Wall clock time and date at job start Tue Mar 31 2020 21:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86808 * 119.99677 * 2 1 4 4 H 1.48501 * 109.47178 * 274.64065 * 3 2 1 5 5 H 1.48495 * 109.47162 * 34.64205 * 3 2 1 6 6 H 1.48507 * 109.46695 * 154.64325 * 3 2 1 7 7 C 1.40026 * 120.00464 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00452 * 196.99116 * 7 2 1 9 9 C 1.41559 * 119.99549 * 16.98849 * 7 2 1 10 10 C 1.41185 * 120.98658 * 203.28953 * 9 7 2 11 11 C 1.36566 * 119.14213 * 180.02562 * 10 9 7 12 12 N 1.32089 * 121.26891 * 0.02562 * 11 10 9 13 13 C 1.32533 * 122.21857 * 359.97438 * 12 11 10 14 14 N 1.39081 * 119.65946 * 179.97438 * 13 12 11 15 15 C 1.46961 * 110.99647 * 359.97438 * 14 13 12 16 16 C 1.53056 * 109.36309 * 183.19063 * 15 14 13 17 17 N 1.46960 * 109.36384 * 301.60017 * 16 15 14 18 18 C 1.46899 * 111.00217 * 183.18534 * 17 16 15 19 19 C 1.50698 * 109.47205 * 170.00139 * 18 17 16 20 20 C 1.38307 * 119.96396 * 90.00301 * 19 18 17 21 21 C 1.38264 * 120.15059 * 180.02562 * 20 19 18 22 22 C 1.38132 * 120.07368 * 359.97438 * 21 20 19 23 23 C 1.38893 * 119.92285 * 359.97438 * 22 21 20 24 24 N 1.39672 * 120.06973 * 179.97438 * 23 22 21 25 25 C 1.38084 * 119.96090 * 269.72592 * 19 18 17 26 26 C 1.46963 * 110.87767 * 59.31876 * 17 16 15 27 27 C 1.46950 * 111.00271 * 123.79730 * 14 13 12 28 28 C 1.38749 * 120.68354 * 0.25519 * 13 12 11 29 29 H 0.97003 * 120.00236 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.43331 * 0.04605 * 10 9 7 31 31 H 1.08000 * 119.36238 * 179.97438 * 11 10 9 32 32 H 1.08994 * 109.48843 * 63.22730 * 15 14 13 33 33 H 1.09000 * 109.50660 * 303.16596 * 15 14 13 34 34 H 1.08995 * 109.49127 * 181.63439 * 16 15 14 35 35 H 1.09002 * 109.48980 * 61.56184 * 16 15 14 36 36 H 1.09003 * 109.46650 * 50.00027 * 18 17 16 37 37 H 1.09001 * 109.47065 * 290.00141 * 18 17 16 38 38 H 1.07996 * 119.92325 * 359.97438 * 20 19 18 39 39 H 1.07995 * 119.96484 * 180.02562 * 21 20 19 40 40 H 1.08000 * 120.03378 * 180.02562 * 22 21 20 41 41 H 0.96999 * 120.00496 * 0.02562 * 24 23 22 42 42 H 0.97003 * 119.99639 * 180.02562 * 24 23 22 43 43 H 1.08002 * 120.03791 * 0.02562 * 25 19 18 44 44 H 1.09002 * 109.49046 * 60.65391 * 26 17 16 45 45 H 1.09009 * 109.48622 * 180.71071 * 26 17 16 46 46 H 1.08998 * 109.49056 * 296.77962 * 27 14 13 47 47 H 1.08999 * 109.48874 * 56.82279 * 27 14 13 48 48 H 1.08000 * 120.66599 * 179.72277 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6179 0.0000 4 1 2.3908 2.1032 -1.3955 5 1 1.4913 2.6224 0.7958 6 1 3.5846 1.4139 0.5996 7 6 2.0077 -1.2126 -0.0005 8 1 3.0523 -1.2331 0.2728 9 6 1.3462 -2.4116 -0.3593 10 6 1.8273 -3.6655 0.0763 11 6 1.1600 -4.7985 -0.2926 12 7 0.0772 -4.7416 -1.0470 13 6 -0.4195 -3.5934 -1.4847 14 7 -1.5627 -3.5955 -2.2768 15 6 -2.0457 -4.9653 -2.5007 16 6 -3.2543 -4.9302 -3.4392 17 7 -4.3073 -4.0937 -2.8464 18 6 -5.5147 -4.0959 -3.6831 19 6 -6.6455 -3.4382 -2.9349 20 6 -6.8489 -2.0750 -3.0493 21 6 -7.8849 -1.4675 -2.3641 22 6 -8.7208 -2.2210 -1.5631 23 6 -8.5199 -3.5904 -1.4469 24 7 -9.3630 -4.3551 -0.6374 25 6 -7.4809 -4.1982 -2.1404 26 6 -3.8241 -2.7240 -2.6225 27 6 -2.6154 -2.7587 -1.6844 28 6 0.1926 -2.3898 -1.1658 29 1 -0.4850 0.8401 0.0004 30 1 2.7113 -3.7279 0.6934 31 1 1.5251 -5.7595 0.0383 32 1 -2.3375 -5.4082 -1.5485 33 1 -1.2525 -5.5618 -2.9515 34 1 -3.6321 -5.9423 -3.5836 35 1 -2.9561 -4.5122 -4.4007 36 1 -5.7876 -5.1232 -3.9244 37 1 -5.3198 -3.5458 -4.6038 38 1 -6.1965 -1.4835 -3.6745 39 1 -8.0412 -0.4029 -2.4559 40 1 -9.5300 -1.7459 -1.0285 41 1 -10.0899 -3.9301 -0.1559 42 1 -9.2215 -5.3114 -0.5567 43 1 -7.3240 -5.2634 -2.0548 44 1 -3.5325 -2.2810 -3.5748 45 1 -4.6175 -2.1277 -2.1716 46 1 -2.9137 -3.1762 -0.7228 47 1 -2.2373 -1.7467 -1.5399 48 1 -0.2098 -1.4546 -1.5263 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158481629.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:30 Heat of formation + Delta-G solvation = 72.919738 kcal Electronic energy + Delta-G solvation = -28690.606886 eV Core-core repulsion = 24937.719814 eV Total energy + Delta-G solvation = -3752.887072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.86839 -39.17553 -37.77481 -35.45692 -34.31171 -33.86359 -31.59589 -30.86644 -30.23570 -29.12937 -28.55532 -26.63174 -25.96015 -23.93398 -23.42007 -22.27239 -21.27998 -21.00358 -20.64189 -19.29531 -17.62103 -17.01049 -16.80317 -16.06702 -15.88000 -15.52645 -14.95720 -14.73875 -14.62590 -14.52799 -14.22763 -13.99744 -13.81260 -13.64961 -13.29776 -13.14977 -12.86457 -12.66001 -12.61821 -12.11641 -11.82324 -11.68231 -11.46481 -11.31213 -11.21867 -11.06014 -10.92175 -10.88711 -10.63144 -10.46841 -10.39770 -10.19391 -9.88577 -9.40817 -8.82343 -8.78542 -8.15030 -8.02303 -7.91247 -7.59779 -6.95296 -6.74294 -4.57231 1.38287 1.60080 2.74596 2.86505 3.04032 3.07397 3.26121 3.69318 3.76970 3.87131 4.27005 4.42888 4.72284 4.75326 4.89331 5.13610 5.18412 5.27106 5.40804 5.42052 5.48961 5.59145 5.64122 5.70476 5.74917 5.80799 5.86269 5.95881 5.96646 6.02176 6.17145 6.26948 6.40491 6.48555 6.51129 6.57848 6.67854 6.68654 6.83187 6.84185 6.94020 7.08074 7.18142 7.20882 7.26694 7.38240 7.48427 7.59658 7.63365 7.77887 7.94901 8.27678 8.62312 8.78327 8.81436 9.62524 10.08924 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012379 B = 0.002848 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.378947 B = 9828.628838 C =11196.216488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.079 3.921 3 Si 0.911 3.089 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.455 4.455 8 H 0.081 0.919 9 C 0.138 3.862 10 C -0.284 4.284 11 C 0.116 3.884 12 N -0.603 5.603 13 C 0.291 3.709 14 N -0.479 5.479 15 C 0.078 3.922 16 C 0.056 3.944 17 N -0.533 5.533 18 C 0.092 3.908 19 C -0.026 4.026 20 C -0.171 4.171 21 C -0.073 4.073 22 C -0.202 4.202 23 C 0.211 3.789 24 N -0.882 5.882 25 C -0.175 4.175 26 C 0.057 3.943 27 C 0.068 3.932 28 C -0.222 4.222 29 H 0.282 0.718 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.048 0.952 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.038 0.962 36 H 0.080 0.920 37 H 0.043 0.957 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.396 0.604 42 H 0.397 0.603 43 H 0.119 0.881 44 H 0.039 0.961 45 H 0.084 0.916 46 H 0.042 0.958 47 H 0.094 0.906 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.703 -3.602 -4.964 17.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.486 4.486 8 H 0.099 0.901 9 C 0.129 3.871 10 C -0.308 4.308 11 C -0.038 4.038 12 N -0.323 5.323 13 C 0.066 3.934 14 N -0.198 5.198 15 C -0.051 4.051 16 C -0.072 4.072 17 N -0.257 5.257 18 C -0.035 4.035 19 C -0.027 4.027 20 C -0.191 4.191 21 C -0.091 4.091 22 C -0.225 4.225 23 C 0.107 3.893 24 N -0.421 5.421 25 C -0.198 4.198 26 C -0.071 4.071 27 C -0.059 4.059 28 C -0.247 4.247 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.136 0.864 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.098 0.902 37 H 0.061 0.939 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.223 0.777 42 H 0.225 0.775 43 H 0.137 0.863 44 H 0.058 0.942 45 H 0.102 0.898 46 H 0.060 0.940 47 H 0.112 0.888 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.342 -4.215 -5.243 18.601 hybrid contribution 0.633 1.389 0.548 1.622 sum -16.709 -2.826 -4.695 17.585 Atomic orbital electron populations 1.69777 1.07683 1.29402 1.34000 1.25945 0.94759 1.01438 0.91925 0.86261 0.80590 0.80409 0.79265 1.19204 1.20172 1.18508 1.19605 0.97896 0.90821 1.40235 0.90089 1.17698 0.90204 0.92175 0.87005 1.21571 1.05184 0.94024 1.09997 1.21331 0.91504 0.96673 0.94272 1.67165 1.17049 1.28533 1.19548 1.19392 0.91981 0.90277 0.91769 1.59463 1.04350 1.11782 1.44234 1.21820 0.94840 0.89709 0.98682 1.22292 0.91398 0.97013 0.96540 1.62192 1.04604 1.11885 1.47060 1.21035 0.88834 1.00287 0.93364 1.19461 0.94315 0.93316 0.95600 1.20837 1.00146 0.94241 1.03904 1.20825 0.94034 0.99205 0.95082 1.20531 1.03786 0.92214 1.05929 1.17762 0.90228 0.90875 0.90399 1.42445 1.35574 1.10324 1.53726 1.20393 0.97374 0.99824 1.02213 1.22295 0.96683 0.89155 0.98966 1.22212 0.89424 0.98826 0.95423 1.21635 1.01442 0.96366 1.05238 0.90699 0.88309 0.86428 0.93345 0.89918 0.90654 0.94334 0.90202 0.93934 0.86559 0.86288 0.86679 0.77677 0.77538 0.86348 0.94230 0.89811 0.94004 0.88786 0.85309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.57 10.92 55.55 0.61 -18.96 16 2 C 0.08 1.93 5.20 -17.34 -0.09 1.84 16 3 Si 0.91 18.25 29.59 -169.99 -5.03 13.22 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.45 -11.89 9.12 -37.65 -0.34 -12.23 16 8 H 0.08 2.03 7.90 -52.49 -0.41 1.62 16 9 C 0.14 3.68 5.61 -106.55 -0.60 3.08 16 10 C -0.28 -7.02 9.85 -39.07 -0.38 -7.41 16 11 C 0.12 2.72 11.10 -18.04 -0.20 2.52 16 12 N -0.60 -14.68 8.68 -12.82 -0.11 -14.79 16 13 C 0.29 7.13 6.40 -154.97 -0.99 6.13 16 14 N -0.48 -10.07 4.73 -173.11 -0.82 -10.89 16 15 C 0.08 1.43 4.79 -3.76 -0.02 1.41 16 16 C 0.06 0.82 5.61 -3.76 -0.02 0.79 16 17 N -0.53 -7.75 4.70 -235.90 -1.11 -8.86 16 18 C 0.09 1.10 5.12 -4.98 -0.03 1.07 16 19 C -0.03 -0.31 4.89 -104.65 -0.51 -0.82 16 20 C -0.17 -1.99 7.91 -39.55 -0.31 -2.31 16 21 C -0.07 -0.79 10.04 -39.61 -0.40 -1.18 16 22 C -0.20 -2.12 9.90 -39.38 -0.39 -2.51 16 23 C 0.21 2.25 6.75 -83.79 -0.57 1.69 16 24 N -0.88 -6.76 9.09 32.41 0.29 -6.46 16 25 C -0.17 -2.03 9.55 -39.38 -0.38 -2.40 16 26 C 0.06 0.90 5.25 -3.77 -0.02 0.88 16 27 C 0.07 1.33 5.37 -3.77 -0.02 1.31 16 28 C -0.22 -5.82 7.91 -38.43 -0.30 -6.13 16 29 H 0.28 6.38 8.29 -40.82 -0.34 6.05 16 30 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 31 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 32 H 0.05 0.97 8.05 -51.93 -0.42 0.55 16 33 H 0.08 1.57 7.82 -51.93 -0.41 1.17 16 34 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 35 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.85 7.97 -51.93 -0.41 0.43 16 37 H 0.04 0.49 8.06 -51.93 -0.42 0.07 16 38 H 0.12 1.27 7.99 -52.49 -0.42 0.86 16 39 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.40 2.29 8.84 -40.82 -0.36 1.93 16 42 H 0.40 2.50 8.84 -40.82 -0.36 2.13 16 43 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 1.26 5.95 -51.92 -0.31 0.95 16 46 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.09 1.97 6.80 -51.93 -0.35 1.61 16 48 H 0.13 3.46 5.32 -52.49 -0.28 3.18 16 LS Contribution 384.01 15.07 5.79 5.79 Total: -1.00 -29.19 384.01 -13.04 -42.23 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -7.09 Total: 12.98 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -5.57 Total: -14.25 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -1.14 Total: -59.97 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.19 -13.04 -42.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158481629.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.154 kcal (2) G-P(sol) polarization free energy of solvation -29.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds