Wall clock time and date at job start Tue Mar 31 2020 21:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46500 * 109.47079 * 2 1 4 4 C 1.36938 * 120.00294 * 274.58479 * 3 2 1 5 5 H 1.07994 * 120.00295 * 140.38579 * 4 3 2 6 6 C 1.38818 * 119.99560 * 320.38023 * 4 3 2 7 7 N 1.31616 * 119.99667 * 156.48640 * 6 4 3 8 8 Si 1.86794 * 120.00273 * 336.49200 * 6 4 3 9 9 H 1.48503 * 109.47375 * 95.29811 * 8 6 4 10 10 H 1.48502 * 109.46945 * 215.29977 * 8 6 4 11 11 H 1.48503 * 109.47199 * 335.29586 * 8 6 4 12 12 C 1.46503 * 119.99944 * 94.58142 * 3 2 1 13 13 H 1.08999 * 109.47318 * 179.97438 * 12 3 2 14 14 C 1.53002 * 109.47140 * 59.99860 * 12 3 2 15 15 C 1.53004 * 109.47183 * 300.00316 * 12 3 2 16 16 N 1.46507 * 109.46849 * 304.99876 * 15 12 3 17 17 C 1.34777 * 119.99770 * 180.02562 * 16 15 12 18 18 O 1.21552 * 119.99867 * 0.27178 * 17 16 15 19 19 C 1.47850 * 119.99681 * 180.02562 * 17 16 15 20 20 C 1.39595 * 120.12746 * 180.02562 * 19 17 16 21 21 C 1.37943 * 119.89973 * 179.97438 * 20 19 17 22 22 C 1.38340 * 120.17999 * 359.97438 * 21 20 19 23 23 C 1.50696 * 119.86954 * 180.02562 * 22 21 20 24 24 O 1.42899 * 109.47019 * 359.97438 * 23 22 21 25 25 C 1.42901 * 113.99800 * 180.02562 * 24 23 22 26 26 C 1.38560 * 120.26272 * 359.97438 * 22 21 20 27 27 F 1.35097 * 119.94797 * 180.02562 * 26 22 21 28 28 C 1.38206 * 120.09432 * 359.79069 * 26 22 21 29 29 H 1.09001 * 109.47364 * 299.99715 * 1 2 3 30 30 H 1.08995 * 109.47533 * 60.00021 * 1 2 3 31 31 H 1.09011 * 109.47289 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47364 * 240.00285 * 2 1 3 33 33 H 1.08998 * 109.47420 * 120.00504 * 2 1 3 34 34 H 0.96997 * 120.00179 * 180.02562 * 7 6 4 35 35 H 1.09008 * 109.46876 * 60.00243 * 14 12 3 36 36 H 1.08992 * 109.47005 * 179.97438 * 14 12 3 37 37 H 1.08999 * 109.47087 * 300.00229 * 14 12 3 38 38 H 1.08997 * 109.47231 * 185.00225 * 15 12 3 39 39 H 1.09005 * 109.47058 * 64.99836 * 15 12 3 40 40 H 0.97005 * 119.99882 * 0.02562 * 16 15 12 41 41 H 1.07996 * 120.05184 * 359.97438 * 20 19 17 42 42 H 1.08003 * 119.90968 * 179.97438 * 21 20 19 43 43 H 1.09005 * 109.46888 * 120.00005 * 23 22 21 44 44 H 1.08996 * 109.47046 * 239.99589 * 23 22 21 45 45 H 1.08999 * 109.47393 * 179.97438 * 25 24 23 46 46 H 1.08998 * 109.47299 * 299.99663 * 25 24 23 47 47 H 1.09002 * 109.47363 * 59.99822 * 25 24 23 48 48 H 1.07994 * 120.09117 * 180.25426 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1571 2.0584 -1.1821 5 1 1.8866 3.1022 -1.2415 6 6 2.6458 1.4031 -2.3041 7 7 2.3636 1.8576 -3.5066 8 14 3.7037 -0.1238 -2.1072 9 1 2.8507 -1.3345 -2.2163 10 1 4.7385 -0.1496 -3.1719 11 1 4.3630 -0.1010 -0.7767 12 6 2.3580 2.0381 1.2647 13 1 2.7006 3.0536 1.0662 14 6 3.4692 1.2531 1.9647 15 6 1.1211 2.0832 2.1643 16 7 0.0193 2.7303 1.4475 17 6 -1.1777 2.8826 2.0477 18 8 -1.3417 2.4877 3.1855 19 6 -2.2897 3.5351 1.3241 20 6 -3.5306 3.6948 1.9434 21 6 -4.5647 4.3048 1.2641 22 6 -4.3752 4.7589 -0.0288 23 6 -5.5096 5.4247 -0.7642 24 8 -6.6636 5.4664 0.0776 25 6 -7.8027 6.0812 -0.5278 26 6 -3.1462 4.6050 -0.6499 27 9 -2.9681 5.0514 -1.9125 28 6 -2.1011 4.0000 0.0221 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0278 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.7047 1.3995 -4.2906 35 1 4.3504 1.2209 1.3238 36 1 3.7222 1.7420 2.9054 37 1 3.1270 0.2374 2.1632 38 1 1.3492 2.6493 3.0674 39 1 0.8317 1.0678 2.4353 40 1 0.1514 3.0490 0.5409 41 1 -3.6807 3.3415 2.9528 42 1 -5.5249 4.4280 1.7430 43 1 -5.2204 6.4401 -1.0355 44 1 -5.7391 4.8588 -1.6670 45 1 -8.6362 6.0731 0.1745 46 1 -7.5616 7.1103 -0.7942 47 1 -8.0794 5.5288 -1.4258 48 1 -1.1420 3.8837 -0.4606 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156613259.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:38 Heat of formation + Delta-G solvation = -92.928821 kcal Electronic energy + Delta-G solvation = -30166.576709 eV Core-core repulsion = 25943.435928 eV Total energy + Delta-G solvation = -4223.140781 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.03792 -41.32476 -39.89192 -38.85528 -38.29359 -35.54787 -34.08812 -33.34818 -32.68723 -31.65597 -30.43492 -28.81895 -27.25381 -26.43634 -25.54957 -24.09264 -23.84309 -23.32077 -21.38148 -20.91230 -19.29773 -18.76317 -18.09200 -17.57408 -17.38994 -17.19609 -17.17027 -16.82247 -16.48130 -16.40174 -16.34014 -15.87016 -15.39149 -15.28146 -14.88737 -14.61804 -14.45297 -14.23826 -14.14080 -13.96837 -13.86326 -13.67884 -13.43550 -12.95359 -12.90822 -12.81030 -12.77991 -12.62555 -12.56357 -12.52454 -12.16167 -12.13765 -11.79689 -11.40363 -11.35173 -11.05753 -10.87396 -10.54711 -10.15346 -9.98285 -9.72266 -8.72649 -8.16424 -5.54256 -0.43621 0.06178 1.33603 1.44339 1.54089 1.68749 2.20140 2.46440 2.56999 2.62477 3.07026 3.08881 3.33957 3.49782 3.67996 3.81801 3.99700 4.03548 4.12229 4.28604 4.32103 4.35030 4.40182 4.51384 4.54012 4.60073 4.63126 4.69470 4.73223 4.77223 4.81274 4.85071 4.88501 4.90696 4.95912 5.08869 5.12331 5.20345 5.22346 5.28702 5.37043 5.48782 5.57925 5.68527 5.99064 6.10977 6.23569 6.54303 7.03627 7.15827 7.67179 8.12046 9.02107 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014521 B = 0.003197 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.826176 B = 8755.065373 C =10069.699148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.129 3.871 3 N -0.604 5.604 4 C -0.248 4.248 5 H 0.052 0.948 6 C -0.010 4.010 7 N -0.941 5.941 8 Si 0.931 3.069 9 H -0.285 1.285 10 H -0.318 1.318 11 H -0.253 1.253 12 C 0.153 3.847 13 H 0.073 0.927 14 C -0.155 4.155 15 C 0.115 3.885 16 N -0.700 5.700 17 C 0.555 3.445 18 O -0.573 6.573 19 C -0.116 4.116 20 C -0.068 4.068 21 C -0.072 4.072 22 C -0.098 4.098 23 C 0.104 3.896 24 O -0.401 6.401 25 C 0.025 3.975 26 C 0.086 3.914 27 F -0.140 7.140 28 C -0.119 4.119 29 H 0.057 0.943 30 H 0.032 0.968 31 H 0.053 0.947 32 H 0.026 0.974 33 H 0.065 0.935 34 H 0.259 0.741 35 H 0.044 0.956 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.408 0.592 41 H 0.150 0.850 42 H 0.168 0.832 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.103 0.897 46 H 0.052 0.948 47 H 0.050 0.950 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.380 6.131 9.611 19.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.004 3.996 3 N -0.328 5.328 4 C -0.378 4.378 5 H 0.070 0.930 6 C -0.207 4.207 7 N -0.585 5.585 8 Si 0.761 3.239 9 H -0.213 1.213 10 H -0.247 1.247 11 H -0.177 1.177 12 C 0.047 3.953 13 H 0.092 0.908 14 C -0.214 4.214 15 C -0.011 4.011 16 N -0.349 5.349 17 C 0.343 3.657 18 O -0.455 6.455 19 C -0.119 4.119 20 C -0.087 4.087 21 C -0.090 4.090 22 C -0.100 4.100 23 C 0.028 3.972 24 O -0.320 6.320 25 C -0.071 4.071 26 C 0.067 3.933 27 F -0.118 7.118 28 C -0.139 4.139 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.245 0.755 41 H 0.168 0.832 42 H 0.185 0.815 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.121 0.879 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.402 5.783 10.383 19.454 hybrid contribution 0.996 -0.488 -1.772 2.091 sum -14.406 5.295 8.611 17.598 Atomic orbital electron populations 1.22217 0.97899 1.00332 1.01046 1.21110 0.93414 0.86141 0.98928 1.44274 1.74909 1.11593 1.01994 1.18591 1.36674 0.95767 0.86740 0.92992 1.26001 0.99036 1.00617 0.95069 1.69993 1.46531 1.43801 0.98178 0.86061 0.79490 0.80949 0.77403 1.21320 1.24696 1.17685 1.20907 0.91956 0.97176 0.85261 0.90845 1.22135 0.98154 1.00664 1.00492 1.21921 0.86626 0.97499 0.95007 1.45969 1.10931 1.59030 1.19015 1.18320 0.82859 0.78893 0.85650 1.90715 1.83427 1.52377 1.18964 1.19800 0.95605 1.02445 0.94029 1.21488 0.90505 0.95816 1.00916 1.21027 1.00062 0.95465 0.92406 1.20095 0.92980 1.00579 0.96311 1.21158 0.83796 1.00084 0.92139 1.87786 1.21003 1.81694 1.41553 1.22983 0.87514 0.97097 0.99495 1.17293 0.94418 1.01165 0.80412 1.91512 1.95966 1.87188 1.37154 1.21315 0.99355 0.98597 0.94639 0.92405 0.94918 0.92791 0.95615 0.91633 0.93162 0.93696 0.90168 0.92607 0.90487 0.92026 0.75454 0.83184 0.81504 0.90183 0.90514 0.87863 0.92905 0.93086 0.84712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.78 9.83 71.98 0.71 -5.07 16 2 C 0.13 5.09 4.70 86.38 0.41 5.50 16 3 N -0.60 -24.93 1.42 -678.03 -0.96 -25.89 16 4 C -0.25 -12.56 9.50 84.03 0.80 -11.76 16 5 H 0.05 2.86 8.06 -2.91 -0.02 2.83 16 6 C -0.01 -0.54 5.29 84.86 0.45 -0.09 16 7 N -0.94 -56.10 13.97 21.65 0.30 -55.80 16 8 Si 0.93 44.52 25.23 68.60 1.73 46.26 16 9 H -0.29 -13.43 6.66 99.48 0.66 -12.77 16 10 H -0.32 -15.80 7.11 99.48 0.71 -15.10 16 11 H -0.25 -11.36 7.11 99.48 0.71 -10.65 16 12 C 0.15 5.15 2.87 44.99 0.13 5.28 16 13 H 0.07 2.55 7.89 -2.39 -0.02 2.53 16 14 C -0.16 -4.52 9.18 71.98 0.66 -3.86 16 15 C 0.11 3.53 4.33 86.38 0.37 3.90 16 16 N -0.70 -22.76 3.94 -465.94 -1.84 -24.59 16 17 C 0.56 18.23 7.53 86.79 0.65 18.88 16 18 O -0.57 -21.11 16.35 -3.88 -0.06 -21.17 16 19 C -0.12 -3.36 5.87 -20.09 -0.12 -3.48 16 20 C -0.07 -1.68 9.59 22.53 0.22 -1.46 16 21 C -0.07 -1.53 9.36 22.22 0.21 -1.32 16 22 C -0.10 -2.24 5.89 -19.76 -0.12 -2.35 16 23 C 0.10 1.88 5.90 71.23 0.42 2.30 16 24 O -0.40 -6.79 9.17 -148.98 -1.37 -8.16 16 25 C 0.02 0.26 11.01 113.37 1.25 1.51 16 26 C 0.09 2.35 7.24 22.34 0.16 2.52 16 27 F -0.14 -4.06 16.79 44.97 0.75 -3.31 16 28 C -0.12 -3.51 9.52 22.57 0.21 -3.30 16 29 H 0.06 2.06 4.89 -2.39 -0.01 2.04 16 30 H 0.03 1.35 8.14 -2.39 -0.02 1.34 16 31 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.03 1.15 3.44 -2.39 -0.01 1.14 16 33 H 0.07 2.27 6.43 -2.39 -0.02 2.25 16 34 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 35 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.05 1.56 6.66 -2.39 -0.02 1.55 16 38 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.06 1.96 6.96 -2.38 -0.02 1.94 16 40 H 0.41 14.14 5.92 -92.70 -0.55 13.60 16 41 H 0.15 3.45 7.65 -2.91 -0.02 3.42 16 42 H 0.17 2.89 6.99 -2.91 -0.02 2.87 16 43 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 44 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 48 H 0.14 4.28 6.40 -2.91 -0.02 4.26 16 Total: -1.00 -64.10 386.38 5.37 -58.73 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 0.39 Total: 26.75 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 6.41 Total: 7.18 kcal Atomic # 7 Polarization: -103.79 SS G_CDS: -2.49 Total: -106.28 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -1.43 Total: -29.33 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.75 Total: -3.31 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.73 Total: 46.26 kcal Total: -64.10 5.37 -58.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156613259.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.195 kcal (2) G-P(sol) polarization free energy of solvation -64.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds