Wall clock time and date at job start Tue Mar 31 2020 21:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86799 * 120.00583 * 2 1 4 4 H 1.48503 * 109.46900 * 270.00550 * 3 2 1 5 5 H 1.48504 * 109.46977 * 29.99907 * 3 2 1 6 6 H 1.48499 * 109.47492 * 150.00182 * 3 2 1 7 7 C 1.40034 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99927 * 197.25308 * 7 2 1 9 9 C 1.41550 * 120.00019 * 17.24992 * 7 2 1 10 10 C 1.41187 * 120.99575 * 203.17422 * 9 7 2 11 11 C 1.36550 * 119.14814 * 179.97438 * 10 9 7 12 12 N 1.32089 * 121.27111 * 0.02562 * 11 10 9 13 13 C 1.32528 * 122.21654 * 359.97438 * 12 11 10 14 14 N 1.39085 * 119.66060 * 180.02562 * 13 12 11 15 15 C 1.40080 * 111.00066 * 236.04619 * 14 13 12 16 16 C 1.54511 * 111.51133 * 188.14741 * 15 14 13 17 17 C 1.50745 * 108.94266 * 283.99086 * 16 15 14 18 18 N 1.48066 * 112.94083 * 92.64789 * 17 16 15 19 19 C 1.46899 * 110.99925 * 192.21706 * 18 17 16 20 20 C 1.50701 * 109.47043 * 189.99583 * 19 18 17 21 21 C 1.38648 * 120.79208 * 269.72420 * 20 19 18 22 22 C 1.38209 * 119.16145 * 179.79488 * 21 20 19 23 23 N 1.31869 * 120.76131 * 0.49015 * 22 21 20 24 24 C 1.31874 * 121.73088 * 359.73614 * 23 22 21 25 25 C 1.38202 * 120.75764 * 0.02753 * 24 23 22 26 26 C 1.47746 * 113.78812 * 318.28568 * 18 17 16 27 27 C 1.47688 * 110.99815 * 4.68442 * 14 13 12 28 28 C 1.38747 * 120.68455 * 359.97438 * 13 12 11 29 29 H 0.97000 * 119.99600 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.42245 * 0.02562 * 10 9 7 31 31 H 1.08003 * 119.36318 * 180.02562 * 11 10 9 32 32 H 1.09005 * 109.06805 * 308.66890 * 15 14 13 33 33 H 1.08999 * 109.07480 * 67.62271 * 15 14 13 34 34 H 1.08999 * 109.55988 * 43.82469 * 16 15 14 35 35 H 1.08997 * 109.56339 * 164.04060 * 16 15 14 36 36 H 1.09005 * 108.78806 * 213.54082 * 17 16 15 37 37 H 1.09001 * 108.78784 * 331.86767 * 17 16 15 38 38 H 1.08994 * 109.47656 * 310.00218 * 19 18 17 39 39 H 1.09001 * 109.47233 * 70.00309 * 19 18 17 40 40 H 1.07997 * 120.41854 * 0.02562 * 21 20 19 41 41 H 1.07995 * 119.61934 * 180.19998 * 22 21 20 42 42 H 1.07995 * 119.61942 * 180.02562 * 24 23 22 43 43 H 1.08005 * 120.41349 * 180.02562 * 25 24 23 44 44 H 1.08998 * 108.99515 * 79.50017 * 26 18 17 45 45 H 1.08999 * 108.99285 * 198.32867 * 26 18 17 46 46 H 1.09004 * 109.73570 * 271.64451 * 27 14 13 47 47 H 1.09003 * 109.73691 * 32.33965 * 27 14 13 48 48 H 1.08005 * 120.66568 * 179.97438 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4391 2.6527 0.7000 6 1 3.5392 1.4400 0.7000 7 6 2.0075 -1.2128 -0.0005 8 1 3.0510 -1.2340 0.2768 9 6 1.3475 -2.4109 -0.3646 10 6 1.8279 -3.6660 0.0679 11 6 1.1614 -4.7979 -0.3052 12 7 0.0797 -4.7389 -1.0610 13 6 -0.4164 -3.5896 -1.4961 14 7 -1.5591 -3.5894 -2.2890 15 6 -1.3274 -2.9307 -3.5034 16 6 -2.6347 -2.7450 -4.3056 17 6 -3.0170 -4.0626 -4.9303 18 7 -3.9395 -4.8555 -4.0861 19 6 -4.0561 -6.2327 -4.5837 20 6 -5.1763 -6.9349 -3.8605 21 6 -4.9351 -7.6367 -2.6893 22 6 -5.9881 -8.2646 -2.0514 23 7 -7.2079 -8.2097 -2.5496 24 6 -7.4733 -7.5556 -3.6635 25 6 -6.4717 -6.8995 -4.3536 26 6 -3.5955 -4.8389 -2.6494 27 6 -2.1089 -4.9534 -2.4254 28 6 0.1916 -2.3865 -1.1679 29 1 -0.4849 0.8401 0.0004 30 1 2.7109 -3.7300 0.6867 31 1 1.5257 -5.7598 0.0241 32 1 -0.8920 -1.9523 -3.3003 33 1 -0.6250 -3.5155 -4.0974 34 1 -3.4294 -2.4141 -3.6369 35 1 -2.4811 -2.0001 -5.0864 36 1 -3.4970 -3.8701 -5.8899 37 1 -2.1120 -4.6455 -5.1018 38 1 -4.2679 -6.2161 -5.6528 39 1 -3.1206 -6.7634 -4.4069 40 1 -3.9376 -7.6888 -2.2787 41 1 -5.8092 -8.8105 -1.1370 42 1 -8.4849 -7.5324 -4.0408 43 1 -6.6954 -6.3651 -5.2652 44 1 -3.9495 -3.9061 -2.2105 45 1 -4.0928 -5.6739 -2.1559 46 1 -1.6458 -5.4535 -3.2760 47 1 -1.9164 -5.5206 -1.5146 48 1 -0.2127 -1.4500 -1.5230 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163827610.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:45 Heat of formation + Delta-G solvation = 93.691766 kcal Electronic energy + Delta-G solvation = -29085.916645 eV Core-core repulsion = 25333.930315 eV Total energy + Delta-G solvation = -3751.986329 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.180 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.54297 -39.79351 -38.06912 -35.89987 -34.15012 -33.22507 -31.97757 -31.30202 -30.54586 -29.70039 -27.76970 -26.15247 -25.68928 -24.90926 -23.56028 -22.32037 -21.72578 -21.30834 -20.04732 -19.48882 -17.78128 -16.72354 -16.59231 -16.35634 -15.87231 -15.60219 -15.56501 -15.18689 -14.84168 -14.33532 -14.21763 -13.94333 -13.82507 -13.69274 -13.33567 -13.10627 -12.84829 -12.64634 -12.37599 -12.24887 -12.06099 -11.67849 -11.59213 -11.46874 -11.29181 -11.23825 -11.00160 -10.86807 -10.67696 -10.41353 -10.28379 -9.99765 -9.70095 -9.59072 -9.46811 -9.23213 -8.83067 -8.22723 -8.04502 -8.00857 -6.94126 -6.82828 -4.63390 1.01899 1.10075 2.70012 2.80665 2.99941 3.03004 3.20412 3.58558 3.82275 4.01165 4.33345 4.34298 4.48002 4.58083 4.62683 4.95600 4.97362 5.01168 5.06850 5.17765 5.29415 5.43440 5.52991 5.54698 5.57803 5.59342 5.62836 5.66953 5.74966 5.84004 5.87907 5.93396 6.03001 6.20387 6.24354 6.29081 6.41234 6.47957 6.57618 6.62079 6.79190 6.88820 7.02309 7.05920 7.12881 7.17981 7.44019 7.57472 7.84879 7.87734 7.88182 8.20549 8.54680 8.72162 8.74760 9.54152 10.03638 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018818 B = 0.002619 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.569399 B =10687.483984 C =11307.151957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.077 3.923 3 Si 0.910 3.090 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.454 4.454 8 H 0.081 0.919 9 C 0.138 3.862 10 C -0.285 4.285 11 C 0.117 3.883 12 N -0.608 5.608 13 C 0.294 3.706 14 N -0.483 5.483 15 C 0.075 3.925 16 C -0.121 4.121 17 C 0.063 3.937 18 N -0.540 5.540 19 C 0.091 3.909 20 C -0.028 4.028 21 C -0.165 4.165 22 C 0.097 3.903 23 N -0.490 5.490 24 C 0.094 3.906 25 C -0.154 4.154 26 C 0.047 3.953 27 C 0.049 3.951 28 C -0.225 4.225 29 H 0.283 0.717 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.084 0.916 33 H 0.018 0.982 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.032 0.968 38 H 0.083 0.917 39 H 0.047 0.953 40 H 0.135 0.865 41 H 0.155 0.845 42 H 0.153 0.847 43 H 0.134 0.866 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.034 0.966 47 H 0.098 0.902 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.289 -7.939 -9.792 15.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.485 4.485 8 H 0.099 0.901 9 C 0.129 3.871 10 C -0.309 4.309 11 C -0.036 4.036 12 N -0.328 5.328 13 C 0.069 3.931 14 N -0.201 5.201 15 C -0.054 4.054 16 C -0.159 4.159 17 C -0.064 4.064 18 N -0.265 5.265 19 C -0.036 4.036 20 C -0.037 4.037 21 C -0.186 4.186 22 C -0.059 4.059 23 N -0.199 5.199 24 C -0.063 4.063 25 C -0.174 4.174 26 C -0.081 4.081 27 C -0.079 4.079 28 C -0.250 4.250 29 H 0.095 0.905 30 H 0.117 0.883 31 H 0.136 0.864 32 H 0.102 0.898 33 H 0.037 0.963 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.050 0.950 38 H 0.102 0.898 39 H 0.065 0.935 40 H 0.153 0.847 41 H 0.172 0.828 42 H 0.170 0.830 43 H 0.152 0.848 44 H 0.106 0.894 45 H 0.093 0.907 46 H 0.053 0.947 47 H 0.116 0.884 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.407 -8.503 -9.459 17.085 hybrid contribution 2.868 1.261 -0.329 3.150 sum -8.540 -7.241 -9.788 14.872 Atomic orbital electron populations 1.69801 1.07616 1.29565 1.33110 1.25985 0.94770 1.01503 0.92053 0.86276 0.80530 0.80320 0.79452 1.19141 1.20117 1.18495 1.19612 0.98015 0.90866 1.39998 0.90062 1.17697 0.90265 0.92189 0.86905 1.21554 1.05336 0.93994 1.09999 1.21307 0.91218 0.96693 0.94404 1.67101 1.16426 1.28125 1.21194 1.19300 0.88671 0.90234 0.94868 1.56365 1.28068 1.19122 1.16506 1.21172 0.95758 0.99623 0.88814 1.21584 0.98297 0.96212 0.99785 1.21853 0.94146 0.94353 0.96049 1.62187 1.51055 1.10108 1.03166 1.21009 0.94885 0.89121 0.98630 1.20185 0.95028 0.94157 0.94284 1.22157 1.01258 0.98973 0.96174 1.22736 0.87840 0.96387 0.98988 1.67657 1.22680 1.17401 1.12159 1.22736 0.99476 0.93132 0.90975 1.22003 0.93024 1.00541 1.01818 1.22264 0.94856 1.03713 0.87229 1.22159 0.94131 0.89200 1.02450 1.21647 1.01197 0.96221 1.05906 0.90543 0.88284 0.86437 0.89774 0.96346 0.89636 0.90487 0.91123 0.94984 0.89840 0.93519 0.84703 0.82803 0.82962 0.84840 0.89375 0.90650 0.94736 0.88365 0.85220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.39 10.90 55.55 0.61 -18.78 16 2 C 0.08 1.87 5.20 -17.34 -0.09 1.78 16 3 Si 0.91 17.91 29.59 -169.99 -5.03 12.87 16 4 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.28 -5.33 7.11 56.52 0.40 -4.92 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.45 -11.65 9.12 -37.65 -0.34 -11.99 16 8 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 9 C 0.14 3.60 5.61 -106.56 -0.60 3.01 16 10 C -0.28 -6.87 9.85 -39.07 -0.38 -7.25 16 11 C 0.12 2.66 11.10 -18.05 -0.20 2.46 16 12 N -0.61 -14.18 8.27 -12.82 -0.11 -14.28 16 13 C 0.29 6.89 6.36 -154.98 -0.99 5.90 16 14 N -0.48 -9.49 4.01 -178.06 -0.71 -10.21 16 15 C 0.07 1.30 4.80 -6.56 -0.03 1.27 16 16 C -0.12 -1.64 5.68 -27.07 -0.15 -1.79 16 17 C 0.06 0.77 4.97 -4.31 -0.02 0.75 16 18 N -0.54 -6.73 4.76 -237.13 -1.13 -7.86 16 19 C 0.09 0.97 5.06 -4.98 -0.03 0.94 16 20 C -0.03 -0.30 4.89 -104.32 -0.51 -0.81 16 21 C -0.17 -1.77 7.88 -39.44 -0.31 -2.08 16 22 C 0.10 1.05 11.18 -17.55 -0.20 0.85 16 23 N -0.49 -5.82 10.36 -13.25 -0.14 -5.96 16 24 C 0.09 0.94 11.18 -17.55 -0.20 0.75 16 25 C -0.15 -1.49 9.82 -39.44 -0.39 -1.88 16 26 C 0.05 0.67 5.09 -4.47 -0.02 0.65 16 27 C 0.05 0.83 4.81 -4.51 -0.02 0.81 16 28 C -0.22 -5.72 7.81 -38.43 -0.30 -6.02 16 29 H 0.28 6.43 8.29 -40.82 -0.34 6.09 16 30 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 31 H 0.12 2.28 8.06 -52.48 -0.42 1.86 16 32 H 0.08 1.60 6.40 -51.93 -0.33 1.27 16 33 H 0.02 0.33 7.60 -51.93 -0.39 -0.06 16 34 H 0.09 1.26 7.19 -51.93 -0.37 0.89 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.03 0.42 6.40 -51.93 -0.33 0.09 16 38 H 0.08 0.76 8.04 -51.93 -0.42 0.34 16 39 H 0.05 0.52 7.62 -51.93 -0.40 0.12 16 40 H 0.14 1.36 7.67 -52.49 -0.40 0.96 16 41 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 43 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 44 H 0.09 1.44 7.20 -51.93 -0.37 1.07 16 45 H 0.08 1.03 4.67 -51.93 -0.24 0.78 16 46 H 0.03 0.59 6.27 -51.93 -0.33 0.27 16 47 H 0.10 1.86 6.83 -51.93 -0.35 1.50 16 48 H 0.13 3.39 5.21 -52.48 -0.27 3.12 16 LS Contribution 373.46 15.07 5.63 5.63 Total: -1.00 -28.58 373.46 -12.39 -40.97 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -6.73 Total: 10.28 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -4.78 Total: -12.67 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: -1.48 Total: -57.08 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.87 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.58 -12.39 -40.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163827610.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.658 kcal (2) G-P(sol) polarization free energy of solvation -28.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds