Wall clock time and date at job start Tue Mar 31 2020 21:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86808 * 119.99677 * 2 1 4 4 H 1.48501 * 109.47178 * 274.64065 * 3 2 1 5 5 H 1.48495 * 109.47162 * 34.64205 * 3 2 1 6 6 H 1.48507 * 109.46695 * 154.64325 * 3 2 1 7 7 C 1.40026 * 120.00464 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00452 * 196.99116 * 7 2 1 9 9 C 1.41559 * 119.99549 * 16.98849 * 7 2 1 10 10 C 1.41185 * 120.98658 * 203.28953 * 9 7 2 11 11 C 1.36566 * 119.14213 * 180.02562 * 10 9 7 12 12 N 1.32089 * 121.26891 * 0.02562 * 11 10 9 13 13 C 1.32533 * 122.21857 * 359.97438 * 12 11 10 14 14 N 1.39081 * 119.65946 * 179.97438 * 13 12 11 15 15 C 1.46961 * 110.99647 * 359.97438 * 14 13 12 16 16 C 1.53056 * 109.36309 * 183.19063 * 15 14 13 17 17 N 1.46960 * 109.36384 * 301.60017 * 16 15 14 18 18 C 1.46899 * 111.00217 * 183.18534 * 17 16 15 19 19 C 1.50698 * 109.47205 * 170.00139 * 18 17 16 20 20 C 1.38307 * 119.96396 * 90.00301 * 19 18 17 21 21 C 1.38264 * 120.15059 * 180.02562 * 20 19 18 22 22 C 1.38132 * 120.07368 * 359.97438 * 21 20 19 23 23 C 1.38893 * 119.92285 * 359.97438 * 22 21 20 24 24 N 1.39672 * 120.06973 * 179.97438 * 23 22 21 25 25 C 1.38084 * 119.96090 * 269.72592 * 19 18 17 26 26 C 1.46963 * 110.87767 * 59.31876 * 17 16 15 27 27 C 1.46950 * 111.00271 * 123.79730 * 14 13 12 28 28 C 1.38749 * 120.68354 * 0.25519 * 13 12 11 29 29 H 0.97003 * 120.00236 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.43331 * 0.04605 * 10 9 7 31 31 H 1.08000 * 119.36238 * 179.97438 * 11 10 9 32 32 H 1.08994 * 109.48843 * 63.22730 * 15 14 13 33 33 H 1.09000 * 109.50660 * 303.16596 * 15 14 13 34 34 H 1.08995 * 109.49127 * 181.63439 * 16 15 14 35 35 H 1.09002 * 109.48980 * 61.56184 * 16 15 14 36 36 H 1.09003 * 109.46650 * 50.00027 * 18 17 16 37 37 H 1.09001 * 109.47065 * 290.00141 * 18 17 16 38 38 H 1.07996 * 119.92325 * 359.97438 * 20 19 18 39 39 H 1.07995 * 119.96484 * 180.02562 * 21 20 19 40 40 H 1.08000 * 120.03378 * 180.02562 * 22 21 20 41 41 H 0.96999 * 120.00496 * 0.02562 * 24 23 22 42 42 H 0.97003 * 119.99639 * 180.02562 * 24 23 22 43 43 H 1.08002 * 120.03791 * 0.02562 * 25 19 18 44 44 H 1.09002 * 109.49046 * 60.65391 * 26 17 16 45 45 H 1.09009 * 109.48622 * 180.71071 * 26 17 16 46 46 H 1.08998 * 109.49056 * 296.77962 * 27 14 13 47 47 H 1.08999 * 109.48874 * 56.82279 * 27 14 13 48 48 H 1.08000 * 120.66599 * 179.72277 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6179 0.0000 4 1 2.3908 2.1032 -1.3955 5 1 1.4913 2.6224 0.7958 6 1 3.5846 1.4139 0.5996 7 6 2.0077 -1.2126 -0.0005 8 1 3.0523 -1.2331 0.2728 9 6 1.3462 -2.4116 -0.3593 10 6 1.8273 -3.6655 0.0763 11 6 1.1600 -4.7985 -0.2926 12 7 0.0772 -4.7416 -1.0470 13 6 -0.4195 -3.5934 -1.4847 14 7 -1.5627 -3.5955 -2.2768 15 6 -2.0457 -4.9653 -2.5007 16 6 -3.2543 -4.9302 -3.4392 17 7 -4.3073 -4.0937 -2.8464 18 6 -5.5147 -4.0959 -3.6831 19 6 -6.6455 -3.4382 -2.9349 20 6 -6.8489 -2.0750 -3.0493 21 6 -7.8849 -1.4675 -2.3641 22 6 -8.7208 -2.2210 -1.5631 23 6 -8.5199 -3.5904 -1.4469 24 7 -9.3630 -4.3551 -0.6374 25 6 -7.4809 -4.1982 -2.1404 26 6 -3.8241 -2.7240 -2.6225 27 6 -2.6154 -2.7587 -1.6844 28 6 0.1926 -2.3898 -1.1658 29 1 -0.4850 0.8401 0.0004 30 1 2.7113 -3.7279 0.6934 31 1 1.5251 -5.7595 0.0383 32 1 -2.3375 -5.4082 -1.5485 33 1 -1.2525 -5.5618 -2.9515 34 1 -3.6321 -5.9423 -3.5836 35 1 -2.9561 -4.5122 -4.4007 36 1 -5.7876 -5.1232 -3.9244 37 1 -5.3198 -3.5458 -4.6038 38 1 -6.1965 -1.4835 -3.6745 39 1 -8.0412 -0.4029 -2.4559 40 1 -9.5300 -1.7459 -1.0285 41 1 -10.0899 -3.9301 -0.1559 42 1 -9.2215 -5.3114 -0.5567 43 1 -7.3240 -5.2634 -2.0548 44 1 -3.5325 -2.2810 -3.5748 45 1 -4.6175 -2.1277 -2.1716 46 1 -2.9137 -3.1762 -0.7228 47 1 -2.2373 -1.7467 -1.5399 48 1 -0.2098 -1.4546 -1.5263 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158481629.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:29 Heat of formation + Delta-G solvation = 55.233840 kcal Electronic energy + Delta-G solvation = -28691.373804 eV Core-core repulsion = 24937.719814 eV Total energy + Delta-G solvation = -3753.653990 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.21975 -40.38670 -39.24310 -36.79646 -35.86020 -35.07770 -32.69528 -32.55524 -31.79546 -30.64805 -29.43759 -28.06713 -27.73995 -25.18423 -24.88439 -23.29102 -22.94362 -22.45056 -21.79751 -20.78147 -19.44552 -17.83425 -17.71279 -17.51167 -17.20517 -16.72844 -16.45468 -16.19872 -16.14812 -15.95739 -15.63132 -15.47815 -14.99711 -14.78783 -14.66332 -14.43630 -14.37360 -13.92941 -13.88048 -13.61098 -13.21328 -13.06802 -12.96552 -12.76794 -12.66329 -12.39519 -12.27310 -12.09100 -11.96190 -11.90007 -11.80713 -11.53442 -11.35772 -11.24761 -10.55413 -9.97216 -9.86022 -9.67610 -9.29091 -8.80714 -8.59796 -8.34368 -6.55754 0.54106 0.77508 0.87369 1.00396 1.38613 1.52391 1.55356 2.18300 2.65121 2.78278 2.96199 3.08725 3.24875 3.69693 3.83391 3.86926 4.02867 4.07814 4.16668 4.23814 4.33668 4.34851 4.44983 4.50657 4.58125 4.61833 4.70386 4.73995 4.81048 4.82974 4.91883 4.93070 4.94761 5.06798 5.07428 5.13027 5.17410 5.24739 5.29654 5.47472 5.55364 5.69450 5.78894 5.83113 5.94724 5.99059 6.03121 6.09767 6.14539 6.35306 6.67259 6.70650 6.83067 6.86759 7.05159 7.70614 8.25347 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012379 B = 0.002848 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.378947 B = 9828.628838 C =11196.216488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.039 3.961 3 Si 0.986 3.014 4 H -0.263 1.263 5 H -0.265 1.265 6 H -0.257 1.257 7 C -0.486 4.486 8 H 0.083 0.917 9 C 0.108 3.892 10 C -0.301 4.301 11 C 0.115 3.885 12 N -0.610 5.610 13 C 0.289 3.711 14 N -0.482 5.482 15 C 0.082 3.918 16 C 0.065 3.935 17 N -0.541 5.541 18 C 0.097 3.903 19 C -0.038 4.038 20 C -0.187 4.187 21 C -0.080 4.080 22 C -0.211 4.211 23 C 0.205 3.795 24 N -0.872 5.872 25 C -0.190 4.190 26 C 0.072 3.928 27 C 0.077 3.923 28 C -0.247 4.247 29 H 0.291 0.709 30 H 0.112 0.888 31 H 0.154 0.846 32 H 0.029 0.971 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.043 0.957 36 H 0.097 0.903 37 H 0.050 0.950 38 H 0.118 0.882 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.405 0.595 42 H 0.404 0.596 43 H 0.124 0.876 44 H 0.043 0.957 45 H 0.092 0.908 46 H 0.019 0.981 47 H 0.072 0.928 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.935 -3.541 -5.409 19.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.179 4.179 3 Si 0.806 3.194 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.180 1.180 7 C -0.516 4.516 8 H 0.101 0.899 9 C 0.100 3.900 10 C -0.325 4.325 11 C -0.038 4.038 12 N -0.330 5.330 13 C 0.063 3.937 14 N -0.201 5.201 15 C -0.046 4.046 16 C -0.063 4.063 17 N -0.266 5.266 18 C -0.030 4.030 19 C -0.039 4.039 20 C -0.208 4.208 21 C -0.098 4.098 22 C -0.234 4.234 23 C 0.100 3.900 24 N -0.412 5.412 25 C -0.213 4.213 26 C -0.056 4.056 27 C -0.050 4.050 28 C -0.272 4.272 29 H 0.102 0.898 30 H 0.130 0.870 31 H 0.172 0.828 32 H 0.048 0.952 33 H 0.094 0.906 34 H 0.123 0.877 35 H 0.062 0.938 36 H 0.116 0.884 37 H 0.068 0.932 38 H 0.136 0.864 39 H 0.153 0.847 40 H 0.151 0.849 41 H 0.235 0.765 42 H 0.233 0.767 43 H 0.142 0.858 44 H 0.061 0.939 45 H 0.110 0.890 46 H 0.037 0.963 47 H 0.090 0.910 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -18.612 -4.188 -5.679 19.905 hybrid contribution 0.931 1.313 0.732 1.768 sum -17.681 -2.875 -4.947 18.584 Atomic orbital electron populations 1.69828 1.09113 1.30918 1.33439 1.26836 0.95544 1.04643 0.90858 0.85129 0.79186 0.75588 0.79451 1.18726 1.18954 1.18034 1.19893 0.98229 0.91871 1.41603 0.89932 1.18130 0.90867 0.93477 0.87553 1.21785 1.06087 0.93882 1.10756 1.21896 0.90781 0.97911 0.93224 1.67311 1.17486 1.28237 1.20000 1.19694 0.92818 0.89901 0.91304 1.59471 1.03965 1.13507 1.43180 1.21842 0.96273 0.87813 0.98628 1.22230 0.89967 0.98794 0.95284 1.62150 1.05335 1.10766 1.48314 1.21069 0.87322 1.01572 0.93019 1.19545 0.94634 0.93614 0.96156 1.20972 1.00828 0.94365 1.04594 1.21097 0.93745 1.00217 0.94756 1.20814 1.04258 0.92360 1.05976 1.17928 0.90325 0.91315 0.90431 1.42435 1.35190 1.10666 1.52897 1.20550 0.97880 1.00245 1.02651 1.22095 0.95003 0.90441 0.98044 1.22098 0.90334 0.97046 0.95478 1.21567 1.02385 0.96491 1.06750 0.89775 0.86961 0.82833 0.95217 0.90589 0.87687 0.93838 0.88435 0.93203 0.86356 0.84672 0.84916 0.76522 0.76696 0.85770 0.93869 0.89031 0.96299 0.90992 0.86785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.36 10.92 21.84 0.24 -41.13 16 2 C 0.04 1.92 5.20 85.29 0.44 2.37 16 3 Si 0.99 37.38 29.59 68.60 2.03 39.41 16 4 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 5 H -0.27 -9.49 7.11 99.48 0.71 -8.78 16 6 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 7 C -0.49 -26.06 9.12 23.52 0.21 -25.85 16 8 H 0.08 4.24 7.90 -2.91 -0.02 4.22 16 9 C 0.11 5.98 5.61 -21.12 -0.12 5.86 16 10 C -0.30 -15.17 9.85 22.60 0.22 -14.95 16 11 C 0.12 5.40 11.10 84.26 0.94 6.34 16 12 N -0.61 -30.04 8.68 -194.46 -1.69 -31.73 16 13 C 0.29 14.57 6.40 132.90 0.85 15.42 16 14 N -0.48 -20.73 4.73 -701.58 -3.32 -24.05 16 15 C 0.08 3.01 4.79 86.31 0.41 3.43 16 16 C 0.07 1.80 5.61 86.31 0.48 2.28 16 17 N -0.54 -15.00 4.70 -900.25 -4.23 -19.23 16 18 C 0.10 2.11 5.12 85.56 0.44 2.55 16 19 C -0.04 -0.87 4.89 -19.89 -0.10 -0.97 16 20 C -0.19 -4.16 7.91 22.29 0.18 -3.99 16 21 C -0.08 -1.61 10.04 22.25 0.22 -1.39 16 22 C -0.21 -4.09 9.90 22.40 0.22 -3.87 16 23 C 0.21 4.05 6.75 38.21 0.26 4.31 16 24 N -0.87 -11.71 9.09 -51.37 -0.47 -12.17 16 25 C -0.19 -4.12 9.55 22.40 0.21 -3.91 16 26 C 0.07 2.26 5.25 86.31 0.45 2.71 16 27 C 0.08 3.12 5.37 86.31 0.46 3.58 16 28 C -0.25 -13.50 7.91 23.01 0.18 -13.32 16 29 H 0.29 13.38 8.29 -92.71 -0.77 12.61 16 30 H 0.11 5.18 8.06 -2.91 -0.02 5.15 16 31 H 0.15 5.95 8.06 -2.91 -0.02 5.92 16 32 H 0.03 1.20 8.05 -2.39 -0.02 1.18 16 33 H 0.08 2.87 7.82 -2.39 -0.02 2.85 16 34 H 0.10 2.32 8.07 -2.39 -0.02 2.31 16 35 H 0.04 1.18 8.14 -2.39 -0.02 1.17 16 36 H 0.10 1.79 7.97 -2.39 -0.02 1.77 16 37 H 0.05 1.03 8.06 -2.39 -0.02 1.01 16 38 H 0.12 2.49 7.99 -2.91 -0.02 2.46 16 39 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 40 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 41 H 0.41 3.86 8.84 -92.71 -0.82 3.04 16 42 H 0.40 4.33 8.84 -92.71 -0.82 3.51 16 43 H 0.12 2.44 8.06 -2.91 -0.02 2.42 16 44 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.09 2.73 5.95 -2.38 -0.01 2.72 16 46 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.07 3.19 6.80 -2.39 -0.02 3.17 16 48 H 0.11 6.46 5.32 -2.91 -0.02 6.44 16 Total: -1.00 -64.55 384.01 -2.11 -66.66 By element: Atomic # 1 Polarization: 42.29 SS G_CDS: -0.65 Total: 41.64 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: 5.98 Total: -19.39 kcal Atomic # 7 Polarization: -118.84 SS G_CDS: -9.47 Total: -128.31 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 2.03 Total: 39.41 kcal Total: -64.55 -2.11 -66.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158481629.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.890 kcal (2) G-P(sol) polarization free energy of solvation -64.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds