Wall clock time and date at job start Tue Mar 31 2020 22:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38064 * 119.57303 * 2 1 4 4 C 1.38836 * 119.32777 * 180.02562 * 3 2 1 5 5 C 1.38336 * 118.50642 * 359.97438 * 4 3 2 6 6 C 1.39090 * 119.10041 * 0.02562 * 5 4 3 7 7 N 1.39008 * 119.70714 * 179.97438 * 6 5 4 8 8 C 1.46958 * 111.00011 * 179.97438 * 7 6 5 9 9 C 1.53056 * 109.36531 * 183.18808 * 8 7 6 10 10 N 1.46954 * 109.36179 * 301.59966 * 9 8 7 11 11 C 1.38371 * 111.00153 * 183.19137 * 10 9 8 12 12 C 1.39706 * 119.43207 * 180.02562 * 11 10 9 13 13 C 1.36562 * 119.49215 * 179.97438 * 12 11 10 14 14 C 1.41330 * 118.40782 * 0.02562 * 13 12 11 15 15 C 1.41198 * 120.57047 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99974 * 204.90080 * 15 14 13 17 17 C 1.39872 * 120.00089 * 24.89122 * 15 14 13 18 18 N 1.30903 * 119.99795 * 14.70453 * 17 15 14 19 19 Si 1.86798 * 120.00062 * 194.69769 * 17 15 14 20 20 H 1.48503 * 109.47324 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47164 * 120.00437 * 19 17 15 22 22 H 1.48495 * 109.47213 * 240.00427 * 19 17 15 23 23 C 1.40751 * 118.85797 * 359.97438 * 14 13 12 24 24 C 1.50703 * 119.81225 * 179.97438 * 23 14 13 25 25 N 1.31482 * 120.37120 * 359.97438 * 23 14 13 26 26 C 1.46951 * 110.88324 * 59.31741 * 10 9 8 27 27 C 1.46957 * 111.00101 * 303.79599 * 7 6 5 28 28 N 1.31946 * 119.57120 * 180.27186 * 2 1 3 29 29 H 1.09004 * 109.47143 * 90.00500 * 1 2 3 30 30 H 1.09001 * 109.47282 * 210.00257 * 1 2 3 31 31 H 1.08998 * 109.47305 * 330.00498 * 1 2 3 32 32 H 1.08002 * 120.33585 * 0.03566 * 3 2 1 33 33 H 1.08005 * 120.74612 * 179.97438 * 4 3 2 34 34 H 1.08009 * 120.45409 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.48978 * 63.22137 * 8 7 6 36 36 H 1.09001 * 109.50857 * 303.16789 * 8 7 6 37 37 H 1.09001 * 109.48482 * 181.63518 * 9 8 7 38 38 H 1.08997 * 109.50301 * 61.57660 * 9 8 7 39 39 H 1.08001 * 120.25550 * 359.97423 * 12 11 10 40 40 H 1.07998 * 120.79882 * 180.02562 * 13 12 11 41 41 H 0.96998 * 119.99695 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.47601 * 269.97660 * 24 23 14 43 43 H 1.08994 * 109.47316 * 29.98770 * 24 23 14 44 44 H 1.09012 * 109.46877 * 149.98227 * 24 23 14 45 45 H 1.09001 * 109.48691 * 60.64549 * 26 10 9 46 46 H 1.09007 * 109.49108 * 180.70903 * 26 10 9 47 47 H 1.09008 * 109.48735 * 296.78277 * 27 7 6 48 48 H 1.08997 * 109.48631 * 56.81852 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2008 0.0000 4 6 3.5768 1.1948 -0.0005 5 6 4.2318 -0.0236 -0.0005 6 6 3.4816 -1.1949 -0.0005 7 7 4.1268 -2.4262 -0.0010 8 6 3.1560 -3.5294 -0.0003 9 6 3.9032 -4.8629 0.0794 10 7 4.8227 -4.9750 -1.0614 11 6 5.4649 -6.2007 -1.0620 12 6 6.3827 -6.4943 -2.0736 13 6 7.0176 -7.7033 -2.0751 14 6 6.7185 -8.6212 -1.0429 15 6 7.3479 -9.8844 -1.0005 16 1 6.8667 -10.7109 -0.4987 17 6 8.5944 -10.0655 -1.6086 18 7 9.3081 -9.0261 -1.9606 19 14 9.2409 -11.7905 -1.9181 20 1 8.2509 -12.7848 -1.4319 21 1 9.4608 -11.9828 -3.3741 22 1 10.5247 -11.9752 -1.1950 23 6 5.7824 -8.2543 -0.0579 24 6 5.4469 -9.2167 1.0523 25 7 5.1991 -7.0768 -0.1009 26 6 5.7934 -3.8718 -1.0622 27 6 5.0468 -2.5382 -1.1415 28 7 2.1582 -1.1476 -0.0054 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.6469 2.1352 0.0006 33 1 4.1329 2.1207 -0.0010 34 1 5.3111 -0.0650 -0.0005 35 1 2.5675 -3.4966 -0.9172 36 1 2.4942 -3.4314 0.8602 37 1 3.1864 -5.6835 0.0508 38 1 4.4701 -4.9073 1.0093 39 1 6.5885 -5.7706 -2.8484 40 1 7.7312 -7.9522 -2.8466 41 1 10.1727 -9.1516 -2.3819 42 1 4.6091 -9.8442 0.7485 43 1 6.3129 -9.8439 1.2635 44 1 5.1760 -8.6577 1.9482 45 1 6.3819 -3.9046 -0.1453 46 1 6.4550 -3.9700 -1.9230 47 1 4.4800 -2.4939 -2.0716 48 1 5.7632 -1.7172 -1.1128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163668787.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:42 Heat of formation + Delta-G solvation = 88.059736 kcal Electronic energy + Delta-G solvation = -28558.255345 eV Core-core repulsion = 24806.024792 eV Total energy + Delta-G solvation = -3752.230553 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.180 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.83426 -39.39376 -37.95932 -35.51834 -33.76970 -33.06680 -31.84895 -31.39049 -30.56545 -30.10787 -27.81273 -26.93538 -26.47349 -24.16182 -23.72020 -22.55317 -21.76495 -21.11195 -20.08653 -19.56715 -17.54722 -17.30464 -16.50530 -16.17352 -15.86121 -15.45475 -15.06352 -14.83159 -14.44791 -14.30796 -14.11457 -13.94147 -13.65828 -13.43203 -13.13982 -12.86639 -12.70923 -12.46367 -12.45116 -12.08363 -12.05946 -11.93764 -11.57653 -11.53838 -11.28639 -11.18692 -10.98431 -10.88721 -10.78603 -10.66649 -10.56145 -10.09145 -9.79682 -9.67575 -9.50451 -9.41595 -8.61198 -8.22483 -8.08685 -8.02664 -7.07180 -6.80280 -4.39548 1.02019 1.19115 2.55853 2.92619 3.01984 3.06761 3.11541 3.39852 3.74667 3.84596 4.23437 4.31853 4.59016 4.65082 4.90861 4.96948 5.00602 5.14513 5.22491 5.34632 5.36413 5.41186 5.43885 5.50110 5.56151 5.71592 5.78556 5.82566 5.84462 5.90627 5.99688 6.08945 6.17523 6.27718 6.31414 6.40832 6.46193 6.54239 6.62999 6.67927 6.75624 6.80610 6.95133 7.05859 7.16911 7.31858 7.35266 7.44879 7.79838 7.96692 7.99925 8.17326 8.46928 8.68963 8.76955 9.59844 10.06991 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.030007 B = 0.002210 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.882605 B =12665.895843 C =13256.731151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.153 3.847 3 C -0.210 4.210 4 C -0.051 4.051 5 C -0.197 4.197 6 C 0.325 3.675 7 N -0.478 5.478 8 C 0.070 3.930 9 C 0.073 3.927 10 N -0.468 5.468 11 C 0.168 3.832 12 C -0.152 4.152 13 C -0.116 4.116 14 C 0.056 3.944 15 C -0.443 4.443 16 H 0.084 0.916 17 C 0.072 3.928 18 N -0.795 5.795 19 Si 0.911 3.089 20 H -0.259 1.259 21 H -0.272 1.272 22 H -0.274 1.274 23 C 0.018 3.982 24 C -0.070 4.070 25 N -0.490 5.490 26 C 0.060 3.940 27 C 0.066 3.934 28 N -0.520 5.520 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.047 0.953 39 H 0.099 0.901 40 H 0.130 0.870 41 H 0.281 0.719 42 H 0.047 0.953 43 H 0.067 0.933 44 H 0.047 0.953 45 H 0.045 0.955 46 H 0.087 0.913 47 H 0.054 0.946 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.526 16.144 1.282 18.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.015 3.985 3 C -0.231 4.231 4 C -0.077 4.077 5 C -0.219 4.219 6 C 0.093 3.907 7 N -0.196 5.196 8 C -0.057 4.057 9 C -0.055 4.055 10 N -0.188 5.188 11 C -0.063 4.063 12 C -0.175 4.175 13 C -0.142 4.142 14 C 0.052 3.948 15 C -0.473 4.473 16 H 0.102 0.898 17 C -0.146 4.146 18 N -0.421 5.421 19 Si 0.736 3.264 20 H -0.183 1.183 21 H -0.197 1.197 22 H -0.199 1.199 23 C -0.123 4.123 24 C -0.128 4.128 25 N -0.203 5.203 26 C -0.068 4.068 27 C -0.059 4.059 28 N -0.235 5.235 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.153 0.847 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.066 0.934 39 H 0.117 0.883 40 H 0.148 0.852 41 H 0.092 0.908 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.106 0.894 47 H 0.072 0.928 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.314 15.588 1.799 18.248 hybrid contribution 1.663 -0.066 -0.779 1.837 sum -7.651 15.522 1.021 17.336 Atomic orbital electron populations 1.20721 0.88998 1.03370 1.03031 1.21073 0.96651 0.87886 0.92933 1.21745 0.94897 0.98947 1.07545 1.21392 0.94310 0.97778 0.94256 1.21551 1.01189 0.91794 1.07402 1.19910 0.88121 0.90633 0.92035 1.59310 1.18924 1.00555 1.40766 1.22184 0.92787 0.88202 1.02491 1.21912 0.95923 0.95288 0.92350 1.59557 1.17043 1.00666 1.41535 1.18793 1.00350 0.91280 0.95841 1.20826 0.99210 0.98547 0.98884 1.21366 1.00415 0.93398 0.99010 1.18296 0.91983 0.93994 0.90561 1.19537 1.01696 0.96257 1.29831 0.89781 1.25969 0.96581 0.98924 0.93126 1.69816 1.10733 1.31504 1.30032 0.86200 0.79174 0.82140 0.78924 1.18264 1.19697 1.19932 1.20838 1.01267 0.92350 0.97884 1.20241 1.00559 0.96715 0.95244 1.66695 1.26230 1.04106 1.23268 1.22274 0.93759 0.88697 1.02057 1.22354 0.94790 0.98614 0.90191 1.67485 1.08685 1.29921 1.17416 0.90451 0.90458 0.90786 0.85217 0.84896 0.84724 0.92658 0.89661 0.89399 0.93431 0.88284 0.85212 0.90780 0.93433 0.91439 0.93420 0.93630 0.89446 0.92801 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.83 10.17 36.01 0.37 -0.46 16 2 C 0.15 1.70 6.78 -82.60 -0.56 1.15 16 3 C -0.21 -1.97 9.73 -39.42 -0.38 -2.35 16 4 C -0.05 -0.48 10.17 -39.32 -0.40 -0.88 16 5 C -0.20 -2.23 9.21 -39.23 -0.36 -2.59 16 6 C 0.33 4.49 6.40 -155.01 -0.99 3.49 16 7 N -0.48 -7.08 4.73 -173.04 -0.82 -7.89 16 8 C 0.07 1.10 4.79 -3.76 -0.02 1.08 16 9 C 0.07 1.33 4.77 -3.77 -0.02 1.32 16 10 N -0.47 -9.07 4.72 -172.97 -0.82 -9.89 16 11 C 0.17 3.84 6.41 -155.12 -0.99 2.84 16 12 C -0.15 -3.53 9.12 -39.64 -0.36 -3.89 16 13 C -0.12 -2.93 8.73 -39.01 -0.34 -3.27 16 14 C 0.06 1.46 5.59 -106.65 -0.60 0.86 16 15 C -0.44 -11.16 8.16 -37.85 -0.31 -11.46 16 16 H 0.08 2.02 6.84 -52.48 -0.36 1.66 16 17 C 0.07 1.71 5.22 -17.34 -0.09 1.62 16 18 N -0.80 -19.66 10.83 55.54 0.60 -19.06 16 19 Si 0.91 17.94 29.58 -169.99 -5.03 12.91 16 20 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 21 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 23 C 0.02 0.45 6.86 -81.79 -0.56 -0.11 16 24 C -0.07 -1.47 9.58 36.01 0.34 -1.12 16 25 N -0.49 -11.85 8.55 -8.05 -0.07 -11.91 16 26 C 0.06 0.99 5.36 -3.77 -0.02 0.97 16 27 C 0.07 0.92 5.37 -3.77 -0.02 0.90 16 28 N -0.52 -7.17 8.62 -8.67 -0.07 -7.25 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 33 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 34 H 0.13 1.33 7.17 -52.48 -0.38 0.96 16 35 H 0.06 0.90 8.05 -51.93 -0.42 0.49 16 36 H 0.09 1.31 7.83 -51.93 -0.41 0.90 16 37 H 0.09 1.68 7.81 -51.93 -0.41 1.28 16 38 H 0.05 0.94 8.04 -51.93 -0.42 0.52 16 39 H 0.10 2.06 7.14 -52.49 -0.37 1.68 16 40 H 0.13 3.34 6.17 -52.49 -0.32 3.01 16 41 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.07 1.39 6.75 -51.93 -0.35 1.04 16 44 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.09 1.39 6.75 -51.92 -0.35 1.04 16 47 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 48 H 0.08 0.96 6.79 -51.93 -0.35 0.61 16 LS Contribution 381.42 15.07 5.75 5.75 Total: -1.00 -28.74 381.42 -12.84 -41.58 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -7.07 Total: 7.69 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -5.31 Total: -11.91 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -1.18 Total: -56.01 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.74 -12.84 -41.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163668787.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.637 kcal (2) G-P(sol) polarization free energy of solvation -28.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds