Wall clock time and date at job start Tue Mar 31 2020 21:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86792 * 120.00432 * 2 1 4 4 H 1.48494 * 109.47243 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47320 * 300.00074 * 3 2 1 6 6 H 1.48506 * 109.47299 * 60.00024 * 3 2 1 7 7 C 1.40031 * 119.99255 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99385 * 194.63028 * 7 2 1 9 9 C 1.41544 * 120.00243 * 14.63130 * 7 2 1 10 10 C 1.41186 * 120.99103 * 203.60922 * 9 7 2 11 11 C 1.36559 * 119.14751 * 179.97438 * 10 9 7 12 12 N 1.32103 * 121.26455 * 359.97401 * 11 10 9 13 13 C 1.32530 * 122.22000 * 0.02785 * 12 11 10 14 14 N 1.39077 * 119.65762 * 179.97438 * 13 12 11 15 15 C 1.46496 * 119.99625 * 179.97438 * 14 13 12 16 16 C 1.53001 * 109.46760 * 176.88046 * 15 14 13 17 17 C 1.50704 * 109.52568 * 59.18376 * 16 15 14 18 18 C 1.38674 * 120.41547 * 243.91307 * 17 16 15 19 19 C 1.38623 * 118.41912 * 179.97438 * 18 17 16 20 20 C 1.38230 * 119.16175 * 359.97438 * 19 18 17 21 21 N 1.31853 * 120.76265 * 359.97438 * 20 19 18 22 22 C 1.31879 * 121.72681 * 359.70429 * 21 20 19 23 23 C 1.53120 * 109.52317 * 299.05404 * 16 15 14 24 24 C 1.53177 * 109.20635 * 297.68651 * 23 16 15 25 25 N 1.46844 * 109.55830 * 300.86198 * 24 23 16 26 26 C 1.46842 * 111.20078 * 61.74106 * 25 24 23 27 27 C 1.53043 * 109.52498 * 298.25813 * 26 25 24 28 28 C 1.38743 * 120.68176 * 0.24694 * 13 12 11 29 29 H 0.97005 * 119.99424 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.42692 * 0.02562 * 10 9 7 31 31 H 1.07995 * 119.37305 * 179.97438 * 11 10 9 32 32 H 0.96993 * 120.00009 * 359.72257 * 14 13 12 33 33 H 1.09001 * 109.47337 * 296.87478 * 15 14 13 34 34 H 1.09003 * 109.47487 * 56.88155 * 15 14 13 35 35 H 1.07997 * 120.78996 * 0.02562 * 18 17 16 36 36 H 1.08001 * 120.41881 * 180.02562 * 19 18 17 37 37 H 1.07999 * 119.61684 * 179.97438 * 20 19 18 38 38 H 1.07998 * 119.62417 * 180.31392 * 22 21 20 39 39 H 1.08999 * 109.50570 * 57.69254 * 23 16 15 40 40 H 1.08998 * 109.50296 * 177.81210 * 23 16 15 41 41 H 1.08998 * 109.44349 * 180.82935 * 24 23 16 42 42 H 1.09006 * 109.43009 * 60.88396 * 24 23 16 43 43 H 1.00895 * 110.99882 * 297.64221 * 25 24 23 44 44 H 1.08999 * 109.46628 * 178.23865 * 26 25 24 45 45 H 1.09003 * 109.45338 * 58.26622 * 26 25 24 46 46 H 1.08995 * 109.49915 * 299.24050 * 27 26 25 47 47 H 1.08997 * 109.50339 * 179.11795 * 27 26 25 48 48 H 1.08000 * 120.66260 * 179.74270 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 3.7015 1.3462 0.0006 5 1 1.8829 2.3964 -1.2125 6 1 1.8829 2.3964 1.2125 7 6 2.0075 -1.2128 -0.0005 8 1 3.0612 -1.2281 0.2357 9 6 1.3341 -2.4185 -0.3107 10 6 1.8270 -3.6629 0.1388 11 6 1.1469 -4.8028 -0.1819 12 7 0.0402 -4.7612 -0.9021 13 6 -0.4685 -3.6227 -1.3508 14 7 -1.6368 -3.6409 -2.1051 15 6 -2.2059 -2.3867 -2.6043 16 6 -3.4356 -2.6907 -3.4625 17 6 -4.4562 -3.4302 -2.6361 18 6 -4.8160 -4.7291 -2.9625 19 6 -5.7585 -5.3705 -2.1738 20 6 -6.3040 -4.6990 -1.0957 21 7 -5.9371 -3.4642 -0.8145 22 6 -5.0391 -2.8255 -1.5388 23 6 -3.0241 -3.5529 -4.6591 24 6 -2.0333 -2.7707 -5.5267 25 7 -2.6605 -1.5259 -5.9886 26 6 -3.0217 -0.6618 -4.8576 27 6 -4.0417 -1.3796 -3.9708 28 6 0.1554 -2.4133 -1.0805 29 1 -0.4849 0.8401 0.0004 30 1 2.7298 -3.7125 0.7294 31 1 1.5209 -5.7566 0.1596 32 1 -2.0727 -4.4843 -2.3037 33 1 -2.4969 -1.7591 -1.7620 34 1 -1.4625 -1.8647 -3.2068 35 1 -4.3719 -5.2293 -3.8104 36 1 -6.0621 -6.3823 -2.3984 37 1 -7.0391 -5.1916 -0.4766 38 1 -4.7600 -1.8162 -1.2748 39 1 -2.5537 -4.4693 -4.3027 40 1 -3.9063 -3.8016 -5.2489 41 1 -1.7491 -3.3755 -6.3878 42 1 -1.1456 -2.5343 -4.9400 43 1 -3.4643 -1.7190 -6.5671 44 1 -3.4552 0.2653 -5.2326 45 1 -2.1291 -0.4353 -4.2742 46 1 -4.9399 -1.5943 -4.5498 47 1 -4.2978 -0.7442 -3.1229 48 1 -0.2572 -1.4860 -1.4498 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162035998.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:33 Heat of formation + Delta-G solvation = 46.471253 kcal Electronic energy + Delta-G solvation = -30010.980353 eV Core-core repulsion = 26256.946389 eV Total energy + Delta-G solvation = -3754.033965 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.00958 -40.32247 -39.78870 -36.57678 -35.85237 -34.50700 -33.18493 -32.39873 -31.80298 -30.86406 -29.75565 -27.84029 -26.90327 -25.29178 -25.02375 -23.43596 -23.17512 -22.86632 -22.33939 -20.08126 -19.51169 -18.33878 -17.56668 -17.46952 -17.10666 -17.03327 -16.36906 -15.99991 -15.89282 -15.62073 -15.35464 -15.27769 -15.07284 -15.00303 -14.61950 -14.38044 -14.26021 -14.11390 -13.92784 -13.74991 -13.39404 -13.16558 -13.06605 -12.87171 -12.76083 -12.63453 -12.29457 -12.13492 -11.91792 -11.80924 -11.62706 -11.35500 -11.25826 -10.74664 -10.66707 -10.36064 -9.91277 -9.90237 -9.79907 -9.29961 -8.65979 -8.19068 -6.53254 0.15505 0.33828 1.04589 1.14361 1.38163 1.52730 1.58128 2.19450 2.53106 2.82400 2.83729 3.27647 3.46079 3.53253 3.64165 3.78890 3.84576 3.95705 4.01519 4.06285 4.12213 4.26116 4.29458 4.39008 4.40573 4.46195 4.63045 4.68409 4.74756 4.80191 4.85299 4.90684 4.94339 4.96451 4.99137 4.99987 5.08732 5.13415 5.19389 5.21061 5.27297 5.36199 5.38190 5.64377 5.77115 5.99460 6.04516 6.10879 6.34340 6.58171 6.61525 6.90949 6.92377 7.02129 7.07458 7.88291 8.29899 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010113 B = 0.004127 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.071909 B = 6783.516868 C = 7619.906656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.040 3.960 3 Si 0.982 3.018 4 H -0.258 1.258 5 H -0.261 1.261 6 H -0.265 1.265 7 C -0.489 4.489 8 H 0.078 0.922 9 C 0.120 3.880 10 C -0.324 4.324 11 C 0.130 3.870 12 N -0.633 5.633 13 C 0.382 3.618 14 N -0.722 5.722 15 C 0.163 3.837 16 C -0.010 4.010 17 C -0.117 4.117 18 C -0.081 4.081 19 C -0.163 4.163 20 C 0.076 3.924 21 N -0.513 5.513 22 C 0.088 3.912 23 C -0.137 4.137 24 C 0.058 3.942 25 N -0.684 5.684 26 C 0.055 3.945 27 C -0.133 4.133 28 C -0.300 4.300 29 H 0.288 0.712 30 H 0.106 0.894 31 H 0.152 0.848 32 H 0.392 0.608 33 H 0.031 0.969 34 H 0.052 0.948 35 H 0.158 0.842 36 H 0.167 0.833 37 H 0.175 0.825 38 H 0.140 0.860 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.048 0.952 43 H 0.351 0.649 44 H 0.094 0.906 45 H 0.054 0.946 46 H 0.086 0.914 47 H 0.069 0.931 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.748 -3.597 -11.658 17.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.177 4.177 3 Si 0.802 3.198 4 H -0.182 1.182 5 H -0.186 1.186 6 H -0.190 1.190 7 C -0.520 4.520 8 H 0.096 0.904 9 C 0.112 3.888 10 C -0.349 4.349 11 C -0.022 4.022 12 N -0.357 5.357 13 C 0.152 3.848 14 N -0.358 5.358 15 C 0.039 3.961 16 C -0.011 4.011 17 C -0.119 4.119 18 C -0.107 4.107 19 C -0.183 4.183 20 C -0.081 4.081 21 N -0.222 5.222 22 C -0.068 4.068 23 C -0.176 4.176 24 C -0.072 4.072 25 N -0.313 5.313 26 C -0.074 4.074 27 C -0.172 4.172 28 C -0.327 4.327 29 H 0.099 0.901 30 H 0.124 0.876 31 H 0.169 0.831 32 H 0.227 0.773 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.175 0.825 36 H 0.184 0.816 37 H 0.192 0.808 38 H 0.157 0.843 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.067 0.933 43 H 0.170 0.830 44 H 0.112 0.888 45 H 0.072 0.928 46 H 0.105 0.895 47 H 0.087 0.913 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.196 -3.283 -11.291 17.675 hybrid contribution 0.500 0.343 0.604 0.856 sum -12.695 -2.940 -10.687 16.853 Atomic orbital electron populations 1.69870 1.08956 1.30371 1.34434 1.26776 0.95546 1.04391 0.90968 0.85163 0.79441 0.76084 0.79085 1.18179 1.18573 1.19003 1.19888 0.97253 0.91818 1.43036 0.90434 1.18043 0.91010 0.93129 0.86661 1.21674 1.06080 0.94255 1.12912 1.21739 0.89996 0.97570 0.92923 1.66888 1.17518 1.28369 1.22888 1.18371 0.87131 0.89660 0.89635 1.43992 1.25141 1.08168 1.58487 1.21158 0.93799 0.85651 0.95538 1.19613 0.91249 0.96404 0.93853 1.20741 0.98135 0.95949 0.97103 1.21907 0.95664 0.93254 0.99844 1.22488 0.97457 1.02498 0.95839 1.23247 0.98622 0.90185 0.96042 1.67646 1.13676 1.11041 1.29857 1.22564 0.92696 0.99988 0.91580 1.22344 1.00834 0.98634 0.95805 1.22016 0.96453 0.90317 0.98409 1.60575 1.34187 1.16391 1.20157 1.22060 0.97372 0.96623 0.91385 1.22245 0.99469 0.94584 1.00932 1.21522 1.03338 0.96432 1.11430 0.90130 0.87596 0.83067 0.77262 0.95036 0.93025 0.82481 0.81591 0.80756 0.84259 0.91375 0.89001 0.89193 0.93303 0.82978 0.88809 0.92768 0.89542 0.91264 0.86255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.96 10.80 21.84 0.24 -41.73 16 2 C 0.04 2.01 5.24 85.29 0.45 2.45 16 3 Si 0.98 37.96 29.58 68.60 2.03 39.99 16 4 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 5 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 6 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 7 C -0.49 -26.76 9.13 23.52 0.21 -26.55 16 8 H 0.08 4.09 7.89 -2.91 -0.02 4.07 16 9 C 0.12 6.70 5.61 -21.12 -0.12 6.58 16 10 C -0.32 -16.64 9.85 22.60 0.22 -16.42 16 11 C 0.13 6.18 11.10 84.26 0.94 7.12 16 12 N -0.63 -31.10 10.37 -194.47 -2.02 -33.11 16 13 C 0.38 18.74 7.65 132.90 1.02 19.76 16 14 N -0.72 -28.07 5.14 -345.25 -1.77 -29.84 16 15 C 0.16 5.53 3.07 86.38 0.26 5.79 16 16 C -0.01 -0.23 0.37 -52.84 -0.02 -0.25 16 17 C -0.12 -2.87 3.97 -19.77 -0.08 -2.95 16 18 C -0.08 -1.64 8.90 22.47 0.20 -1.44 16 19 C -0.16 -3.07 10.11 22.36 0.23 -2.85 16 20 C 0.08 1.73 11.18 84.69 0.95 2.68 16 21 N -0.51 -15.22 10.36 -195.85 -2.03 -17.25 16 22 C 0.09 2.57 9.96 84.67 0.84 3.41 16 23 C -0.14 -2.67 3.42 30.69 0.10 -2.57 16 24 C 0.06 1.25 6.31 86.37 0.54 1.79 16 25 N -0.68 -13.36 6.87 -513.75 -3.53 -16.89 16 26 C 0.06 1.16 6.31 86.33 0.54 1.70 16 27 C -0.13 -2.67 4.61 30.65 0.14 -2.53 16 28 C -0.30 -16.22 8.01 23.01 0.18 -16.04 16 29 H 0.29 13.38 8.29 -92.70 -0.77 12.61 16 30 H 0.11 5.05 8.06 -2.91 -0.02 5.03 16 31 H 0.15 5.96 8.06 -2.91 -0.02 5.93 16 32 H 0.39 14.02 6.93 -92.71 -0.64 13.38 16 33 H 0.03 1.24 7.59 -2.39 -0.02 1.22 16 34 H 0.05 1.91 4.53 -2.39 -0.01 1.90 16 35 H 0.16 2.43 6.07 -2.91 -0.02 2.41 16 36 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 37 H 0.18 2.94 8.06 -2.91 -0.02 2.91 16 38 H 0.14 4.18 7.18 -2.91 -0.02 4.16 16 39 H 0.07 1.46 6.31 -2.39 -0.02 1.44 16 40 H 0.09 1.33 7.60 -2.39 -0.02 1.31 16 41 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.05 1.41 6.49 -2.38 -0.02 1.39 16 43 H 0.35 5.14 8.86 -89.70 -0.79 4.34 16 44 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.05 1.46 6.53 -2.39 -0.02 1.44 16 46 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.07 1.49 7.33 -2.39 -0.02 1.48 16 48 H 0.12 6.55 4.77 -2.91 -0.01 6.54 16 Total: -1.00 -67.23 372.26 -0.88 -68.11 By element: Atomic # 1 Polarization: 51.46 SS G_CDS: -0.42 Total: 51.04 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: 6.62 Total: -20.31 kcal Atomic # 7 Polarization: -129.72 SS G_CDS: -9.11 Total: -138.83 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.99 kcal Total: -67.23 -0.88 -68.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162035998.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.582 kcal (2) G-P(sol) polarization free energy of solvation -67.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds