Wall clock time and date at job start Tue Mar 31 2020 21:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86792 * 120.00432 * 2 1 4 4 H 1.48494 * 109.47243 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47320 * 300.00074 * 3 2 1 6 6 H 1.48506 * 109.47299 * 60.00024 * 3 2 1 7 7 C 1.40031 * 119.99255 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99385 * 194.63028 * 7 2 1 9 9 C 1.41544 * 120.00243 * 14.63130 * 7 2 1 10 10 C 1.41186 * 120.99103 * 203.60922 * 9 7 2 11 11 C 1.36559 * 119.14751 * 179.97438 * 10 9 7 12 12 N 1.32103 * 121.26455 * 359.97401 * 11 10 9 13 13 C 1.32530 * 122.22000 * 0.02785 * 12 11 10 14 14 N 1.39077 * 119.65762 * 179.97438 * 13 12 11 15 15 C 1.46496 * 119.99625 * 179.97438 * 14 13 12 16 16 C 1.53001 * 109.46760 * 176.88046 * 15 14 13 17 17 C 1.50704 * 109.52568 * 59.18376 * 16 15 14 18 18 C 1.38674 * 120.41547 * 243.91307 * 17 16 15 19 19 C 1.38623 * 118.41912 * 179.97438 * 18 17 16 20 20 C 1.38230 * 119.16175 * 359.97438 * 19 18 17 21 21 N 1.31853 * 120.76265 * 359.97438 * 20 19 18 22 22 C 1.31879 * 121.72681 * 359.70429 * 21 20 19 23 23 C 1.53120 * 109.52317 * 299.05404 * 16 15 14 24 24 C 1.53177 * 109.20635 * 297.68651 * 23 16 15 25 25 N 1.46844 * 109.55830 * 300.86198 * 24 23 16 26 26 C 1.46842 * 111.20078 * 61.74106 * 25 24 23 27 27 C 1.53043 * 109.52498 * 298.25813 * 26 25 24 28 28 C 1.38743 * 120.68176 * 0.24694 * 13 12 11 29 29 H 0.97005 * 119.99424 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.42692 * 0.02562 * 10 9 7 31 31 H 1.07995 * 119.37305 * 179.97438 * 11 10 9 32 32 H 0.96993 * 120.00009 * 359.72257 * 14 13 12 33 33 H 1.09001 * 109.47337 * 296.87478 * 15 14 13 34 34 H 1.09003 * 109.47487 * 56.88155 * 15 14 13 35 35 H 1.07997 * 120.78996 * 0.02562 * 18 17 16 36 36 H 1.08001 * 120.41881 * 180.02562 * 19 18 17 37 37 H 1.07999 * 119.61684 * 179.97438 * 20 19 18 38 38 H 1.07998 * 119.62417 * 180.31392 * 22 21 20 39 39 H 1.08999 * 109.50570 * 57.69254 * 23 16 15 40 40 H 1.08998 * 109.50296 * 177.81210 * 23 16 15 41 41 H 1.08998 * 109.44349 * 180.82935 * 24 23 16 42 42 H 1.09006 * 109.43009 * 60.88396 * 24 23 16 43 43 H 1.00895 * 110.99882 * 297.64221 * 25 24 23 44 44 H 1.08999 * 109.46628 * 178.23865 * 26 25 24 45 45 H 1.09003 * 109.45338 * 58.26622 * 26 25 24 46 46 H 1.08995 * 109.49915 * 299.24050 * 27 26 25 47 47 H 1.08997 * 109.50339 * 179.11795 * 27 26 25 48 48 H 1.08000 * 120.66260 * 179.74270 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 3.7015 1.3462 0.0006 5 1 1.8829 2.3964 -1.2125 6 1 1.8829 2.3964 1.2125 7 6 2.0075 -1.2128 -0.0005 8 1 3.0612 -1.2281 0.2357 9 6 1.3341 -2.4185 -0.3107 10 6 1.8270 -3.6629 0.1388 11 6 1.1469 -4.8028 -0.1819 12 7 0.0402 -4.7612 -0.9021 13 6 -0.4685 -3.6227 -1.3508 14 7 -1.6368 -3.6409 -2.1051 15 6 -2.2059 -2.3867 -2.6043 16 6 -3.4356 -2.6907 -3.4625 17 6 -4.4562 -3.4302 -2.6361 18 6 -4.8160 -4.7291 -2.9625 19 6 -5.7585 -5.3705 -2.1738 20 6 -6.3040 -4.6990 -1.0957 21 7 -5.9371 -3.4642 -0.8145 22 6 -5.0391 -2.8255 -1.5388 23 6 -3.0241 -3.5529 -4.6591 24 6 -2.0333 -2.7707 -5.5267 25 7 -2.6605 -1.5259 -5.9886 26 6 -3.0217 -0.6618 -4.8576 27 6 -4.0417 -1.3796 -3.9708 28 6 0.1554 -2.4133 -1.0805 29 1 -0.4849 0.8401 0.0004 30 1 2.7298 -3.7125 0.7294 31 1 1.5209 -5.7566 0.1596 32 1 -2.0727 -4.4843 -2.3037 33 1 -2.4969 -1.7591 -1.7620 34 1 -1.4625 -1.8647 -3.2068 35 1 -4.3719 -5.2293 -3.8104 36 1 -6.0621 -6.3823 -2.3984 37 1 -7.0391 -5.1916 -0.4766 38 1 -4.7600 -1.8162 -1.2748 39 1 -2.5537 -4.4693 -4.3027 40 1 -3.9063 -3.8016 -5.2489 41 1 -1.7491 -3.3755 -6.3878 42 1 -1.1456 -2.5343 -4.9400 43 1 -3.4643 -1.7190 -6.5671 44 1 -3.4552 0.2653 -5.2326 45 1 -2.1291 -0.4353 -4.2742 46 1 -4.9399 -1.5943 -4.5498 47 1 -4.2978 -0.7442 -3.1229 48 1 -0.2572 -1.4860 -1.4498 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162035998.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:34 Heat of formation + Delta-G solvation = 65.085100 kcal Electronic energy + Delta-G solvation = -30010.173196 eV Core-core repulsion = 26256.946389 eV Total energy + Delta-G solvation = -3753.226808 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.99066 -39.05223 -38.23657 -35.18114 -34.05138 -33.21028 -32.22189 -30.89134 -30.48571 -29.77329 -28.12267 -25.91267 -25.53998 -24.29508 -23.97703 -22.27901 -21.96367 -21.51679 -20.53003 -18.93086 -17.73907 -17.39303 -16.30493 -16.16203 -15.75503 -15.57247 -14.94883 -14.80727 -14.49351 -14.35584 -14.08146 -14.00789 -13.97897 -13.60707 -13.28793 -13.15675 -12.73710 -12.69628 -12.60208 -12.50154 -12.22466 -12.15973 -11.58150 -11.38222 -11.36233 -11.19978 -11.11056 -10.80748 -10.65423 -10.38345 -10.16694 -9.86209 -9.79029 -9.44118 -9.38876 -8.94357 -8.88877 -8.43639 -7.95256 -7.83672 -6.78801 -6.39261 -4.53228 1.11467 1.28203 2.82145 3.05270 3.07307 3.10913 3.34982 3.80454 3.90431 4.05586 4.17879 4.37313 4.54935 4.60304 4.74767 4.76119 4.85718 4.95224 5.00071 5.03675 5.16641 5.28298 5.33036 5.45582 5.59932 5.64550 5.70599 5.78934 5.80355 5.83525 5.87081 5.95747 6.01793 6.06379 6.12289 6.18721 6.24312 6.41005 6.69583 6.76798 6.86667 6.93665 6.99277 7.09088 7.31196 7.31486 7.58528 7.88900 7.99543 8.00068 8.17855 8.46217 8.80018 8.87353 8.92981 9.78383 10.15155 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010113 B = 0.004127 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.071909 B = 6783.516868 C = 7619.906656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.079 3.921 3 Si 0.907 3.093 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.455 4.455 8 H 0.079 0.921 9 C 0.150 3.850 10 C -0.302 4.302 11 C 0.129 3.871 12 N -0.623 5.623 13 C 0.384 3.616 14 N -0.738 5.738 15 C 0.155 3.845 16 C -0.023 4.023 17 C -0.112 4.112 18 C -0.078 4.078 19 C -0.172 4.172 20 C 0.088 3.912 21 N -0.481 5.481 22 C 0.112 3.888 23 C -0.145 4.145 24 C 0.054 3.946 25 N -0.683 5.683 26 C 0.052 3.948 27 C -0.140 4.140 28 C -0.276 4.276 29 H 0.278 0.722 30 H 0.096 0.904 31 H 0.117 0.883 32 H 0.385 0.615 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.335 0.665 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.065 0.935 47 H 0.075 0.925 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.498 -2.791 -10.060 15.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.200 1.200 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.142 3.858 10 C -0.327 4.327 11 C -0.023 4.023 12 N -0.346 5.346 13 C 0.156 3.844 14 N -0.374 5.374 15 C 0.030 3.970 16 C -0.024 4.024 17 C -0.114 4.114 18 C -0.104 4.104 19 C -0.192 4.192 20 C -0.068 4.068 21 N -0.189 5.189 22 C -0.045 4.045 23 C -0.185 4.185 24 C -0.075 4.075 25 N -0.310 5.310 26 C -0.078 4.078 27 C -0.179 4.179 28 C -0.303 4.303 29 H 0.089 0.911 30 H 0.114 0.886 31 H 0.134 0.866 32 H 0.219 0.781 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.169 0.831 38 H 0.170 0.830 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.152 0.848 44 H 0.095 0.905 45 H 0.102 0.898 46 H 0.084 0.916 47 H 0.094 0.906 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.909 -2.468 -9.670 15.537 hybrid contribution 0.182 0.163 0.082 0.257 sum -11.727 -2.305 -9.588 15.322 Atomic orbital electron populations 1.69821 1.07561 1.28843 1.34948 1.25921 0.94756 1.01254 0.92051 0.86278 0.81047 0.80931 0.78598 1.18378 1.19619 1.19954 1.19620 0.97029 0.90655 1.41365 0.90311 1.17598 0.90178 0.91959 0.86052 1.21487 1.05143 0.94206 1.11850 1.21198 0.90600 0.96475 0.94029 1.66719 1.17052 1.28558 1.22299 1.18114 0.86187 0.90177 0.89893 1.43981 1.26749 1.06806 1.59911 1.21191 0.92364 0.87261 0.96197 1.19733 0.93402 0.95105 0.94157 1.20752 0.98079 0.95174 0.97423 1.21570 0.95743 0.93980 0.99139 1.22101 0.98688 1.01256 0.97110 1.22723 0.98160 0.90829 0.95132 1.67692 1.12880 1.09477 1.28902 1.22599 0.91613 0.99905 0.90407 1.22384 0.99998 0.99603 0.96469 1.22115 0.97472 0.89724 0.98227 1.60637 1.33320 1.16818 1.20258 1.22132 0.98508 0.95694 0.91436 1.22284 0.99034 0.95620 1.00998 1.21547 1.02629 0.95971 1.10112 0.91061 0.88564 0.86576 0.78148 0.92259 0.91690 0.84790 0.85061 0.83133 0.83021 0.90672 0.91897 0.90753 0.89790 0.84755 0.90520 0.89847 0.91645 0.90630 0.85294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.65 10.80 55.55 0.60 -19.05 16 2 C 0.08 1.94 5.24 -17.34 -0.09 1.85 16 3 Si 0.91 18.31 29.58 -169.99 -5.03 13.28 16 4 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 7 C -0.46 -12.01 9.13 -37.65 -0.34 -12.36 16 8 H 0.08 2.01 7.89 -52.49 -0.41 1.59 16 9 C 0.15 4.04 5.61 -106.56 -0.60 3.45 16 10 C -0.30 -7.56 9.85 -39.07 -0.38 -7.95 16 11 C 0.13 3.08 11.10 -18.04 -0.20 2.88 16 12 N -0.62 -15.25 10.37 -12.82 -0.13 -15.39 16 13 C 0.38 9.17 7.65 -154.98 -1.19 7.99 16 14 N -0.74 -14.03 5.14 -60.48 -0.31 -14.34 16 15 C 0.16 2.51 3.07 -4.04 -0.01 2.49 16 16 C -0.02 -0.27 0.37 -155.53 -0.06 -0.33 16 17 C -0.11 -1.43 3.97 -104.48 -0.42 -1.84 16 18 C -0.08 -0.90 8.90 -39.28 -0.35 -1.25 16 19 C -0.17 -1.88 10.11 -39.44 -0.40 -2.28 16 20 C 0.09 1.09 11.18 -17.55 -0.20 0.89 16 21 N -0.48 -7.16 10.36 -13.25 -0.14 -7.30 16 22 C 0.11 1.60 9.96 -17.55 -0.17 1.43 16 23 C -0.15 -1.56 3.42 -26.58 -0.09 -1.65 16 24 C 0.05 0.61 6.31 -3.76 -0.02 0.59 16 25 N -0.68 -7.17 6.87 -113.74 -0.78 -7.95 16 26 C 0.05 0.55 6.31 -3.83 -0.02 0.53 16 27 C -0.14 -1.45 4.61 -26.64 -0.12 -1.58 16 28 C -0.28 -7.11 8.01 -38.43 -0.31 -7.42 16 29 H 0.28 6.29 8.29 -40.82 -0.34 5.95 16 30 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 31 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 32 H 0.38 6.95 6.93 -40.82 -0.28 6.66 16 33 H 0.06 1.08 7.59 -51.93 -0.39 0.69 16 34 H 0.07 1.12 4.53 -51.93 -0.24 0.88 16 35 H 0.13 1.30 6.07 -52.49 -0.32 0.99 16 36 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 37 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 38 H 0.15 2.11 7.18 -52.49 -0.38 1.73 16 39 H 0.07 0.88 6.31 -51.93 -0.33 0.56 16 40 H 0.06 0.58 7.60 -51.93 -0.39 0.19 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.18 6.49 -51.93 -0.34 0.84 16 43 H 0.34 2.94 8.86 -39.29 -0.35 2.59 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 1.06 6.53 -51.93 -0.34 0.72 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.08 0.79 7.33 -51.93 -0.38 0.41 16 48 H 0.13 3.33 4.77 -52.49 -0.25 3.08 16 LS Contribution 372.26 15.07 5.61 5.61 Total: -1.00 -29.73 372.26 -11.65 -41.39 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: -6.49 Total: 18.30 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -4.98 Total: -14.56 kcal Atomic # 7 Polarization: -63.26 SS G_CDS: -0.76 Total: -64.02 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.73 -11.65 -41.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162035998.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.470 kcal (2) G-P(sol) polarization free energy of solvation -29.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds