Wall clock time and date at job start Tue Mar 31 2020 21:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46500 * 109.47079 * 2 1 4 4 C 1.36938 * 120.00294 * 274.58479 * 3 2 1 5 5 H 1.07994 * 120.00295 * 140.38579 * 4 3 2 6 6 C 1.38818 * 119.99560 * 320.38023 * 4 3 2 7 7 N 1.31616 * 119.99667 * 156.48640 * 6 4 3 8 8 Si 1.86794 * 120.00273 * 336.49200 * 6 4 3 9 9 H 1.48503 * 109.47375 * 95.29811 * 8 6 4 10 10 H 1.48502 * 109.46945 * 215.29977 * 8 6 4 11 11 H 1.48503 * 109.47199 * 335.29586 * 8 6 4 12 12 C 1.46503 * 119.99944 * 94.58142 * 3 2 1 13 13 H 1.08999 * 109.47318 * 179.97438 * 12 3 2 14 14 C 1.53002 * 109.47140 * 59.99860 * 12 3 2 15 15 C 1.53004 * 109.47183 * 300.00316 * 12 3 2 16 16 N 1.46507 * 109.46849 * 304.99876 * 15 12 3 17 17 C 1.34777 * 119.99770 * 180.02562 * 16 15 12 18 18 O 1.21552 * 119.99867 * 0.27178 * 17 16 15 19 19 C 1.47850 * 119.99681 * 180.02562 * 17 16 15 20 20 C 1.39595 * 120.12746 * 180.02562 * 19 17 16 21 21 C 1.37943 * 119.89973 * 179.97438 * 20 19 17 22 22 C 1.38340 * 120.17999 * 359.97438 * 21 20 19 23 23 C 1.50696 * 119.86954 * 180.02562 * 22 21 20 24 24 O 1.42899 * 109.47019 * 359.97438 * 23 22 21 25 25 C 1.42901 * 113.99800 * 180.02562 * 24 23 22 26 26 C 1.38560 * 120.26272 * 359.97438 * 22 21 20 27 27 F 1.35097 * 119.94797 * 180.02562 * 26 22 21 28 28 C 1.38206 * 120.09432 * 359.79069 * 26 22 21 29 29 H 1.09001 * 109.47364 * 299.99715 * 1 2 3 30 30 H 1.08995 * 109.47533 * 60.00021 * 1 2 3 31 31 H 1.09011 * 109.47289 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47364 * 240.00285 * 2 1 3 33 33 H 1.08998 * 109.47420 * 120.00504 * 2 1 3 34 34 H 0.96997 * 120.00179 * 180.02562 * 7 6 4 35 35 H 1.09008 * 109.46876 * 60.00243 * 14 12 3 36 36 H 1.08992 * 109.47005 * 179.97438 * 14 12 3 37 37 H 1.08999 * 109.47087 * 300.00229 * 14 12 3 38 38 H 1.08997 * 109.47231 * 185.00225 * 15 12 3 39 39 H 1.09005 * 109.47058 * 64.99836 * 15 12 3 40 40 H 0.97005 * 119.99882 * 0.02562 * 16 15 12 41 41 H 1.07996 * 120.05184 * 359.97438 * 20 19 17 42 42 H 1.08003 * 119.90968 * 179.97438 * 21 20 19 43 43 H 1.09005 * 109.46888 * 120.00005 * 23 22 21 44 44 H 1.08996 * 109.47046 * 239.99589 * 23 22 21 45 45 H 1.08999 * 109.47393 * 179.97438 * 25 24 23 46 46 H 1.08998 * 109.47299 * 299.99663 * 25 24 23 47 47 H 1.09002 * 109.47363 * 59.99822 * 25 24 23 48 48 H 1.07994 * 120.09117 * 180.25426 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1571 2.0584 -1.1821 5 1 1.8866 3.1022 -1.2415 6 6 2.6458 1.4031 -2.3041 7 7 2.3636 1.8576 -3.5066 8 14 3.7037 -0.1238 -2.1072 9 1 2.8507 -1.3345 -2.2163 10 1 4.7385 -0.1496 -3.1719 11 1 4.3630 -0.1010 -0.7767 12 6 2.3580 2.0381 1.2647 13 1 2.7006 3.0536 1.0662 14 6 3.4692 1.2531 1.9647 15 6 1.1211 2.0832 2.1643 16 7 0.0193 2.7303 1.4475 17 6 -1.1777 2.8826 2.0477 18 8 -1.3417 2.4877 3.1855 19 6 -2.2897 3.5351 1.3241 20 6 -3.5306 3.6948 1.9434 21 6 -4.5647 4.3048 1.2641 22 6 -4.3752 4.7589 -0.0288 23 6 -5.5096 5.4247 -0.7642 24 8 -6.6636 5.4664 0.0776 25 6 -7.8027 6.0812 -0.5278 26 6 -3.1462 4.6050 -0.6499 27 9 -2.9681 5.0514 -1.9125 28 6 -2.1011 4.0000 0.0221 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0278 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.7047 1.3995 -4.2906 35 1 4.3504 1.2209 1.3238 36 1 3.7222 1.7420 2.9054 37 1 3.1270 0.2374 2.1632 38 1 1.3492 2.6493 3.0674 39 1 0.8317 1.0678 2.4353 40 1 0.1514 3.0490 0.5409 41 1 -3.6807 3.3415 2.9528 42 1 -5.5249 4.4280 1.7430 43 1 -5.2204 6.4401 -1.0355 44 1 -5.7391 4.8588 -1.6670 45 1 -8.6362 6.0731 0.1745 46 1 -7.5616 7.1103 -0.7942 47 1 -8.0794 5.5288 -1.4258 48 1 -1.1420 3.8837 -0.4606 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156613259.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:38 Heat of formation + Delta-G solvation = -76.094360 kcal Electronic energy + Delta-G solvation = -30165.846712 eV Core-core repulsion = 25943.435928 eV Total energy + Delta-G solvation = -4222.410784 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.92453 -40.10780 -38.83553 -37.69773 -37.05431 -34.04178 -32.61584 -31.91836 -31.20794 -30.58106 -28.72531 -27.92317 -26.36792 -25.40931 -23.68896 -22.81594 -22.59711 -22.12719 -20.16346 -19.37990 -18.04275 -17.11537 -16.94901 -16.38200 -16.34452 -16.24569 -15.78888 -15.68016 -15.49367 -15.27541 -14.77698 -14.48403 -14.35643 -14.02466 -13.29656 -13.21055 -13.15391 -12.98942 -12.83444 -12.74186 -12.48366 -12.35502 -12.00261 -11.89811 -11.78869 -11.53301 -11.40102 -11.39153 -11.26501 -11.04550 -10.75850 -10.41634 -10.20253 -10.02289 -9.76919 -9.74019 -9.53224 -9.07277 -8.78649 -8.57067 -8.53830 -6.90641 -6.09142 -3.52558 0.64792 1.12196 2.86993 3.28496 3.28536 3.43363 3.46687 3.49140 3.77603 4.14052 4.44054 4.46935 4.70864 4.84979 4.88053 4.93264 4.95923 5.09181 5.11107 5.13950 5.21826 5.29692 5.36666 5.40989 5.63958 5.76530 5.86666 5.91947 5.96885 5.97404 6.02404 6.08879 6.13592 6.21603 6.28230 6.32547 6.37974 6.58601 6.65041 6.70793 6.73642 6.77008 6.85636 6.90545 7.12178 7.89856 7.98133 8.26614 8.48925 8.90455 9.62249 10.04906 11.05513 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014521 B = 0.003197 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.826176 B = 8755.065373 C =10069.699148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.133 3.867 3 N -0.599 5.599 4 C -0.277 4.277 5 H 0.077 0.923 6 C 0.044 3.956 7 N -0.893 5.893 8 Si 0.878 3.122 9 H -0.287 1.287 10 H -0.304 1.304 11 H -0.267 1.267 12 C 0.154 3.846 13 H 0.079 0.921 14 C -0.162 4.162 15 C 0.107 3.893 16 N -0.697 5.697 17 C 0.553 3.447 18 O -0.549 6.549 19 C -0.100 4.100 20 C -0.074 4.074 21 C -0.081 4.081 22 C -0.108 4.108 23 C 0.104 3.896 24 O -0.386 6.386 25 C 0.032 3.968 26 C 0.100 3.900 27 F -0.132 7.132 28 C -0.113 4.113 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.034 0.966 32 H 0.047 0.953 33 H 0.040 0.960 34 H 0.264 0.736 35 H 0.060 0.940 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.412 0.588 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.088 0.912 46 H 0.043 0.957 47 H 0.043 0.957 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.140 6.366 7.549 17.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.008 3.992 3 N -0.322 5.322 4 C -0.405 4.405 5 H 0.094 0.906 6 C -0.158 4.158 7 N -0.533 5.533 8 Si 0.708 3.292 9 H -0.215 1.215 10 H -0.232 1.232 11 H -0.192 1.192 12 C 0.046 3.954 13 H 0.097 0.903 14 C -0.221 4.221 15 C -0.018 4.018 16 N -0.349 5.349 17 C 0.339 3.661 18 O -0.429 6.429 19 C -0.103 4.103 20 C -0.093 4.093 21 C -0.099 4.099 22 C -0.109 4.109 23 C 0.028 3.972 24 O -0.305 6.305 25 C -0.065 4.065 26 C 0.080 3.920 27 F -0.111 7.111 28 C -0.133 4.133 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.250 0.750 41 H 0.160 0.840 42 H 0.164 0.836 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.107 0.893 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -14.165 6.025 8.273 17.475 hybrid contribution 0.742 -0.663 -1.200 1.559 sum -13.422 5.361 7.073 16.091 Atomic orbital electron populations 1.22351 0.98856 0.99358 1.02088 1.21042 0.92651 0.86669 0.98798 1.44232 1.74545 1.11428 1.01980 1.18656 1.39607 0.96737 0.85504 0.90590 1.25496 0.97267 0.97807 0.95199 1.69878 1.44214 1.41715 0.97491 0.86930 0.81213 0.83531 0.77524 1.21507 1.23172 1.19173 1.20799 0.90593 0.97426 0.86551 0.90329 1.22230 0.99908 1.00361 0.99640 1.21998 0.87497 0.97324 0.94990 1.45919 1.10627 1.59086 1.19223 1.18099 0.82631 0.79397 0.85952 1.90736 1.83020 1.51145 1.18037 1.19919 0.95370 1.01120 0.93925 1.21341 0.91008 0.96337 1.00618 1.20821 0.99712 0.96580 0.92769 1.19829 0.93061 1.01781 0.96209 1.21141 0.84127 0.99657 0.92293 1.87826 1.20494 1.81140 1.41054 1.22769 0.88236 0.96678 0.98791 1.17187 0.93788 1.00470 0.80514 1.91534 1.95856 1.87013 1.36659 1.21431 0.99516 0.97879 0.94451 0.93026 0.92330 0.94743 0.93490 0.94208 0.92653 0.92090 0.93352 0.93203 0.92096 0.91836 0.74980 0.83983 0.83603 0.91295 0.91239 0.89322 0.93827 0.93799 0.83294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.19 9.83 37.15 0.37 -2.83 16 2 C 0.13 2.74 4.70 -4.05 -0.02 2.72 16 3 N -0.60 -12.58 1.42 -165.66 -0.23 -12.81 16 4 C -0.28 -6.91 9.50 -15.06 -0.14 -7.05 16 5 H 0.08 2.01 8.06 -52.49 -0.42 1.59 16 6 C 0.04 1.19 5.29 -17.43 -0.09 1.10 16 7 N -0.89 -25.72 13.97 55.49 0.78 -24.95 16 8 Si 0.88 21.36 25.23 -169.99 -4.29 17.07 16 9 H -0.29 -6.95 6.66 56.52 0.38 -6.57 16 10 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 C 0.15 2.71 2.87 -67.93 -0.19 2.51 16 13 H 0.08 1.40 7.89 -51.93 -0.41 0.99 16 14 C -0.16 -2.60 9.18 37.16 0.34 -2.25 16 15 C 0.11 1.75 4.33 -4.04 -0.02 1.73 16 16 N -0.70 -11.50 3.94 -61.24 -0.24 -11.75 16 17 C 0.55 9.24 7.53 -12.33 -0.09 9.15 16 18 O -0.55 -10.44 16.35 5.32 0.09 -10.35 16 19 C -0.10 -1.47 5.87 -104.97 -0.62 -2.09 16 20 C -0.07 -0.96 9.59 -39.18 -0.38 -1.34 16 21 C -0.08 -0.94 9.36 -39.65 -0.37 -1.31 16 22 C -0.11 -1.30 5.89 -104.47 -0.62 -1.91 16 23 C 0.10 1.04 5.90 36.00 0.21 1.25 16 24 O -0.39 -3.75 9.17 -35.23 -0.32 -4.07 16 25 C 0.03 0.20 11.01 101.05 1.11 1.32 16 26 C 0.10 1.37 7.24 -39.47 -0.29 1.08 16 27 F -0.13 -1.91 16.79 2.25 0.04 -1.87 16 28 C -0.11 -1.64 9.52 -39.11 -0.37 -2.01 16 29 H 0.05 0.95 4.89 -51.93 -0.25 0.70 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.03 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.05 1.08 3.44 -51.93 -0.18 0.90 16 33 H 0.04 0.75 6.43 -51.93 -0.33 0.41 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 35 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.79 6.66 -51.93 -0.35 0.44 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 1.09 6.96 -51.93 -0.36 0.73 16 40 H 0.41 7.02 5.92 -40.82 -0.24 6.78 16 41 H 0.14 1.75 7.65 -52.49 -0.40 1.35 16 42 H 0.15 1.48 6.99 -52.48 -0.37 1.11 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 48 H 0.15 2.23 6.40 -52.49 -0.34 1.89 16 LS Contribution 386.38 15.07 5.82 5.82 Total: -1.00 -29.68 386.38 -6.57 -36.25 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -7.04 Total: 6.59 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -1.17 Total: 0.07 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: 0.30 Total: -49.50 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.24 Total: -14.42 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.29 Total: 17.07 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.68 -6.57 -36.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156613259.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.846 kcal (2) G-P(sol) polarization free energy of solvation -29.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds