Wall clock time and date at job start Tue Mar 31 2020 21:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47220 * 2 1 4 4 C 1.36935 * 120.00288 * 275.24591 * 3 2 1 5 5 H 1.08005 * 119.99657 * 26.66266 * 4 3 2 6 6 C 1.38805 * 120.00417 * 206.67043 * 4 3 2 7 7 N 1.31622 * 119.99968 * 24.73643 * 6 4 3 8 8 Si 1.86807 * 120.00196 * 204.73792 * 6 4 3 9 9 H 1.48499 * 109.46739 * 84.99419 * 8 6 4 10 10 H 1.48498 * 109.47110 * 204.99307 * 8 6 4 11 11 H 1.48497 * 109.46847 * 324.99388 * 8 6 4 12 12 C 1.46503 * 119.99907 * 95.24973 * 3 2 1 13 13 H 1.09001 * 109.46747 * 179.97438 * 12 3 2 14 14 C 1.52997 * 109.47383 * 59.99784 * 12 3 2 15 15 C 1.53004 * 109.46976 * 299.99786 * 12 3 2 16 16 N 1.46498 * 109.47038 * 305.00206 * 15 12 3 17 17 C 1.34781 * 120.00347 * 180.02562 * 16 15 12 18 18 O 1.21287 * 119.99347 * 359.97438 * 17 16 15 19 19 C 1.50692 * 120.00282 * 180.02562 * 17 16 15 20 20 C 1.50705 * 109.47174 * 179.97438 * 19 17 16 21 21 C 1.38174 * 120.01006 * 264.72502 * 20 19 17 22 22 C 1.38434 * 120.02303 * 179.79039 * 21 20 19 23 23 F 1.35103 * 119.96758 * 180.24942 * 22 21 20 24 24 C 1.38475 * 120.06503 * 0.45841 * 22 21 20 25 25 C 1.38131 * 120.02763 * 359.79575 * 24 22 21 26 26 C 1.38681 * 120.01506 * 84.99828 * 20 19 17 27 27 O 1.35946 * 120.03307 * 359.97438 * 26 20 19 28 28 C 1.42903 * 116.99987 * 179.97438 * 27 26 20 29 29 H 1.09004 * 109.46906 * 59.99962 * 1 2 3 30 30 H 1.09002 * 109.47379 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47268 * 300.00337 * 1 2 3 32 32 H 1.09007 * 109.46894 * 240.00027 * 2 1 3 33 33 H 1.09004 * 109.46906 * 120.00038 * 2 1 3 34 34 H 0.97003 * 119.99624 * 180.02562 * 7 6 4 35 35 H 1.08996 * 109.47521 * 180.02562 * 14 12 3 36 36 H 1.09000 * 109.46863 * 300.00443 * 14 12 3 37 37 H 1.08997 * 109.47019 * 59.99556 * 14 12 3 38 38 H 1.09002 * 109.47197 * 65.00010 * 15 12 3 39 39 H 1.09001 * 109.46986 * 185.00501 * 15 12 3 40 40 H 0.97004 * 120.00336 * 359.97438 * 16 15 12 41 41 H 1.09002 * 109.46974 * 299.99672 * 19 17 16 42 42 H 1.08996 * 109.47320 * 59.99671 * 19 17 16 43 43 H 1.07997 * 119.98940 * 0.02562 * 21 20 19 44 44 H 1.08001 * 119.98896 * 179.76720 * 24 22 21 45 45 H 1.08003 * 120.01208 * 179.97438 * 25 24 22 46 46 H 1.08991 * 109.47496 * 300.00492 * 28 27 26 47 47 H 1.08995 * 109.46524 * 60.00868 * 28 27 26 48 48 H 1.09007 * 109.46612 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1444 2.0629 -1.1809 5 1 1.5227 1.8013 -2.0244 6 6 3.0712 3.0900 -1.2939 7 7 4.1289 3.1111 -0.5108 8 14 2.8174 4.4423 -2.5575 9 1 1.9353 5.4924 -1.9880 10 1 4.1297 5.0384 -2.9149 11 1 2.1855 3.8709 -3.7738 12 6 2.3720 2.0331 1.2634 13 1 2.7124 3.0493 1.0650 14 6 3.4907 1.2454 1.9481 15 6 1.1450 2.0748 2.1766 16 7 0.0356 2.7246 1.4745 17 6 -1.1549 2.8748 2.0883 18 8 -1.3077 2.4715 3.2219 19 6 -2.2963 3.5427 1.3658 20 6 -3.5048 3.5839 2.2653 21 6 -4.4670 2.5963 2.1757 22 6 -5.5750 2.6316 3.0048 23 9 -6.5127 1.6627 2.9197 24 6 -5.7254 3.6614 3.9183 25 6 -4.7676 4.6528 4.0063 26 6 -3.6543 4.6161 3.1793 27 8 -2.7108 5.5911 3.2650 28 6 -2.9303 6.6235 4.2284 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 4.7764 3.8291 -0.5896 35 1 3.7535 1.7302 2.8883 36 1 3.1507 0.2290 2.1464 37 1 4.3648 1.2156 1.2975 38 1 0.8585 1.0585 2.4469 39 1 1.3830 2.6375 3.0794 40 1 0.1579 3.0475 0.5680 41 1 -2.0098 4.5588 1.0948 42 1 -2.5344 2.9794 0.4635 43 1 -4.3527 1.7946 1.4612 44 1 -6.5922 3.6897 4.5619 45 1 -4.8854 5.4560 4.7186 46 1 -3.8640 7.1384 4.0029 47 1 -2.9889 6.1844 5.2243 48 1 -2.1054 7.3351 4.1927 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155980049.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:54 Heat of formation + Delta-G solvation = -90.144941 kcal Electronic energy + Delta-G solvation = -30449.128309 eV Core-core repulsion = 26226.108245 eV Total energy + Delta-G solvation = -4223.020063 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.81708 -41.46028 -40.36552 -38.62731 -38.12322 -35.14366 -34.01606 -33.69422 -32.63878 -30.86158 -29.96164 -29.22836 -28.01273 -26.53710 -25.75286 -23.51615 -23.28854 -22.94353 -21.16689 -20.92465 -19.08079 -18.74850 -18.14993 -18.02292 -17.86767 -17.02694 -16.73628 -16.42920 -16.36593 -16.33271 -15.73743 -15.65271 -15.43648 -15.29738 -14.54713 -14.40711 -14.30574 -14.15910 -13.93746 -13.72374 -13.70387 -13.50845 -13.20701 -13.19275 -12.80175 -12.78284 -12.72679 -12.63537 -12.49869 -12.36930 -12.04348 -11.86278 -11.81467 -11.75974 -11.34882 -11.16617 -10.86065 -10.35804 -10.02543 -9.83053 -9.05365 -8.61517 -7.81083 -5.20107 0.11424 0.21229 1.52799 1.57420 1.62307 1.79946 2.30060 2.35373 2.58351 2.72828 3.27260 3.31302 3.56807 3.66708 3.71562 4.01155 4.11467 4.15294 4.29194 4.34594 4.40772 4.42280 4.45400 4.48603 4.60462 4.70558 4.71801 4.73083 4.82109 4.85995 4.92069 4.94191 5.00790 5.07433 5.09480 5.11039 5.23625 5.28904 5.34595 5.56060 5.64090 5.71771 5.72183 5.80120 5.87678 6.37288 6.48129 6.79126 7.24521 7.41374 7.96514 8.46303 9.23680 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013026 B = 0.003270 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.034377 B = 8560.041672 C = 9176.090018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.139 3.861 3 N -0.591 5.591 4 C -0.259 4.259 5 H 0.065 0.935 6 C -0.034 4.034 7 N -0.913 5.913 8 Si 0.946 3.054 9 H -0.281 1.281 10 H -0.305 1.305 11 H -0.275 1.275 12 C 0.178 3.822 13 H 0.075 0.925 14 C -0.136 4.136 15 C 0.119 3.881 16 N -0.701 5.701 17 C 0.514 3.486 18 O -0.586 6.586 19 C -0.091 4.091 20 C -0.083 4.083 21 C -0.111 4.111 22 C 0.041 3.959 23 F -0.148 7.148 24 C -0.110 4.110 25 C -0.179 4.179 26 C 0.122 3.878 27 O -0.331 6.331 28 C 0.017 3.983 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.248 0.752 35 H 0.049 0.951 36 H 0.042 0.958 37 H 0.045 0.955 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.410 0.590 41 H 0.115 0.885 42 H 0.123 0.877 43 H 0.147 0.853 44 H 0.163 0.837 45 H 0.166 0.834 46 H 0.077 0.923 47 H 0.062 0.938 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.309 5.117 8.021 19.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.013 3.987 3 N -0.313 5.313 4 C -0.389 4.389 5 H 0.083 0.917 6 C -0.231 4.231 7 N -0.558 5.558 8 Si 0.776 3.224 9 H -0.208 1.208 10 H -0.233 1.233 11 H -0.200 1.200 12 C 0.071 3.929 13 H 0.093 0.907 14 C -0.195 4.195 15 C -0.007 4.007 16 N -0.351 5.351 17 C 0.301 3.699 18 O -0.467 6.467 19 C -0.130 4.130 20 C -0.084 4.084 21 C -0.130 4.130 22 C 0.022 3.978 23 F -0.127 7.127 24 C -0.129 4.129 25 C -0.198 4.198 26 C 0.077 3.923 27 O -0.244 6.244 28 C -0.077 4.077 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.246 0.754 41 H 0.133 0.867 42 H 0.141 0.859 43 H 0.165 0.835 44 H 0.180 0.820 45 H 0.184 0.816 46 H 0.095 0.905 47 H 0.081 0.919 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -17.103 4.915 8.686 19.802 hybrid contribution 0.298 0.590 -0.930 1.141 sum -16.805 5.505 7.757 19.310 Atomic orbital electron populations 1.22269 0.97902 1.00271 1.01123 1.20825 0.93268 0.86067 0.98542 1.44098 1.75866 1.09376 1.01964 1.19287 1.14188 1.13123 0.92257 0.91700 1.25472 0.94503 1.03067 1.00037 1.70226 1.09831 1.32492 1.43227 0.85620 0.76217 0.80763 0.79848 1.20799 1.23269 1.20025 1.20409 0.89973 0.98280 0.84237 0.90665 1.21882 0.99578 0.98912 0.99126 1.21807 0.87913 0.96107 0.94897 1.45927 1.10869 1.59354 1.18974 1.20831 0.83974 0.78750 0.86316 1.90635 1.83708 1.52205 1.20167 1.20500 0.90129 1.03973 0.98437 1.18578 0.96489 0.94515 0.98831 1.20962 0.92831 0.98975 1.00227 1.17665 0.89214 0.89759 1.01140 1.91462 1.63711 1.61701 1.95841 1.21192 1.00936 0.92754 0.98021 1.21333 0.94068 1.02199 1.02156 1.19028 0.89093 0.89345 0.94879 1.86095 1.44757 1.34981 1.58609 1.23374 1.04586 0.88709 0.91068 0.93658 0.92762 0.93417 0.95012 0.93991 0.94317 0.93199 0.93876 0.93586 0.93271 0.93386 0.75350 0.86652 0.85879 0.83530 0.81951 0.81626 0.90467 0.91913 0.87012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.27 9.85 71.98 0.71 -4.56 16 2 C 0.14 5.39 5.69 86.38 0.49 5.88 16 3 N -0.59 -26.04 1.88 -678.03 -1.27 -27.32 16 4 C -0.26 -12.58 9.28 84.03 0.78 -11.81 16 5 H 0.07 3.15 7.94 -2.91 -0.02 3.13 16 6 C -0.03 -1.69 4.71 84.86 0.40 -1.29 16 7 N -0.91 -48.88 10.91 21.65 0.24 -48.65 16 8 Si 0.95 41.18 29.62 68.60 2.03 43.21 16 9 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.31 -13.86 7.11 99.48 0.71 -13.16 16 11 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 12 C 0.18 7.60 1.97 44.99 0.09 7.69 16 13 H 0.08 3.70 5.76 -2.39 -0.01 3.69 16 14 C -0.14 -5.52 9.08 71.98 0.65 -4.87 16 15 C 0.12 4.55 4.33 86.38 0.37 4.92 16 16 N -0.70 -24.92 3.99 -463.05 -1.85 -26.77 16 17 C 0.51 17.62 7.59 87.65 0.67 18.29 16 18 O -0.59 -23.97 16.03 -3.05 -0.05 -24.02 16 19 C -0.09 -2.42 5.55 29.10 0.16 -2.26 16 20 C -0.08 -2.21 4.39 -19.77 -0.09 -2.30 16 21 C -0.11 -2.80 9.65 22.30 0.22 -2.58 16 22 C 0.04 0.99 7.30 22.37 0.16 1.15 16 23 F -0.15 -3.66 17.27 44.97 0.78 -2.89 16 24 C -0.11 -2.15 10.02 22.30 0.22 -1.93 16 25 C -0.18 -3.47 9.04 22.36 0.20 -3.27 16 26 C 0.12 3.05 6.66 22.49 0.15 3.20 16 27 O -0.33 -8.12 9.63 -92.94 -0.90 -9.01 16 28 C 0.02 0.25 9.81 113.37 1.11 1.36 16 29 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.05 1.66 4.95 -2.39 -0.01 1.65 16 32 H 0.03 1.28 8.08 -2.38 -0.02 1.26 16 33 H 0.04 1.58 6.44 -2.39 -0.02 1.56 16 34 H 0.25 13.13 8.31 -92.71 -0.77 12.36 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.04 1.61 6.66 -2.39 -0.02 1.59 16 37 H 0.04 2.14 7.69 -2.39 -0.02 2.12 16 38 H 0.05 1.92 7.01 -2.39 -0.02 1.90 16 39 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.41 14.82 7.89 -92.71 -0.73 14.09 16 41 H 0.12 2.86 7.69 -2.39 -0.02 2.84 16 42 H 0.12 2.71 8.05 -2.39 -0.02 2.69 16 43 H 0.15 3.32 8.06 -2.91 -0.02 3.29 16 44 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 45 H 0.17 2.08 6.30 -2.91 -0.02 2.06 16 46 H 0.08 0.78 7.66 -2.39 -0.02 0.76 16 47 H 0.06 0.83 7.66 -2.39 -0.02 0.81 16 48 H 0.11 1.36 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -62.60 390.49 5.53 -57.07 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: 0.25 Total: 30.73 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 6.30 Total: 7.64 kcal Atomic # 7 Polarization: -99.85 SS G_CDS: -2.89 Total: -102.74 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -0.94 Total: -33.03 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.78 Total: -2.89 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -62.60 5.53 -57.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155980049.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.075 kcal (2) G-P(sol) polarization free energy of solvation -62.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds