Wall clock time and date at job start Tue Mar 31 2020 21:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47060 * 2 1 4 4 C 1.36935 * 119.99857 * 84.27635 * 3 2 1 5 5 H 1.08006 * 120.00072 * 28.84540 * 4 3 2 6 6 C 1.38813 * 120.00228 * 209.11332 * 4 3 2 7 7 N 1.31619 * 119.99887 * 18.62832 * 6 4 3 8 8 Si 1.86799 * 120.00399 * 198.62110 * 6 4 3 9 9 H 1.48507 * 109.46931 * 90.00069 * 8 6 4 10 10 H 1.48499 * 109.47345 * 210.00361 * 8 6 4 11 11 H 1.48498 * 109.47177 * 330.00803 * 8 6 4 12 12 C 1.46507 * 120.00446 * 264.27559 * 3 2 1 13 13 H 1.08997 * 109.47003 * 183.52605 * 12 3 2 14 14 C 1.52996 * 109.46686 * 63.52677 * 12 3 2 15 15 C 1.52998 * 109.46748 * 303.52939 * 12 3 2 16 16 N 1.46495 * 109.47270 * 304.99353 * 15 12 3 17 17 C 1.34777 * 120.00277 * 180.02562 * 16 15 12 18 18 O 1.21286 * 119.99698 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00348 * 180.02562 * 17 16 15 20 20 C 1.52996 * 109.47141 * 180.02562 * 19 17 16 21 21 O 1.42902 * 109.47362 * 179.97438 * 20 19 17 22 22 C 1.35939 * 117.00562 * 179.97438 * 21 20 19 23 23 C 1.38712 * 120.02763 * 359.72733 * 22 21 20 24 24 C 1.38148 * 119.96955 * 179.79114 * 23 22 21 25 25 C 1.38456 * 120.03081 * 0.48236 * 24 23 22 26 26 F 1.35097 * 119.97199 * 179.72629 * 25 24 23 27 27 C 1.38451 * 120.05861 * 359.74665 * 25 24 23 28 28 C 1.38151 * 120.03188 * 0.02562 * 27 25 24 29 29 H 1.08996 * 109.46609 * 299.99549 * 1 2 3 30 30 H 1.08993 * 109.47111 * 59.99776 * 1 2 3 31 31 H 1.08993 * 109.46848 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46901 * 240.00387 * 2 1 3 33 33 H 1.08994 * 109.47541 * 120.00541 * 2 1 3 34 34 H 0.96997 * 120.00280 * 179.97438 * 7 6 4 35 35 H 1.08996 * 109.47599 * 300.00199 * 14 12 3 36 36 H 1.08997 * 109.47525 * 60.00536 * 14 12 3 37 37 H 1.09004 * 109.47129 * 180.02562 * 14 12 3 38 38 H 1.09001 * 109.47327 * 65.00127 * 15 12 3 39 39 H 1.09000 * 109.46821 * 184.99588 * 15 12 3 40 40 H 0.97002 * 120.00005 * 0.02562 * 16 15 12 41 41 H 1.09000 * 109.46834 * 299.99927 * 19 17 16 42 42 H 1.09000 * 109.47217 * 59.99871 * 19 17 16 43 43 H 1.09000 * 109.47025 * 299.99599 * 20 19 17 44 44 H 1.09000 * 109.47342 * 59.99737 * 20 19 17 45 45 H 1.07995 * 120.01330 * 359.97438 * 23 22 21 46 46 H 1.07998 * 119.98720 * 180.20515 * 24 23 22 47 47 H 1.08004 * 119.98774 * 179.97438 * 27 25 24 48 48 H 1.07997 * 120.01452 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1350 2.0661 1.1800 5 1 2.3294 1.5312 2.0980 6 6 1.9981 3.4474 1.1973 7 7 1.4074 4.0627 0.1949 8 14 2.6518 4.4328 2.6433 9 1 4.0597 4.8245 2.3792 10 1 1.8245 5.6525 2.8256 11 1 2.5911 3.6048 3.8745 12 6 2.3819 2.0298 -1.2624 13 1 2.7791 3.0241 -1.0588 14 6 1.1417 2.1480 -2.1505 15 6 3.4439 1.1929 -1.9783 16 7 4.5830 0.9792 -1.0823 17 6 5.6457 0.2643 -1.5019 18 8 5.6592 -0.2017 -2.6216 19 6 6.8173 0.0440 -0.5800 20 6 7.8799 -0.7917 -1.2964 21 8 8.9911 -1.0001 -0.4224 22 6 10.0301 -1.7299 -0.9082 23 6 9.9778 -2.2392 -2.1973 24 6 11.0362 -2.9770 -2.6913 25 6 12.1445 -3.2166 -1.8968 26 9 13.1764 -3.9429 -2.3791 27 6 12.1959 -2.7128 -0.6082 28 6 11.1410 -1.9707 -0.1133 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.3113 5.0278 0.2071 35 1 0.7443 1.1537 -2.3541 36 1 0.3850 2.7442 -1.6405 37 1 1.4121 2.6301 -3.0900 38 1 3.0182 0.2300 -2.2609 39 1 3.7787 1.7185 -2.8725 40 1 4.5724 1.3522 -0.1869 41 1 7.2428 1.0067 -0.2968 42 1 6.4823 -0.4823 0.3138 43 1 7.4547 -1.7544 -1.5799 44 1 8.2148 -0.2650 -2.1901 45 1 9.1114 -2.0566 -2.8156 46 1 10.9972 -3.3709 -3.6961 47 1 13.0608 -2.9007 0.0108 48 1 11.1812 -1.5782 0.8920 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154967838.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:03 Heat of formation + Delta-G solvation = -82.236774 kcal Electronic energy + Delta-G solvation = -28839.841073 eV Core-core repulsion = 24617.163934 eV Total energy + Delta-G solvation = -4222.677139 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.07481 -40.41727 -39.36181 -37.53477 -36.95515 -33.84619 -32.32920 -31.90792 -31.48822 -30.74800 -29.34780 -28.37067 -26.07693 -24.38370 -23.88434 -22.99057 -22.03990 -21.65365 -19.92062 -19.30524 -18.65552 -17.67650 -17.08973 -16.87191 -16.54986 -16.26412 -15.77960 -15.56658 -15.02992 -14.96330 -14.63160 -14.42324 -14.31066 -13.93468 -13.66972 -13.39316 -13.19728 -13.00231 -12.90166 -12.70645 -12.42215 -12.02993 -11.88345 -11.83910 -11.60243 -11.46548 -11.34098 -11.07986 -11.06072 -10.86945 -10.85249 -10.53681 -10.32979 -9.96587 -9.65091 -9.58771 -9.55517 -9.51772 -8.60081 -8.50496 -8.38084 -6.80152 -5.92423 -3.36286 0.83330 0.91561 2.72250 2.90308 3.26446 3.28074 3.37293 3.38134 3.83381 4.02175 4.35577 4.38543 4.46561 4.67327 4.80108 4.83263 4.98138 5.10723 5.21096 5.23244 5.32233 5.41784 5.55820 5.62537 5.66617 5.81363 5.82524 5.84484 5.94532 6.05108 6.09604 6.27201 6.39543 6.39796 6.45154 6.50753 6.65278 6.68303 6.73792 6.92299 6.98234 7.08706 7.22464 7.46391 7.56158 7.73055 8.00708 8.35006 8.57815 9.10604 9.72937 10.27386 11.14597 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016895 B = 0.002095 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.878954 B =13359.629484 C =14248.213126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.142 3.858 3 N -0.583 5.583 4 C -0.259 4.259 5 H 0.067 0.933 6 C 0.007 3.993 7 N -0.892 5.892 8 Si 0.898 3.102 9 H -0.287 1.287 10 H -0.292 1.292 11 H -0.280 1.280 12 C 0.177 3.823 13 H 0.103 0.897 14 C -0.144 4.144 15 C 0.101 3.899 16 N -0.698 5.698 17 C 0.512 3.488 18 O -0.563 6.563 19 C -0.141 4.141 20 C 0.076 3.924 21 O -0.313 6.313 22 C 0.129 3.871 23 C -0.180 4.180 24 C -0.111 4.111 25 C 0.053 3.947 26 F -0.144 7.144 27 C -0.114 4.114 28 C -0.126 4.126 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.027 0.973 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.254 0.746 35 H 0.029 0.971 36 H 0.080 0.920 37 H 0.029 0.971 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.413 0.587 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.142 0.858 46 H 0.138 0.862 47 H 0.141 0.859 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.342 -10.125 -2.840 18.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.016 3.984 3 N -0.305 5.305 4 C -0.389 4.389 5 H 0.085 0.915 6 C -0.192 4.192 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.214 1.214 10 H -0.219 1.219 11 H -0.205 1.205 12 C 0.069 3.931 13 H 0.121 0.879 14 C -0.203 4.203 15 C -0.024 4.024 16 N -0.348 5.348 17 C 0.297 3.703 18 O -0.444 6.444 19 C -0.181 4.181 20 C 0.001 3.999 21 O -0.226 6.226 22 C 0.083 3.917 23 C -0.199 4.199 24 C -0.130 4.130 25 C 0.034 3.966 26 F -0.122 7.122 27 C -0.133 4.133 28 C -0.145 4.145 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.048 0.952 36 H 0.099 0.901 37 H 0.048 0.952 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.250 0.750 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.160 0.840 46 H 0.155 0.845 47 H 0.159 0.841 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 15.281 -10.193 -3.459 18.691 hybrid contribution 0.148 0.648 0.846 1.076 sum 15.429 -9.545 -2.613 18.330 Atomic orbital electron populations 1.22394 0.99782 0.98379 1.02109 1.20795 0.91956 0.87596 0.98077 1.44025 1.73788 1.09736 1.02954 1.19166 1.43194 0.89224 0.87318 0.91532 1.25058 0.98861 0.97901 0.97422 1.70011 1.42654 1.08608 1.32292 0.86370 0.78572 0.79806 0.82478 1.21417 1.21881 1.20495 1.20526 0.90945 0.96636 0.84972 0.87916 1.22124 1.00587 0.99560 0.98017 1.22145 0.87110 1.00548 0.92632 1.45923 1.17187 1.52632 1.19104 1.20135 0.83820 0.78803 0.87552 1.90671 1.81434 1.51243 1.21042 1.21462 0.93908 1.02791 0.99984 1.22509 0.84499 1.00669 0.92266 1.86021 1.26382 1.67683 1.42559 1.19022 0.88371 0.92053 0.92272 1.21268 1.00739 1.02133 0.95774 1.20964 0.92366 0.99261 1.00424 1.17584 0.86662 0.98523 0.93871 1.91484 1.56893 1.75505 1.88350 1.20944 0.99662 0.98396 0.94295 1.20305 0.91638 1.01677 1.00851 0.92891 0.93153 0.95352 0.94471 0.94562 0.93566 0.95171 0.90069 0.95175 0.92790 0.92685 0.75046 0.87809 0.87683 0.90898 0.90930 0.83993 0.84457 0.84126 0.84041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 10.02 37.16 0.37 -2.76 16 2 C 0.14 2.74 5.73 -4.04 -0.02 2.71 16 3 N -0.58 -12.46 1.84 -165.66 -0.30 -12.76 16 4 C -0.26 -6.18 9.50 -15.06 -0.14 -6.32 16 5 H 0.07 1.60 7.90 -52.48 -0.41 1.19 16 6 C 0.01 0.18 4.84 -17.43 -0.08 0.09 16 7 N -0.89 -22.96 10.24 55.49 0.57 -22.39 16 8 Si 0.90 19.78 29.59 -169.99 -5.03 14.75 16 9 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 C 0.18 3.61 1.93 -67.93 -0.13 3.48 16 13 H 0.10 2.41 5.93 -51.93 -0.31 2.10 16 14 C -0.14 -2.86 8.25 37.16 0.31 -2.56 16 15 C 0.10 1.83 4.85 -4.05 -0.02 1.81 16 16 N -0.70 -11.55 5.39 -60.30 -0.32 -11.87 16 17 C 0.51 7.89 7.83 -10.99 -0.09 7.81 16 18 O -0.56 -10.28 15.98 5.55 0.09 -10.19 16 19 C -0.14 -1.65 6.07 -27.89 -0.17 -1.82 16 20 C 0.08 0.85 4.03 37.16 0.15 1.00 16 21 O -0.31 -3.55 10.14 -19.55 -0.20 -3.75 16 22 C 0.13 1.36 6.69 -39.23 -0.26 1.09 16 23 C -0.18 -1.77 9.04 -39.44 -0.36 -2.13 16 24 C -0.11 -1.03 10.02 -39.53 -0.40 -1.43 16 25 C 0.05 0.51 7.30 -39.42 -0.29 0.22 16 26 F -0.14 -1.48 17.27 2.25 0.04 -1.44 16 27 C -0.11 -0.97 10.02 -39.53 -0.40 -1.37 16 28 C -0.13 -1.14 9.98 -39.44 -0.39 -1.54 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.05 0.97 6.03 -51.93 -0.31 0.66 16 31 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.04 0.68 6.35 -51.93 -0.33 0.35 16 33 H 0.04 0.69 8.09 -51.93 -0.42 0.27 16 34 H 0.25 6.48 8.31 -40.82 -0.34 6.14 16 35 H 0.03 0.56 6.50 -51.93 -0.34 0.22 16 36 H 0.08 1.86 7.22 -51.93 -0.37 1.49 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 1.00 6.76 -51.93 -0.35 0.65 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.41 6.90 8.08 -40.82 -0.33 6.57 16 41 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.07 0.83 7.60 -51.93 -0.39 0.43 16 44 H 0.07 0.82 7.63 -51.93 -0.40 0.42 16 45 H 0.14 1.30 6.30 -52.49 -0.33 0.97 16 46 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 47 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 48 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 393.59 15.07 5.93 5.93 Total: -1.00 -27.08 393.59 -8.39 -35.47 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -7.24 Total: 7.94 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -1.92 Total: -1.69 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: -0.06 Total: -47.03 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.11 Total: -13.94 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -27.08 -8.39 -35.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154967838.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.766 kcal (2) G-P(sol) polarization free energy of solvation -27.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds