Wall clock time and date at job start Tue Mar 31 2020 21:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36094 * 117.00017 * 2 1 4 4 C 1.38533 * 120.00042 * 0.25956 * 3 2 1 5 5 C 1.38203 * 120.07256 * 180.29173 * 4 3 2 6 6 C 1.50706 * 119.96727 * 179.72318 * 5 4 3 7 7 C 1.50698 * 109.47294 * 264.73190 * 6 5 4 8 8 H 1.08005 * 119.99819 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00046 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99944 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99979 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47454 * 59.99696 * 11 9 7 13 13 H 1.48506 * 109.47297 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46926 * 299.99488 * 11 9 7 15 15 C 1.38863 * 120.07005 * 359.45067 * 5 4 3 16 16 N 1.39925 * 120.00039 * 180.24912 * 15 5 4 17 17 C 1.46505 * 119.99711 * 180.02562 * 16 15 5 18 18 C 1.52998 * 109.46997 * 180.02562 * 17 16 15 19 19 H 1.09004 * 109.88044 * 295.70680 * 18 17 16 20 20 C 1.54320 * 109.88837 * 174.67001 * 18 17 16 21 21 C 1.55397 * 102.90006 * 218.40773 * 20 18 17 22 22 H 1.08997 * 110.90660 * 277.38065 * 21 20 18 23 23 F 1.39895 * 111.02602 * 153.63447 * 21 20 18 24 24 C 1.54912 * 101.73999 * 35.47912 * 21 20 18 25 25 N 1.47444 * 109.88657 * 56.73414 * 18 17 16 26 26 C 1.38824 * 119.99590 * 0.27692 * 15 5 4 27 27 C 1.38515 * 119.92902 * 359.97438 * 26 15 5 28 28 O 1.35996 * 120.03346 * 179.97438 * 27 26 15 29 29 C 1.42897 * 117.00017 * 0.02562 * 28 27 26 30 30 H 1.09005 * 109.46931 * 299.99171 * 1 2 3 31 31 H 1.08999 * 109.47537 * 59.99306 * 1 2 3 32 32 H 1.09004 * 109.47087 * 179.97438 * 1 2 3 33 33 H 1.08007 * 119.96348 * 0.03631 * 4 3 2 34 34 H 1.09001 * 109.46953 * 24.72632 * 6 5 4 35 35 H 1.09000 * 109.47318 * 144.72230 * 6 5 4 36 36 H 0.96997 * 119.99752 * 180.02562 * 10 9 7 37 37 H 0.97000 * 120.00264 * 359.97438 * 16 15 5 38 38 H 1.08996 * 109.47229 * 300.00473 * 17 16 15 39 39 H 1.09000 * 109.47020 * 60.00146 * 17 16 15 40 40 H 1.08997 * 110.70517 * 336.69691 * 20 18 17 41 41 H 1.09005 * 110.70287 * 99.92891 * 20 18 17 42 42 H 1.09000 * 110.37302 * 204.18783 * 24 21 20 43 43 H 1.09000 * 110.46517 * 81.89750 * 24 21 20 44 44 H 1.00903 * 110.99585 * 240.68042 * 25 18 17 45 45 H 1.08006 * 120.03216 * 179.97438 * 26 15 5 46 46 H 1.09002 * 109.46559 * 299.99433 * 29 28 27 47 47 H 1.08998 * 109.47358 * 59.99351 * 29 28 27 48 48 H 1.08995 * 109.46784 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2126 0.0000 4 6 1.2924 2.3744 0.0054 5 6 1.9182 3.6066 -0.0006 6 6 1.0951 4.8690 -0.0010 7 6 0.9243 5.3570 -1.4166 8 1 1.3678 4.8081 -2.2342 9 6 0.2027 6.5047 -1.6678 10 7 -0.3370 7.1733 -0.6721 11 14 -0.0083 7.1099 -3.4224 12 1 -0.6988 6.0690 -4.2254 13 1 -0.8196 8.3538 -3.4228 14 1 1.3251 7.3879 -4.0138 15 6 3.3047 3.6828 -0.0007 16 7 3.9369 4.9311 -0.0016 17 6 5.3997 5.0114 -0.0022 18 6 5.8299 6.4796 -0.0025 19 1 5.5070 6.9603 -0.9260 20 6 7.3641 6.5772 0.1317 21 6 7.5535 7.8080 1.0613 22 1 7.5033 8.7364 0.4925 23 9 8.7569 7.7216 1.7694 24 6 6.3387 7.6740 2.0131 25 7 5.2415 7.1749 1.1570 26 6 4.0637 2.5204 -0.0004 27 6 3.4363 1.2854 0.0004 28 8 4.1777 0.1453 0.0001 29 6 5.5987 0.2956 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 0.2138 2.3172 0.0103 34 1 0.1164 4.6648 0.4334 35 1 1.6017 5.6334 0.5882 36 1 -0.8449 7.9805 -0.8489 37 1 3.4066 5.7433 -0.0025 38 1 5.7910 4.5186 0.8878 39 1 5.7903 4.5178 -0.8921 40 1 7.7683 5.6779 0.5964 41 1 7.8257 6.7507 -0.8405 42 1 6.0788 8.6446 2.4356 43 1 6.5543 6.9603 2.8081 44 1 4.6425 7.9305 0.8597 45 1 5.1421 2.5789 -0.0009 46 1 5.9056 0.8446 -0.8907 47 1 5.9064 0.8449 0.8893 48 1 6.0680 -0.6882 -0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162477364.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:09 Heat of formation + Delta-G solvation = -95.421827 kcal Electronic energy + Delta-G solvation = -30023.401074 eV Core-core repulsion = 25800.152188 eV Total energy + Delta-G solvation = -4223.248886 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -47.85500 -39.97346 -38.80046 -37.84373 -37.18500 -34.08277 -33.12173 -30.82058 -30.36796 -29.70319 -28.16405 -27.54908 -26.81116 -25.94779 -24.38954 -23.00355 -21.72977 -21.18100 -20.36820 -19.99748 -17.90143 -17.56836 -16.83432 -16.42842 -16.28232 -16.21045 -15.53201 -15.32442 -15.09521 -14.94225 -14.77093 -14.57916 -14.38125 -14.05646 -13.92158 -13.60421 -13.16716 -13.10104 -12.51595 -12.47902 -12.40049 -12.06832 -12.02159 -11.89317 -11.56889 -11.46720 -11.23412 -11.07153 -10.99352 -10.94096 -10.84322 -10.72039 -10.57073 -10.48942 -10.38935 -9.50082 -9.38410 -8.69165 -8.60845 -8.43618 -7.69990 -6.27994 -5.98770 -4.08492 2.10261 2.39234 3.27322 3.32708 3.36367 3.66763 3.75285 3.93117 4.05176 4.10086 4.32943 4.37831 4.50122 4.55789 4.61047 4.93944 5.18159 5.25909 5.28381 5.29959 5.30914 5.38156 5.43755 5.44252 5.55239 5.58457 5.62391 5.65679 5.74456 5.83928 5.87221 5.91450 6.00873 6.05130 6.08356 6.27645 6.59915 6.64526 6.95765 7.13085 7.18112 7.29112 7.53241 7.60079 7.81689 7.91166 8.01985 8.28765 8.36425 8.57123 8.97449 9.55190 11.03691 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.006799 B = 0.004612 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4117.232391 B = 6069.244186 C = 9402.740327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.319 6.319 3 C 0.033 3.967 4 C -0.128 4.128 5 C -0.103 4.103 6 C 0.061 3.939 7 C -0.506 4.506 8 H 0.055 0.945 9 C 0.060 3.940 10 N -0.893 5.893 11 Si 0.890 3.110 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.279 1.279 15 C 0.224 3.776 16 N -0.727 5.727 17 C 0.147 3.853 18 C 0.068 3.932 19 H 0.077 0.923 20 C -0.156 4.156 21 C 0.055 3.945 22 H 0.092 0.908 23 F -0.206 7.206 24 C 0.030 3.970 25 N -0.668 5.668 26 C -0.257 4.257 27 C 0.114 3.886 28 O -0.313 6.313 29 C 0.032 3.968 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.088 0.912 33 H 0.129 0.871 34 H 0.025 0.975 35 H 0.027 0.973 36 H 0.261 0.739 37 H 0.414 0.586 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.351 0.649 45 H 0.122 0.878 46 H 0.048 0.952 47 H 0.048 0.952 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.534 -3.345 2.898 14.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.233 6.233 3 C -0.013 4.013 4 C -0.148 4.148 5 C -0.107 4.107 6 C 0.025 3.975 7 C -0.545 4.545 8 H 0.073 0.927 9 C -0.142 4.142 10 N -0.533 5.533 11 Si 0.718 3.282 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.204 1.204 15 C 0.121 3.879 16 N -0.360 5.360 17 C 0.020 3.980 18 C -0.042 4.042 19 H 0.095 0.905 20 C -0.196 4.196 21 C 0.017 3.983 22 H 0.110 0.890 23 F -0.187 7.187 24 C -0.100 4.100 25 N -0.297 5.297 26 C -0.281 4.281 27 C 0.069 3.931 28 O -0.227 6.227 29 C -0.064 4.064 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.147 0.853 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.253 0.747 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.107 0.893 44 H 0.169 0.831 45 H 0.140 0.860 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.521 -4.154 3.335 14.533 hybrid contribution 0.053 1.816 -1.552 2.389 sum 13.574 -2.338 1.784 13.889 Atomic orbital electron populations 1.22890 0.79815 1.02564 1.01184 1.86053 1.19957 1.26650 1.90677 1.17916 0.88699 0.84770 1.09924 1.20747 0.99361 0.90467 1.04220 1.19900 0.91743 0.96739 1.02323 1.18090 0.93940 0.88325 0.97190 1.21072 1.32700 1.08493 0.92197 0.92689 1.24980 0.95695 0.96740 0.96747 1.69951 1.35056 1.17590 1.30659 0.86693 0.78089 0.78091 0.85327 1.20247 1.21377 1.20431 1.17266 0.90928 0.85007 0.94748 1.44467 1.03969 1.05729 1.81832 1.21168 0.82881 0.94030 0.99878 1.22328 0.91978 0.96170 0.93765 0.90469 1.23368 0.96593 0.98815 1.00778 1.23371 0.81645 0.99848 0.93444 0.89004 1.92800 1.47875 1.97632 1.80381 1.23431 0.88844 1.01214 0.96516 1.61437 1.18247 1.31500 1.18553 1.20263 0.98888 0.90321 1.18589 1.17718 0.87736 0.84927 1.02757 1.86106 1.17767 1.29047 1.89758 1.22887 0.79981 1.02685 1.00802 0.93237 0.93040 0.89356 0.85342 0.95634 0.95533 0.92922 0.74668 0.92891 0.93022 0.89253 0.89573 0.90243 0.89298 0.83142 0.85975 0.93304 0.93308 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.81 101.05 0.99 1.44 16 2 O -0.32 -5.94 10.28 -34.65 -0.36 -6.29 16 3 C 0.03 0.65 6.70 -39.14 -0.26 0.39 16 4 C -0.13 -2.65 8.66 -39.49 -0.34 -2.99 16 5 C -0.10 -2.25 5.09 -104.40 -0.53 -2.78 16 6 C 0.06 1.52 4.53 -29.03 -0.13 1.39 16 7 C -0.51 -13.47 9.09 -34.44 -0.31 -13.79 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 10 N -0.89 -25.12 13.29 55.43 0.74 -24.39 16 11 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 C 0.22 4.42 6.63 -83.71 -0.56 3.87 16 16 N -0.73 -12.78 5.49 -58.60 -0.32 -13.10 16 17 C 0.15 1.97 4.51 -4.04 -0.02 1.95 16 18 C 0.07 0.75 3.48 -66.72 -0.23 0.52 16 19 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 20 C -0.16 -1.41 6.31 -24.77 -0.16 -1.57 16 21 C 0.05 0.50 4.85 -24.45 -0.12 0.38 16 22 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 23 F -0.21 -2.27 17.24 2.25 0.04 -2.24 16 24 C 0.03 0.29 7.39 -2.30 -0.02 0.28 16 25 N -0.67 -7.78 6.57 -103.81 -0.68 -8.47 16 26 C -0.26 -4.61 8.30 -39.26 -0.33 -4.93 16 27 C 0.11 2.17 6.70 -39.15 -0.26 1.91 16 28 O -0.31 -5.45 10.28 -34.34 -0.35 -5.80 16 29 C 0.03 0.39 9.81 101.05 0.99 1.38 16 30 H 0.05 0.67 7.65 -51.93 -0.40 0.28 16 31 H 0.05 0.73 7.67 -51.93 -0.40 0.33 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.13 2.51 6.29 -52.48 -0.33 2.18 16 34 H 0.03 0.67 8.05 -51.93 -0.42 0.26 16 35 H 0.03 0.68 6.81 -51.93 -0.35 0.33 16 36 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.41 7.99 6.31 -40.82 -0.26 7.74 16 38 H 0.05 0.71 7.87 -51.93 -0.41 0.30 16 39 H 0.05 0.66 7.95 -51.93 -0.41 0.25 16 40 H 0.09 0.82 7.80 -51.93 -0.40 0.42 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.35 3.98 8.91 -39.29 -0.35 3.63 16 45 H 0.12 1.86 4.97 -52.48 -0.26 1.60 16 46 H 0.05 0.55 7.66 -51.93 -0.40 0.16 16 47 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 48 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 389.96 15.07 5.88 5.88 Total: -1.00 -31.18 389.96 -8.75 -39.93 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -7.29 Total: 9.72 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -1.38 Total: -11.05 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -0.27 Total: -45.95 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.71 Total: -12.10 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.18 -8.75 -39.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162477364.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.497 kcal (2) G-P(sol) polarization free energy of solvation -31.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds