal (2) G-P(sol) polarization free energy of solvation -57.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds