Wall clock time and date at job start Tue Mar 31 2020 21:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47060 * 2 1 4 4 C 1.36935 * 119.99857 * 84.27635 * 3 2 1 5 5 H 1.08006 * 120.00072 * 28.84540 * 4 3 2 6 6 C 1.38813 * 120.00228 * 209.11332 * 4 3 2 7 7 N 1.31619 * 119.99887 * 18.62832 * 6 4 3 8 8 Si 1.86799 * 120.00399 * 198.62110 * 6 4 3 9 9 H 1.48507 * 109.46931 * 90.00069 * 8 6 4 10 10 H 1.48499 * 109.47345 * 210.00361 * 8 6 4 11 11 H 1.48498 * 109.47177 * 330.00803 * 8 6 4 12 12 C 1.46507 * 120.00446 * 264.27559 * 3 2 1 13 13 H 1.08997 * 109.47003 * 183.52605 * 12 3 2 14 14 C 1.52996 * 109.46686 * 63.52677 * 12 3 2 15 15 C 1.52998 * 109.46748 * 303.52939 * 12 3 2 16 16 N 1.46495 * 109.47270 * 304.99353 * 15 12 3 17 17 C 1.34777 * 120.00277 * 180.02562 * 16 15 12 18 18 O 1.21286 * 119.99698 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00348 * 180.02562 * 17 16 15 20 20 C 1.52996 * 109.47141 * 180.02562 * 19 17 16 21 21 O 1.42902 * 109.47362 * 179.97438 * 20 19 17 22 22 C 1.35939 * 117.00562 * 179.97438 * 21 20 19 23 23 C 1.38712 * 120.02763 * 359.72733 * 22 21 20 24 24 C 1.38148 * 119.96955 * 179.79114 * 23 22 21 25 25 C 1.38456 * 120.03081 * 0.48236 * 24 23 22 26 26 F 1.35097 * 119.97199 * 179.72629 * 25 24 23 27 27 C 1.38451 * 120.05861 * 359.74665 * 25 24 23 28 28 C 1.38151 * 120.03188 * 0.02562 * 27 25 24 29 29 H 1.08996 * 109.46609 * 299.99549 * 1 2 3 30 30 H 1.08993 * 109.47111 * 59.99776 * 1 2 3 31 31 H 1.08993 * 109.46848 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46901 * 240.00387 * 2 1 3 33 33 H 1.08994 * 109.47541 * 120.00541 * 2 1 3 34 34 H 0.96997 * 120.00280 * 179.97438 * 7 6 4 35 35 H 1.08996 * 109.47599 * 300.00199 * 14 12 3 36 36 H 1.08997 * 109.47525 * 60.00536 * 14 12 3 37 37 H 1.09004 * 109.47129 * 180.02562 * 14 12 3 38 38 H 1.09001 * 109.47327 * 65.00127 * 15 12 3 39 39 H 1.09000 * 109.46821 * 184.99588 * 15 12 3 40 40 H 0.97002 * 120.00005 * 0.02562 * 16 15 12 41 41 H 1.09000 * 109.46834 * 299.99927 * 19 17 16 42 42 H 1.09000 * 109.47217 * 59.99871 * 19 17 16 43 43 H 1.09000 * 109.47025 * 299.99599 * 20 19 17 44 44 H 1.09000 * 109.47342 * 59.99737 * 20 19 17 45 45 H 1.07995 * 120.01330 * 359.97438 * 23 22 21 46 46 H 1.07998 * 119.98720 * 180.20515 * 24 23 22 47 47 H 1.08004 * 119.98774 * 179.97438 * 27 25 24 48 48 H 1.07997 * 120.01452 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1350 2.0661 1.1800 5 1 2.3294 1.5312 2.0980 6 6 1.9981 3.4474 1.1973 7 7 1.4074 4.0627 0.1949 8 14 2.6518 4.4328 2.6433 9 1 4.0597 4.8245 2.3792 10 1 1.8245 5.6525 2.8256 11 1 2.5911 3.6048 3.8745 12 6 2.3819 2.0298 -1.2624 13 1 2.7791 3.0241 -1.0588 14 6 1.1417 2.1480 -2.1505 15 6 3.4439 1.1929 -1.9783 16 7 4.5830 0.9792 -1.0823 17 6 5.6457 0.2643 -1.5019 18 8 5.6592 -0.2017 -2.6216 19 6 6.8173 0.0440 -0.5800 20 6 7.8799 -0.7917 -1.2964 21 8 8.9911 -1.0001 -0.4224 22 6 10.0301 -1.7299 -0.9082 23 6 9.9778 -2.2392 -2.1973 24 6 11.0362 -2.9770 -2.6913 25 6 12.1445 -3.2166 -1.8968 26 9 13.1764 -3.9429 -2.3791 27 6 12.1959 -2.7128 -0.6082 28 6 11.1410 -1.9707 -0.1133 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.3113 5.0278 0.2071 35 1 0.7443 1.1537 -2.3541 36 1 0.3850 2.7442 -1.6405 37 1 1.4121 2.6301 -3.0900 38 1 3.0182 0.2300 -2.2609 39 1 3.7787 1.7185 -2.8725 40 1 4.5724 1.3522 -0.1869 41 1 7.2428 1.0067 -0.2968 42 1 6.4823 -0.4823 0.3138 43 1 7.4547 -1.7544 -1.5799 44 1 8.2148 -0.2650 -2.1901 45 1 9.1114 -2.0566 -2.8156 46 1 10.9972 -3.3709 -3.6961 47 1 13.0608 -2.9007 0.0108 48 1 11.1812 -1.5782 0.8920 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154967838.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:02 Heat of formation + Delta-G solvation = -95.489426 kcal Electronic energy + Delta-G solvation = -28840.415751 eV Core-core repulsion = 24617.163934 eV Total energy + Delta-G solvation = -4223.251817 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.83395 -41.25668 -40.58699 -38.67348 -38.20345 -35.30467 -33.72816 -33.30743 -32.36641 -32.05457 -30.14600 -30.06921 -27.38242 -25.87546 -25.17302 -23.77917 -23.26202 -22.83822 -21.20939 -20.87565 -19.49840 -18.77697 -18.43843 -17.68445 -17.50883 -17.43593 -16.94085 -16.58610 -16.40855 -16.33738 -15.73206 -15.68718 -15.31243 -15.20470 -14.66122 -14.58697 -14.36711 -14.18032 -13.92632 -13.83487 -13.67059 -13.57924 -13.24638 -13.07113 -12.97813 -12.81296 -12.71817 -12.68655 -12.58473 -12.16725 -12.06030 -11.79314 -11.70560 -11.69680 -11.26434 -11.23514 -10.91104 -10.41793 -10.20275 -9.90799 -9.14379 -8.57668 -7.78885 -5.22904 0.14526 0.17637 1.52317 1.57300 1.62187 1.67371 1.80344 2.54907 2.57539 2.68601 3.30913 3.36122 3.60896 3.66515 3.77468 3.80313 3.94878 4.05799 4.11089 4.27587 4.30294 4.41212 4.48677 4.55109 4.58986 4.72870 4.77499 4.80477 4.87487 4.90530 4.91211 4.93066 5.05112 5.11282 5.12400 5.13099 5.19154 5.22694 5.35564 5.55133 5.62369 5.68524 5.77778 5.78873 5.94623 6.29290 6.50657 6.70331 7.25992 7.30792 7.96603 8.46096 9.25809 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016895 B = 0.002095 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.878954 B =13359.629484 C =14248.213126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.141 3.859 3 N -0.590 5.590 4 C -0.254 4.254 5 H 0.065 0.935 6 C -0.036 4.036 7 N -0.916 5.916 8 Si 0.952 3.048 9 H -0.284 1.284 10 H -0.307 1.307 11 H -0.275 1.275 12 C 0.182 3.818 13 H 0.074 0.926 14 C -0.134 4.134 15 C 0.114 3.886 16 N -0.701 5.701 17 C 0.514 3.486 18 O -0.591 6.591 19 C -0.132 4.132 20 C 0.081 3.919 21 O -0.318 6.318 22 C 0.110 3.890 23 C -0.187 4.187 24 C -0.115 4.115 25 C 0.039 3.961 26 F -0.149 7.149 27 C -0.110 4.110 28 C -0.127 4.127 29 H 0.028 0.972 30 H 0.040 0.960 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.041 0.959 34 H 0.246 0.754 35 H 0.041 0.959 36 H 0.048 0.952 37 H 0.043 0.957 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.413 0.587 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.145 0.855 46 H 0.151 0.849 47 H 0.165 0.835 48 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.689 -11.311 -2.244 20.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.016 3.984 3 N -0.312 5.312 4 C -0.384 4.384 5 H 0.083 0.917 6 C -0.233 4.233 7 N -0.561 5.561 8 Si 0.782 3.218 9 H -0.211 1.211 10 H -0.235 1.235 11 H -0.200 1.200 12 C 0.075 3.925 13 H 0.092 0.908 14 C -0.193 4.193 15 C -0.012 4.012 16 N -0.351 5.351 17 C 0.301 3.699 18 O -0.474 6.474 19 C -0.171 4.171 20 C 0.005 3.995 21 O -0.232 6.232 22 C 0.065 3.935 23 C -0.206 4.206 24 C -0.134 4.134 25 C 0.020 3.980 26 F -0.128 7.128 27 C -0.128 4.128 28 C -0.146 4.146 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.250 0.750 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.162 0.838 46 H 0.169 0.831 47 H 0.182 0.818 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 16.645 -11.406 -2.854 20.379 hybrid contribution -0.252 0.942 0.643 1.167 sum 16.394 -10.464 -2.211 19.574 Atomic orbital electron populations 1.22279 0.99298 0.99778 1.00429 1.20875 0.92247 0.86421 0.98873 1.44124 1.74104 1.10324 1.02616 1.19324 1.41692 0.89339 0.88048 0.91697 1.25585 0.99711 0.98796 0.99246 1.70152 1.44186 1.08043 1.33730 0.85518 0.77751 0.78025 0.80525 1.21065 1.23473 1.20037 1.20364 0.91602 0.95585 0.84934 0.90845 1.21974 0.99559 0.99654 0.98127 1.21832 0.87029 0.99793 0.92498 1.45905 1.17228 1.53090 1.18834 1.20669 0.84097 0.77575 0.87548 1.90660 1.81974 1.52209 1.22508 1.21393 0.92428 1.03954 0.99373 1.22389 0.84548 1.00394 0.92121 1.85987 1.26529 1.68109 1.42577 1.19284 0.88691 0.92662 0.92909 1.21343 1.01073 1.02389 0.95800 1.21146 0.92098 0.99007 1.01153 1.17815 0.86708 0.98895 0.94558 1.91470 1.57123 1.75705 1.88493 1.21208 1.00178 0.97388 0.94041 1.20543 0.91140 1.01402 1.01466 0.95234 0.94074 0.92397 0.93240 0.94076 0.94438 0.94047 0.93285 0.93810 0.92898 0.92660 0.75044 0.86237 0.86172 0.91197 0.91239 0.83778 0.83083 0.81793 0.82401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.72 10.02 71.98 0.72 -5.00 16 2 C 0.14 5.23 5.73 86.38 0.49 5.72 16 3 N -0.59 -24.82 1.84 -678.03 -1.25 -26.07 16 4 C -0.25 -11.96 9.50 84.03 0.80 -11.16 16 5 H 0.07 3.06 7.90 -2.91 -0.02 3.03 16 6 C -0.04 -1.80 4.84 84.86 0.41 -1.39 16 7 N -0.92 -47.95 10.24 21.65 0.22 -47.73 16 8 Si 0.95 40.79 29.59 68.60 2.03 42.82 16 9 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 10 H -0.31 -13.84 7.11 99.48 0.71 -13.14 16 11 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 12 C 0.18 7.41 1.93 44.99 0.09 7.50 16 13 H 0.07 3.48 5.93 -2.39 -0.01 3.46 16 14 C -0.13 -5.31 8.25 71.98 0.59 -4.72 16 15 C 0.11 4.03 4.85 86.38 0.42 4.45 16 16 N -0.70 -22.32 5.39 -463.07 -2.49 -24.82 16 17 C 0.51 15.12 7.83 87.66 0.69 15.81 16 18 O -0.59 -20.94 15.98 -3.05 -0.05 -20.99 16 19 C -0.13 -2.81 6.07 29.85 0.18 -2.63 16 20 C 0.08 1.71 4.03 71.98 0.29 2.00 16 21 O -0.32 -6.70 10.14 -92.86 -0.94 -7.64 16 22 C 0.11 2.17 6.69 22.49 0.15 2.32 16 23 C -0.19 -3.50 9.04 22.36 0.20 -3.30 16 24 C -0.12 -2.01 10.02 22.30 0.22 -1.78 16 25 C 0.04 0.71 7.30 22.37 0.16 0.87 16 26 F -0.15 -2.89 17.27 44.97 0.78 -2.12 16 27 C -0.11 -1.65 10.02 22.30 0.22 -1.43 16 28 C -0.13 -2.06 9.98 22.36 0.22 -1.84 16 29 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.04 1.54 6.03 -2.39 -0.01 1.53 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.71 6.35 -2.38 -0.02 1.70 16 33 H 0.04 1.48 8.09 -2.39 -0.02 1.46 16 34 H 0.25 12.86 8.31 -92.71 -0.77 12.09 16 35 H 0.04 1.51 6.50 -2.39 -0.02 1.49 16 36 H 0.05 2.27 7.22 -2.39 -0.02 2.25 16 37 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.05 1.89 6.76 -2.39 -0.02 1.87 16 39 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.41 13.30 8.08 -92.71 -0.75 12.55 16 41 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.07 1.51 7.60 -2.39 -0.02 1.49 16 44 H 0.07 1.50 7.63 -2.39 -0.02 1.48 16 45 H 0.14 2.54 6.30 -2.91 -0.02 2.53 16 46 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 47 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 48 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -57.31 393.59 4.39 -52.92 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.22 Total: 28.21 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 5.87 Total: 5.42 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -3.52 Total: -98.62 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.99 Total: -28.64 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.78 Total: -2.12 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -57.31 4.39 -52.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154967838.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.567 kcal (2) G-P(sol) polarization free energy of solvation -57.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds