Wall clock time and date at job start Tue Mar 31 2020 21:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30584 * 1 3 3 Si 1.86804 * 119.99478 * 2 1 4 4 H 1.48502 * 109.46822 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47408 * 299.99813 * 3 2 1 6 6 H 1.48497 * 109.47102 * 60.00275 * 3 2 1 7 7 C 1.40353 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99947 * 197.18321 * 7 2 1 9 9 C 1.40169 * 119.99636 * 17.18522 * 7 2 1 10 10 C 1.39072 * 119.74336 * 202.61746 * 9 7 2 11 11 C 1.42027 * 118.74525 * 179.97438 * 10 9 7 12 12 N 1.32209 * 120.82962 * 179.97438 * 11 10 9 13 13 C 1.46504 * 119.99491 * 186.03631 * 12 11 10 14 14 C 1.50704 * 109.46581 * 119.42184 * 13 12 11 15 15 C 1.38676 * 120.41441 * 260.24433 * 14 13 12 16 16 C 1.38634 * 118.41719 * 180.24445 * 15 14 13 17 17 C 1.38224 * 119.16134 * 359.75865 * 16 15 14 18 18 N 1.31861 * 120.76576 * 359.97438 * 17 16 15 19 19 C 1.31879 * 121.72328 * 0.02562 * 18 17 16 20 20 C 1.50703 * 119.61709 * 179.97438 * 19 18 17 21 21 C 1.53112 * 109.52185 * 300.00088 * 20 19 18 22 22 C 1.53036 * 109.27806 * 177.62183 * 21 20 19 23 23 N 1.46846 * 109.52300 * 300.82181 * 22 21 20 24 24 C 1.46846 * 111.20190 * 61.74165 * 23 22 21 25 25 C 1.53039 * 109.51995 * 298.25866 * 24 23 22 26 26 C 1.46918 * 118.33210 * 0.25434 * 11 10 9 27 27 C 1.34370 * 119.36700 * 359.48108 * 26 11 10 28 28 N 1.36428 * 121.22623 * 0.53335 * 27 26 11 29 29 H 0.96996 * 119.09326 * 179.74225 * 28 27 26 30 30 H 0.97003 * 120.00620 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.62447 * 0.02562 * 10 9 7 32 32 H 1.08992 * 109.47422 * 359.41831 * 13 12 11 33 33 H 1.09001 * 109.47298 * 239.41686 * 13 12 11 34 34 H 1.07998 * 120.79174 * 359.97438 * 15 14 13 35 35 H 1.08004 * 120.41850 * 179.73312 * 16 15 14 36 36 H 1.08004 * 119.61977 * 180.02562 * 17 16 15 37 37 H 1.09002 * 109.52186 * 179.87511 * 20 19 18 38 38 H 1.09000 * 109.50613 * 57.67993 * 21 20 19 39 39 H 1.09006 * 109.53765 * 297.58134 * 21 20 19 40 40 H 1.09004 * 109.46379 * 180.80637 * 22 21 20 41 41 H 1.09001 * 109.45727 * 60.83429 * 22 21 20 42 42 H 1.00902 * 111.00041 * 185.84165 * 23 22 21 43 43 H 1.09005 * 109.46106 * 58.26777 * 24 23 22 44 44 H 1.08993 * 109.46806 * 178.24133 * 24 23 22 45 45 H 1.08998 * 109.50498 * 299.23710 * 25 24 23 46 46 H 1.09005 * 109.53425 * 179.13243 * 25 24 23 47 47 H 1.08001 * 120.31189 * 179.72245 * 26 11 10 48 48 H 1.08007 * 119.38537 * 180.25061 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2397 1.6179 0.0000 4 1 3.6997 1.3466 0.0006 5 1 1.8810 2.3965 -1.2124 6 1 1.8809 2.3965 1.2125 7 6 2.0077 -1.2154 -0.0005 8 1 3.0515 -1.2364 0.2758 9 6 1.3538 -2.4021 -0.3597 10 6 1.8568 -3.6248 0.0714 11 6 1.1772 -4.8139 -0.3045 12 7 1.6196 -5.9983 0.0821 13 6 0.9843 -7.2180 -0.4230 14 6 2.0002 -8.0389 -1.1749 15 6 2.0475 -8.0004 -2.5603 16 6 2.9952 -8.7761 -3.2099 17 6 3.8586 -9.5527 -2.4602 18 7 3.7882 -9.5605 -1.1435 19 6 2.8997 -8.8355 -0.4923 20 6 2.8609 -8.8809 1.0135 21 6 2.5853 -10.3144 1.4753 22 6 2.6059 -10.3654 3.0047 23 7 3.9167 -9.9183 3.4929 24 6 4.1831 -8.5281 3.1020 25 6 4.2095 -8.4223 1.5755 26 6 -0.0263 -4.6951 -1.1388 27 6 -0.4525 -3.4762 -1.5107 28 7 0.2175 -2.3481 -1.1369 29 1 -0.1156 -1.4842 -1.4260 30 1 -0.4851 0.8400 -0.0004 31 1 2.7470 -3.6693 0.6813 32 1 0.1659 -6.9513 -1.0916 33 1 0.5955 -7.7984 0.4136 34 1 1.3595 -7.3841 -3.1200 35 1 3.0579 -8.7739 -4.2881 36 1 4.6001 -10.1595 -2.9587 37 1 2.0718 -8.2228 1.3776 38 1 3.3532 -10.9786 1.0786 39 1 1.6072 -10.6322 1.1138 40 1 2.4242 -11.3877 3.3365 41 1 1.8287 -9.7116 3.4003 42 1 3.9884 -10.0328 4.4929 43 1 3.3983 -7.8830 3.4972 44 1 5.1467 -8.2159 3.5043 45 1 5.0030 -9.0567 1.1804 46 1 4.3919 -7.3877 1.2849 47 1 -0.5654 -5.5787 -1.4469 48 1 -1.3395 -3.3883 -2.1207 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163915168.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:37 Heat of formation + Delta-G solvation = 48.167418 kcal Electronic energy + Delta-G solvation = -28705.573309 eV Core-core repulsion = 24951.612896 eV Total energy + Delta-G solvation = -3753.960413 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.180 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.47690 -40.29087 -39.14175 -36.84211 -35.47458 -34.41355 -33.61642 -32.38098 -31.72899 -31.34723 -30.01677 -28.23561 -26.44667 -25.69543 -23.88075 -23.60174 -23.05200 -22.62560 -21.56926 -20.51160 -19.77966 -18.39902 -17.89733 -17.65893 -17.18926 -16.89470 -16.60051 -16.07488 -15.80016 -15.53885 -15.34426 -15.13291 -14.95623 -14.65206 -14.57714 -14.47322 -14.13563 -13.90339 -13.80922 -13.69715 -13.24246 -13.12963 -13.03717 -12.88210 -12.81488 -12.60300 -12.37482 -12.13382 -11.86079 -11.78166 -11.48749 -11.44754 -11.35817 -11.09451 -10.64171 -10.23653 -10.00636 -9.74905 -9.41773 -9.18749 -8.99524 -7.75787 -6.65617 0.25516 0.40565 0.93233 1.08720 1.40866 1.54663 1.59466 2.14902 2.53442 2.87695 2.93330 3.29360 3.42039 3.48301 3.74135 3.91913 3.96169 4.02289 4.10580 4.12097 4.22450 4.28786 4.34038 4.42930 4.50316 4.59877 4.63995 4.69038 4.70765 4.79831 4.87211 4.89761 4.91803 4.96805 4.99182 5.03272 5.05439 5.17206 5.18138 5.25513 5.27338 5.47894 5.55537 5.63689 5.79439 5.90148 5.97978 6.03126 6.08633 6.44536 6.49901 6.54393 6.99847 7.13861 7.17929 7.94108 8.01661 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012688 B = 0.002846 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.228392 B = 9836.209274 C =10894.511380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.051 3.949 3 Si 0.993 3.007 4 H -0.263 1.263 5 H -0.253 1.253 6 H -0.265 1.265 7 C -0.495 4.495 8 H 0.093 0.907 9 C 0.322 3.678 10 C -0.401 4.401 11 C 0.267 3.733 12 N -0.684 5.684 13 C 0.104 3.896 14 C -0.125 4.125 15 C -0.089 4.089 16 C -0.173 4.173 17 C 0.078 3.922 18 N -0.497 5.497 19 C 0.133 3.867 20 C -0.030 4.030 21 C -0.098 4.098 22 C 0.062 3.938 23 N -0.688 5.688 24 C 0.066 3.934 25 C -0.090 4.090 26 C -0.320 4.320 27 C 0.139 3.861 28 N -0.602 5.602 29 H 0.418 0.582 30 H 0.307 0.693 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.050 0.950 34 H 0.134 0.866 35 H 0.164 0.836 36 H 0.183 0.817 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.096 0.904 41 H 0.025 0.975 42 H 0.354 0.646 43 H 0.021 0.979 44 H 0.085 0.915 45 H 0.065 0.935 46 H 0.039 0.961 47 H 0.137 0.863 48 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.621 -8.872 -3.300 9.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.167 4.167 3 Si 0.813 3.187 4 H -0.187 1.187 5 H -0.177 1.177 6 H -0.190 1.190 7 C -0.527 4.527 8 H 0.111 0.889 9 C 0.213 3.787 10 C -0.430 4.430 11 C 0.105 3.895 12 N -0.411 5.411 13 C -0.027 4.027 14 C -0.128 4.128 15 C -0.115 4.115 16 C -0.192 4.192 17 C -0.079 4.079 18 N -0.205 5.205 19 C -0.004 4.004 20 C -0.050 4.050 21 C -0.136 4.136 22 C -0.068 4.068 23 N -0.321 5.321 24 C -0.064 4.064 25 C -0.128 4.128 26 C -0.350 4.350 27 C 0.009 3.991 28 N -0.214 5.214 29 H 0.259 0.741 30 H 0.118 0.882 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.152 0.848 35 H 0.181 0.819 36 H 0.200 0.800 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.114 0.886 41 H 0.044 0.956 42 H 0.173 0.827 43 H 0.039 0.961 44 H 0.103 0.897 45 H 0.084 0.916 46 H 0.057 0.943 47 H 0.154 0.846 48 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 0.698 -10.074 -2.804 10.480 hybrid contribution -1.763 2.165 -0.381 2.818 sum -1.065 -7.908 -3.185 8.592 Atomic orbital electron populations 1.69311 1.08682 1.32645 1.34162 1.26894 0.95677 1.04706 0.89416 0.84960 0.79203 0.75059 0.79493 1.18689 1.17698 1.18987 1.19736 0.99397 0.90944 1.42584 0.88919 1.17701 0.82408 0.94073 0.84520 1.20097 1.09804 0.89857 1.23238 1.20409 0.89104 0.92673 0.87322 1.73435 1.36934 0.96022 1.34678 1.20598 0.93017 0.93133 0.95946 1.21049 0.99300 0.97527 0.94899 1.21705 0.98640 0.97571 0.93600 1.22372 0.96329 0.97839 1.02673 1.23222 0.98143 0.97412 0.89143 1.67426 1.21219 1.20946 1.10938 1.21043 0.90637 0.92080 0.96637 1.20072 0.98685 0.97904 0.88318 1.21521 1.01420 0.94958 0.95721 1.21922 0.89334 1.00949 0.94564 1.60260 1.31417 1.21212 1.19221 1.21812 1.00754 0.88866 0.94958 1.21329 0.96555 0.99556 0.95368 1.22356 1.03398 0.97087 1.12150 1.21934 0.95720 0.86159 0.95242 1.42095 1.24738 1.09491 1.45057 0.74104 0.88157 0.89987 0.94067 0.93181 0.84795 0.81875 0.80027 0.90991 0.91215 0.91925 0.88569 0.95643 0.82710 0.96097 0.89651 0.91645 0.94256 0.84587 0.79933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -33.91 11.12 21.89 0.24 -33.67 16 2 C 0.05 2.14 5.18 85.39 0.44 2.58 16 3 Si 0.99 31.97 29.60 68.60 2.03 34.00 16 4 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 5 H -0.25 -7.51 7.11 99.48 0.71 -6.80 16 6 H -0.27 -8.35 7.11 99.48 0.71 -7.64 16 7 C -0.49 -23.72 9.03 23.25 0.21 -23.51 16 8 H 0.09 4.50 7.91 -2.91 -0.02 4.47 16 9 C 0.32 15.92 6.37 38.88 0.25 16.17 16 10 C -0.40 -21.34 9.83 23.41 0.23 -21.11 16 11 C 0.27 13.23 6.80 42.30 0.29 13.52 16 12 N -0.68 -33.26 10.44 -338.70 -3.54 -36.80 16 13 C 0.10 4.22 5.52 85.63 0.47 4.69 16 14 C -0.13 -4.71 5.48 -19.77 -0.11 -4.82 16 15 C -0.09 -2.88 9.82 22.47 0.22 -2.66 16 16 C -0.17 -4.60 10.11 22.36 0.23 -4.38 16 17 C 0.08 2.18 11.18 84.69 0.95 3.13 16 18 N -0.50 -16.90 9.73 -183.88 -1.79 -18.69 16 19 C 0.13 4.90 5.47 42.54 0.23 5.13 16 20 C -0.03 -1.06 2.30 -11.46 -0.03 -1.09 16 21 C -0.10 -2.82 5.30 30.64 0.16 -2.65 16 22 C 0.06 1.49 6.55 86.33 0.57 2.05 16 23 N -0.69 -16.87 6.84 -514.01 -3.52 -20.39 16 24 C 0.07 1.89 6.55 86.33 0.57 2.45 16 25 C -0.09 -3.11 5.30 30.65 0.16 -2.95 16 26 C -0.32 -13.09 9.39 23.66 0.22 -12.87 16 27 C 0.14 5.05 11.15 83.09 0.93 5.97 16 28 N -0.60 -25.33 4.89 -188.18 -0.92 -26.25 16 29 H 0.42 16.47 6.34 -92.71 -0.59 15.88 16 30 H 0.31 11.05 8.29 -92.71 -0.77 10.28 16 31 H 0.08 4.67 8.06 -2.91 -0.02 4.65 16 32 H 0.04 1.58 5.11 -2.39 -0.01 1.57 16 33 H 0.05 2.02 6.71 -2.39 -0.02 2.00 16 34 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 35 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 36 H 0.18 3.63 8.06 -2.91 -0.02 3.61 16 37 H 0.07 2.84 5.57 -2.39 -0.01 2.82 16 38 H 0.07 2.11 7.98 -2.39 -0.02 2.09 16 39 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 41 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.35 6.78 8.90 -89.69 -0.80 5.98 16 43 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 44 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.06 2.31 7.98 -2.39 -0.02 2.29 16 46 H 0.04 1.57 8.14 -2.38 -0.02 1.56 16 47 H 0.14 4.90 5.90 -2.91 -0.02 4.88 16 48 H 0.18 4.63 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -62.12 385.09 -1.89 -64.01 By element: Atomic # 1 Polarization: 58.50 SS G_CDS: -0.39 Total: 58.11 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: 5.99 Total: -20.32 kcal Atomic # 7 Polarization: -126.27 SS G_CDS: -9.52 Total: -135.80 kcal Atomic # 14 Polarization: 31.97 SS G_CDS: 2.03 Total: 34.00 kcal Total: -62.12 -1.89 -64.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163915168.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.178 kcal (2) G-P(sol) polarization free energy of solvation -62.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds