Wall clock time and date at job start Tue Mar 31 2020 21:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86799 * 120.00583 * 2 1 4 4 H 1.48503 * 109.46900 * 270.00550 * 3 2 1 5 5 H 1.48504 * 109.46977 * 29.99907 * 3 2 1 6 6 H 1.48499 * 109.47492 * 150.00182 * 3 2 1 7 7 C 1.40034 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99927 * 197.25308 * 7 2 1 9 9 C 1.41550 * 120.00019 * 17.24992 * 7 2 1 10 10 C 1.41187 * 120.99575 * 203.17422 * 9 7 2 11 11 C 1.36550 * 119.14814 * 179.97438 * 10 9 7 12 12 N 1.32089 * 121.27111 * 0.02562 * 11 10 9 13 13 C 1.32528 * 122.21654 * 359.97438 * 12 11 10 14 14 N 1.39085 * 119.66060 * 180.02562 * 13 12 11 15 15 C 1.40080 * 111.00066 * 236.04619 * 14 13 12 16 16 C 1.54511 * 111.51133 * 188.14741 * 15 14 13 17 17 C 1.50745 * 108.94266 * 283.99086 * 16 15 14 18 18 N 1.48066 * 112.94083 * 92.64789 * 17 16 15 19 19 C 1.46899 * 110.99925 * 192.21706 * 18 17 16 20 20 C 1.50701 * 109.47043 * 189.99583 * 19 18 17 21 21 C 1.38648 * 120.79208 * 269.72420 * 20 19 18 22 22 C 1.38209 * 119.16145 * 179.79488 * 21 20 19 23 23 N 1.31869 * 120.76131 * 0.49015 * 22 21 20 24 24 C 1.31874 * 121.73088 * 359.73614 * 23 22 21 25 25 C 1.38202 * 120.75764 * 0.02753 * 24 23 22 26 26 C 1.47746 * 113.78812 * 318.28568 * 18 17 16 27 27 C 1.47688 * 110.99815 * 4.68442 * 14 13 12 28 28 C 1.38747 * 120.68455 * 359.97438 * 13 12 11 29 29 H 0.97000 * 119.99600 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.42245 * 0.02562 * 10 9 7 31 31 H 1.08003 * 119.36318 * 180.02562 * 11 10 9 32 32 H 1.09005 * 109.06805 * 308.66890 * 15 14 13 33 33 H 1.08999 * 109.07480 * 67.62271 * 15 14 13 34 34 H 1.08999 * 109.55988 * 43.82469 * 16 15 14 35 35 H 1.08997 * 109.56339 * 164.04060 * 16 15 14 36 36 H 1.09005 * 108.78806 * 213.54082 * 17 16 15 37 37 H 1.09001 * 108.78784 * 331.86767 * 17 16 15 38 38 H 1.08994 * 109.47656 * 310.00218 * 19 18 17 39 39 H 1.09001 * 109.47233 * 70.00309 * 19 18 17 40 40 H 1.07997 * 120.41854 * 0.02562 * 21 20 19 41 41 H 1.07995 * 119.61934 * 180.19998 * 22 21 20 42 42 H 1.07995 * 119.61942 * 180.02562 * 24 23 22 43 43 H 1.08005 * 120.41349 * 180.02562 * 25 24 23 44 44 H 1.08998 * 108.99515 * 79.50017 * 26 18 17 45 45 H 1.08999 * 108.99285 * 198.32867 * 26 18 17 46 46 H 1.09004 * 109.73570 * 271.64451 * 27 14 13 47 47 H 1.09003 * 109.73691 * 32.33965 * 27 14 13 48 48 H 1.08005 * 120.66568 * 179.97438 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4391 2.6527 0.7000 6 1 3.5392 1.4400 0.7000 7 6 2.0075 -1.2128 -0.0005 8 1 3.0510 -1.2340 0.2768 9 6 1.3475 -2.4109 -0.3646 10 6 1.8279 -3.6660 0.0679 11 6 1.1614 -4.7979 -0.3052 12 7 0.0797 -4.7389 -1.0610 13 6 -0.4164 -3.5896 -1.4961 14 7 -1.5591 -3.5894 -2.2890 15 6 -1.3274 -2.9307 -3.5034 16 6 -2.6347 -2.7450 -4.3056 17 6 -3.0170 -4.0626 -4.9303 18 7 -3.9395 -4.8555 -4.0861 19 6 -4.0561 -6.2327 -4.5837 20 6 -5.1763 -6.9349 -3.8605 21 6 -4.9351 -7.6367 -2.6893 22 6 -5.9881 -8.2646 -2.0514 23 7 -7.2079 -8.2097 -2.5496 24 6 -7.4733 -7.5556 -3.6635 25 6 -6.4717 -6.8995 -4.3536 26 6 -3.5955 -4.8389 -2.6494 27 6 -2.1089 -4.9534 -2.4254 28 6 0.1916 -2.3865 -1.1679 29 1 -0.4849 0.8401 0.0004 30 1 2.7109 -3.7300 0.6867 31 1 1.5257 -5.7598 0.0241 32 1 -0.8920 -1.9523 -3.3003 33 1 -0.6250 -3.5155 -4.0974 34 1 -3.4294 -2.4141 -3.6369 35 1 -2.4811 -2.0001 -5.0864 36 1 -3.4970 -3.8701 -5.8899 37 1 -2.1120 -4.6455 -5.1018 38 1 -4.2679 -6.2161 -5.6528 39 1 -3.1206 -6.7634 -4.4069 40 1 -3.9376 -7.6888 -2.2787 41 1 -5.8092 -8.8105 -1.1370 42 1 -8.4849 -7.5324 -4.0408 43 1 -6.6954 -6.3651 -5.2652 44 1 -3.9495 -3.9061 -2.2105 45 1 -4.0928 -5.6739 -2.1559 46 1 -1.6458 -5.4535 -3.2760 47 1 -1.9164 -5.5206 -1.5146 48 1 -0.2127 -1.4500 -1.5230 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163827610.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:44 Heat of formation + Delta-G solvation = 77.591235 kcal Electronic energy + Delta-G solvation = -29086.614816 eV Core-core repulsion = 25333.930315 eV Total energy + Delta-G solvation = -3752.684501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.180 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.66917 -40.99657 -39.55782 -37.23014 -35.95012 -34.31653 -33.15602 -32.38991 -32.06141 -31.17097 -29.13568 -27.94217 -26.94246 -26.11446 -24.34947 -23.54299 -23.45889 -22.57463 -21.57471 -20.67360 -19.53086 -17.93230 -17.61636 -17.43149 -17.21124 -16.86819 -16.62731 -16.47578 -16.27474 -15.99105 -15.71562 -15.32637 -14.99245 -14.60205 -14.52830 -14.41186 -14.34307 -14.03838 -13.75664 -13.40662 -13.31568 -13.14757 -12.97193 -12.89254 -12.64590 -12.41461 -12.36021 -12.21963 -11.97431 -11.95475 -11.75563 -11.67031 -11.26451 -10.55749 -10.48510 -10.39058 -10.01038 -9.97459 -9.89986 -9.26055 -8.73140 -8.59619 -6.58142 0.24965 0.30246 0.88209 0.98240 1.37234 1.50986 1.54094 2.16572 2.69537 2.71525 2.82880 3.11069 3.60085 3.66142 3.67647 3.73339 3.85303 3.91000 4.05894 4.13515 4.20853 4.23615 4.28005 4.32688 4.42924 4.52283 4.53103 4.64336 4.67402 4.71898 4.79127 4.88136 4.88579 4.93787 4.94655 5.03228 5.05732 5.07911 5.20008 5.24595 5.27186 5.30579 5.43983 5.55247 5.81034 5.83121 5.96203 6.00128 6.06125 6.30132 6.36964 6.68479 6.81348 6.85361 7.07351 7.68525 8.23229 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018818 B = 0.002619 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.569399 B =10687.483984 C =11307.151957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.038 3.962 3 Si 0.986 3.014 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.257 1.257 7 C -0.485 4.485 8 H 0.082 0.918 9 C 0.108 3.892 10 C -0.303 4.303 11 C 0.117 3.883 12 N -0.612 5.612 13 C 0.294 3.706 14 N -0.488 5.488 15 C 0.075 3.925 16 C -0.108 4.108 17 C 0.064 3.936 18 N -0.537 5.537 19 C 0.094 3.906 20 C -0.038 4.038 21 C -0.174 4.174 22 C 0.086 3.914 23 N -0.515 5.515 24 C 0.086 3.914 25 C -0.151 4.151 26 C 0.061 3.939 27 C 0.060 3.940 28 C -0.250 4.250 29 H 0.291 0.709 30 H 0.111 0.889 31 H 0.154 0.846 32 H 0.060 0.940 33 H 0.013 0.987 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.026 0.974 38 H 0.107 0.893 39 H 0.041 0.959 40 H 0.136 0.864 41 H 0.168 0.832 42 H 0.178 0.822 43 H 0.157 0.843 44 H 0.068 0.932 45 H 0.085 0.915 46 H 0.035 0.965 47 H 0.078 0.922 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.170 -7.870 -11.424 17.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.180 4.180 3 Si 0.806 3.194 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.180 1.180 7 C -0.516 4.516 8 H 0.101 0.899 9 C 0.100 3.900 10 C -0.327 4.327 11 C -0.036 4.036 12 N -0.333 5.333 13 C 0.068 3.932 14 N -0.206 5.206 15 C -0.053 4.053 16 C -0.146 4.146 17 C -0.062 4.062 18 N -0.262 5.262 19 C -0.033 4.033 20 C -0.047 4.047 21 C -0.195 4.195 22 C -0.070 4.070 23 N -0.224 5.224 24 C -0.070 4.070 25 C -0.171 4.171 26 C -0.067 4.067 27 C -0.067 4.067 28 C -0.275 4.275 29 H 0.102 0.898 30 H 0.129 0.871 31 H 0.171 0.829 32 H 0.079 0.921 33 H 0.031 0.969 34 H 0.093 0.907 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.044 0.956 38 H 0.125 0.875 39 H 0.060 0.940 40 H 0.154 0.846 41 H 0.185 0.815 42 H 0.195 0.805 43 H 0.175 0.825 44 H 0.087 0.913 45 H 0.103 0.897 46 H 0.054 0.946 47 H 0.096 0.904 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.303 -8.457 -11.102 18.605 hybrid contribution 3.082 1.158 0.171 3.297 sum -9.221 -7.300 -10.931 16.056 Atomic orbital electron populations 1.69859 1.09147 1.30974 1.33167 1.26866 0.95494 1.04726 0.90907 0.85146 0.79091 0.75485 0.79692 1.18482 1.19090 1.18010 1.19895 0.98329 0.91936 1.41416 0.89943 1.18128 0.90977 0.93431 0.87469 1.21764 1.06216 0.93913 1.10832 1.21864 0.90593 0.97852 0.93322 1.67273 1.16718 1.27811 1.21498 1.19626 0.89136 0.89757 0.94673 1.56419 1.26284 1.20711 1.17188 1.21212 0.97981 0.97916 0.88163 1.21535 0.95429 0.98016 0.99643 1.21889 0.94237 0.93173 0.96932 1.62218 1.50649 1.11506 1.01840 1.21063 0.94697 0.87687 0.99858 1.20301 0.95602 0.94413 0.94386 1.22236 1.01315 0.99353 0.96547 1.23002 0.87756 0.96666 0.99617 1.67684 1.23158 1.18369 1.13228 1.23207 1.00850 0.92491 0.90462 1.22250 0.92366 1.00074 1.02368 1.22029 0.92617 1.03019 0.89075 1.22117 0.95770 0.87424 1.01436 1.21578 1.02154 0.96426 1.07343 0.89764 0.87094 0.82913 0.92127 0.96917 0.90717 0.87894 0.87986 0.95621 0.87474 0.94047 0.84650 0.81505 0.80540 0.82549 0.91344 0.89721 0.94626 0.90355 0.86714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.40 10.90 21.84 0.24 -41.16 16 2 C 0.04 1.86 5.20 85.29 0.44 2.30 16 3 Si 0.99 36.81 29.59 68.60 2.03 38.84 16 4 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 5 H -0.27 -9.46 7.11 99.48 0.71 -8.75 16 6 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 7 C -0.49 -25.67 9.12 23.52 0.21 -25.46 16 8 H 0.08 4.17 7.90 -2.91 -0.02 4.15 16 9 C 0.11 5.87 5.61 -21.12 -0.12 5.75 16 10 C -0.30 -14.94 9.85 22.60 0.22 -14.72 16 11 C 0.12 5.30 11.10 84.26 0.94 6.24 16 12 N -0.61 -28.90 8.27 -194.48 -1.61 -30.51 16 13 C 0.29 14.19 6.36 132.90 0.84 15.04 16 14 N -0.49 -19.63 4.01 -717.26 -2.88 -22.51 16 15 C 0.08 2.66 4.80 88.05 0.42 3.09 16 16 C -0.11 -2.80 5.68 30.38 0.17 -2.62 16 17 C 0.06 1.40 4.97 85.35 0.42 1.83 16 18 N -0.54 -12.23 4.76 -904.15 -4.30 -16.53 16 19 C 0.09 1.76 5.06 85.56 0.43 2.19 16 20 C -0.04 -0.74 4.89 -19.67 -0.10 -0.84 16 21 C -0.17 -3.56 7.88 22.36 0.18 -3.38 16 22 C 0.09 1.79 11.18 84.68 0.95 2.73 16 23 N -0.51 -11.63 10.36 -195.85 -2.03 -13.65 16 24 C 0.09 1.56 11.18 84.68 0.95 2.51 16 25 C -0.15 -2.53 9.82 22.36 0.22 -2.31 16 26 C 0.06 1.71 5.09 85.42 0.44 2.15 16 27 C 0.06 2.06 4.81 85.43 0.41 2.47 16 28 C -0.25 -13.29 7.81 23.01 0.18 -13.11 16 29 H 0.29 13.47 8.29 -92.71 -0.77 12.70 16 30 H 0.11 5.03 8.06 -2.91 -0.02 5.00 16 31 H 0.15 5.72 8.06 -2.91 -0.02 5.70 16 32 H 0.06 2.41 6.40 -2.38 -0.02 2.40 16 33 H 0.01 0.46 7.60 -2.39 -0.02 0.44 16 34 H 0.07 2.14 7.19 -2.39 -0.02 2.12 16 35 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.03 0.61 6.40 -2.39 -0.02 0.60 16 38 H 0.11 1.53 8.04 -2.39 -0.02 1.51 16 39 H 0.04 0.84 7.62 -2.39 -0.02 0.82 16 40 H 0.14 2.66 7.67 -2.91 -0.02 2.64 16 41 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 42 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 43 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 44 H 0.07 2.23 7.20 -2.39 -0.02 2.22 16 45 H 0.08 2.25 4.67 -2.39 -0.01 2.24 16 46 H 0.04 1.20 6.27 -2.38 -0.01 1.19 16 47 H 0.08 3.00 6.83 -2.39 -0.02 2.98 16 48 H 0.12 6.35 5.21 -2.91 -0.02 6.33 16 Total: -1.00 -63.82 373.46 -0.36 -64.17 By element: Atomic # 1 Polarization: 36.53 SS G_CDS: 0.97 Total: 37.50 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: 7.21 Total: -16.15 kcal Atomic # 7 Polarization: -113.79 SS G_CDS: -10.57 Total: -124.36 kcal Atomic # 14 Polarization: 36.81 SS G_CDS: 2.03 Total: 38.84 kcal Total: -63.82 -0.36 -64.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163827610.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.765 kcal (2) G-P(sol) polarization free energy of solvation -63.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds