Wall clock time and date at job start Tue Mar 31 2020 21:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30722 * 1 3 3 Si 1.86806 * 119.99931 * 2 1 4 4 H 1.48497 * 109.47501 * 270.00289 * 3 2 1 5 5 H 1.48506 * 109.46808 * 30.00064 * 3 2 1 6 6 H 1.48494 * 109.47223 * 149.99705 * 3 2 1 7 7 C 1.40055 * 120.00523 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00472 * 186.39642 * 7 2 1 9 9 C 1.41267 * 119.99479 * 6.38879 * 7 2 1 10 10 C 1.40729 * 120.15729 * 173.93836 * 9 7 2 11 11 N 1.31899 * 119.93188 * 180.02562 * 10 9 7 12 12 C 1.32156 * 120.27156 * 359.97438 * 11 10 9 13 13 C 1.39919 * 120.32065 * 359.97438 * 12 11 10 14 14 N 1.38830 * 119.96787 * 179.97438 * 13 12 11 15 15 C 1.46848 * 110.99663 * 0.02562 * 14 13 12 16 16 C 1.53041 * 109.51861 * 174.15993 * 15 14 13 17 17 C 1.53121 * 109.27866 * 59.18115 * 16 15 14 18 18 C 1.52996 * 109.52024 * 62.24867 * 17 16 15 19 19 N 1.46901 * 109.47063 * 179.97438 * 18 17 16 20 20 C 1.50704 * 109.52151 * 182.43779 * 17 16 15 21 21 C 1.38235 * 119.99758 * 359.72884 * 20 17 16 22 22 C 1.38242 * 119.99642 * 179.79109 * 21 20 17 23 23 C 1.38237 * 119.99732 * 0.43552 * 22 21 20 24 24 C 1.38232 * 119.99933 * 359.81333 * 23 22 21 25 25 C 1.38226 * 119.99798 * 179.97438 * 20 17 16 26 26 C 1.53119 * 109.15869 * 302.34337 * 17 16 15 27 27 C 1.46848 * 110.99923 * 235.79556 * 14 13 12 28 28 N 1.32263 * 120.06497 * 0.25827 * 13 12 11 29 29 H 0.97004 * 120.00514 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.03226 * 0.02562 * 10 9 7 31 31 H 1.07997 * 119.83569 * 180.02562 * 12 11 10 32 32 H 1.08999 * 109.46261 * 54.14926 * 15 14 13 33 33 H 1.08997 * 109.45854 * 294.16943 * 15 14 13 34 34 H 1.08999 * 109.49884 * 179.12149 * 16 15 14 35 35 H 1.08995 * 109.50345 * 299.23739 * 16 15 14 36 36 H 1.08999 * 109.47385 * 299.99756 * 18 17 16 37 37 H 1.09005 * 109.47744 * 60.00217 * 18 17 16 38 38 H 1.00904 * 110.99468 * 56.04747 * 19 18 17 39 39 H 1.00900 * 111.00479 * 180.02562 * 19 18 17 40 40 H 1.07996 * 120.00476 * 359.97438 * 21 20 17 41 41 H 1.07993 * 119.99756 * 180.27265 * 22 21 20 42 42 H 1.08002 * 119.99860 * 179.84020 * 23 22 21 43 43 H 1.08007 * 119.99954 * 179.97438 * 24 23 22 44 44 H 1.08006 * 120.00269 * 359.97438 * 25 20 17 45 45 H 1.08996 * 109.49976 * 297.71021 * 26 17 16 46 46 H 1.09001 * 109.53091 * 177.61446 * 26 17 16 47 47 H 1.09007 * 109.45980 * 305.85070 * 27 14 13 48 48 H 1.08992 * 109.46538 * 65.82081 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 2.4887 2.0466 -1.4000 5 1 1.4386 2.6527 0.7001 6 1 3.5387 1.4403 0.7001 7 6 2.0076 -1.2128 -0.0005 8 1 3.0826 -1.2158 0.1037 9 6 1.3078 -2.4324 -0.1372 10 6 2.0147 -3.6424 -0.2663 11 7 1.3568 -4.7785 -0.3942 12 6 0.0353 -4.7859 -0.4012 13 6 -0.6785 -3.5894 -0.2725 14 7 -2.0667 -3.6057 -0.2814 15 6 -2.5759 -4.9745 -0.4346 16 6 -4.0999 -4.9718 -0.2944 17 6 -4.7045 -4.0594 -1.3652 18 6 -4.3662 -4.6065 -2.7534 19 7 -4.9472 -3.7308 -3.7798 20 6 -6.2009 -4.0056 -1.1946 21 6 -6.8076 -4.7270 -0.1835 22 6 -8.1798 -4.6742 -0.0243 23 6 -8.9460 -3.9071 -0.8818 24 6 -8.3397 -3.1898 -1.8960 25 6 -6.9671 -3.2389 -2.0523 26 6 -4.1212 -2.6518 -1.2138 27 6 -2.5967 -2.7213 -1.3270 28 7 -0.0320 -2.4423 -0.1482 29 1 -0.4851 0.8400 -0.0004 30 1 3.0947 -3.6408 -0.2606 31 1 -0.4962 -5.7202 -0.5059 32 1 -2.1415 -5.6119 0.3355 33 1 -2.3024 -5.3556 -1.4185 34 1 -4.4789 -5.9855 -0.4237 35 1 -4.3737 -4.6036 0.6943 36 1 -3.2837 -4.6421 -2.8761 37 1 -4.7769 -5.6108 -2.8583 38 1 -4.6318 -2.7793 -3.6640 39 1 -4.7380 -4.0712 -4.7063 40 1 -6.2093 -5.3295 0.4839 41 1 -8.6533 -5.2343 0.7684 42 1 -10.0183 -3.8679 -0.7590 43 1 -8.9384 -2.5908 -2.5663 44 1 -6.4934 -2.6780 -2.8445 45 1 -4.3954 -2.2472 -0.2396 46 1 -4.5155 -2.0075 -1.9996 47 1 -2.1772 -1.7226 -1.2050 48 1 -2.3230 -3.1127 -2.3068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164438817.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:55 Heat of formation + Delta-G solvation = 69.956995 kcal Electronic energy + Delta-G solvation = -29723.985902 eV Core-core repulsion = 25970.970356 eV Total energy + Delta-G solvation = -3753.015546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.180 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.92105 -40.73919 -39.08961 -36.72626 -35.85526 -34.02777 -33.33830 -32.25666 -31.66247 -31.30637 -30.05355 -27.84315 -26.68153 -25.15243 -24.77778 -23.71783 -23.11223 -22.44961 -21.96075 -19.66302 -19.23884 -18.34500 -17.71492 -17.31738 -17.20814 -16.70330 -16.58469 -16.36847 -15.78208 -15.65455 -15.36204 -15.09936 -14.94914 -14.87880 -14.37090 -14.22816 -14.09448 -13.79971 -13.46650 -13.33253 -13.21843 -13.03081 -12.96723 -12.86238 -12.63816 -12.39158 -12.16558 -12.04313 -11.93964 -11.76033 -11.61860 -11.45993 -11.30509 -11.19580 -11.11752 -10.25495 -9.67241 -9.44416 -9.41213 -9.39984 -8.81036 -8.32876 -6.67497 0.62776 0.63202 0.72658 1.11432 1.41283 1.53109 1.55562 2.18870 2.64898 2.83895 3.04910 3.52159 3.63400 3.74265 3.79342 3.92525 4.05413 4.09100 4.16690 4.22252 4.29073 4.31262 4.34411 4.37037 4.49743 4.52333 4.59484 4.64831 4.70114 4.78208 4.82856 4.89700 4.92763 4.96122 4.98754 5.10443 5.13048 5.19157 5.21053 5.30382 5.34585 5.41463 5.62580 5.77017 5.82335 5.93041 5.97022 6.11042 6.18012 6.23225 6.32363 6.55885 6.58238 6.77629 7.35308 7.95401 8.30541 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015255 B = 0.003144 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.068427 B = 8902.504053 C = 9864.473430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.024 3.976 3 Si 0.992 3.008 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.253 1.253 7 C -0.435 4.435 8 H 0.102 0.898 9 C 0.196 3.804 10 C -0.110 4.110 11 N -0.425 5.425 12 C -0.169 4.169 13 C 0.285 3.715 14 N -0.476 5.476 15 C 0.057 3.943 16 C -0.099 4.099 17 C -0.008 4.008 18 C 0.077 3.923 19 N -0.841 5.841 20 C -0.071 4.071 21 C -0.135 4.135 22 C -0.137 4.137 23 C -0.134 4.134 24 C -0.140 4.140 25 C -0.097 4.097 26 C -0.090 4.090 27 C 0.081 3.919 28 N -0.495 5.495 29 H 0.283 0.717 30 H 0.145 0.855 31 H 0.153 0.847 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.021 0.979 37 H 0.077 0.923 38 H 0.341 0.659 39 H 0.348 0.652 40 H 0.129 0.871 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.131 0.869 44 H 0.142 0.858 45 H 0.060 0.940 46 H 0.084 0.916 47 H 0.065 0.935 48 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.979 -3.633 -4.980 17.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.355 5.355 2 C -0.201 4.201 3 Si 0.812 3.188 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.176 1.176 7 C -0.466 4.466 8 H 0.120 0.880 9 C 0.069 3.931 10 C -0.280 4.280 11 N -0.137 5.137 12 C -0.331 4.331 13 C 0.042 3.958 14 N -0.194 5.194 15 C -0.070 4.070 16 C -0.137 4.137 17 C -0.008 4.008 18 C -0.054 4.054 19 N -0.372 5.372 20 C -0.071 4.071 21 C -0.153 4.153 22 C -0.155 4.155 23 C -0.152 4.152 24 C -0.158 4.158 25 C -0.115 4.115 26 C -0.128 4.128 27 C -0.045 4.045 28 N -0.217 5.217 29 H 0.094 0.906 30 H 0.162 0.838 31 H 0.170 0.830 32 H 0.097 0.903 33 H 0.065 0.935 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.039 0.961 37 H 0.095 0.905 38 H 0.155 0.845 39 H 0.161 0.839 40 H 0.147 0.853 41 H 0.151 0.849 42 H 0.152 0.848 43 H 0.149 0.851 44 H 0.159 0.841 45 H 0.079 0.921 46 H 0.103 0.897 47 H 0.084 0.916 48 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -17.117 -3.556 -4.229 17.987 hybrid contribution 1.917 0.429 -0.681 2.080 sum -15.200 -3.126 -4.910 16.276 Atomic orbital electron populations 1.70186 1.08938 1.29699 1.26716 1.27073 0.95785 1.04668 0.92527 0.85051 0.79060 0.75188 0.79544 1.18667 1.19295 1.17615 1.20061 0.95787 0.89854 1.40927 0.88012 1.19688 0.88797 0.94415 0.90196 1.23231 0.99862 0.89244 1.15619 1.67562 1.09355 1.30038 1.06749 1.23051 0.90876 0.98100 1.21026 1.21090 0.90601 0.91590 0.92470 1.58248 1.03372 1.11274 1.46503 1.22330 0.96380 0.87386 1.00929 1.21744 0.92046 1.00705 0.99214 1.19461 0.91443 0.94928 0.94985 1.21774 0.95923 0.97157 0.90556 1.58973 1.65655 1.06130 1.06472 1.19631 0.93816 0.97731 0.95954 1.21390 0.95350 1.00165 0.98364 1.21328 0.93877 1.00116 1.00142 1.21397 1.00569 0.97508 0.95757 1.21424 0.95168 1.00302 0.98873 1.21488 0.93611 0.98193 0.98199 1.21602 0.91939 0.96676 1.02579 1.21943 0.95750 0.96681 0.90126 1.69179 1.08175 1.24276 1.20086 0.90582 0.83784 0.83017 0.90253 0.93550 0.88508 0.90858 0.96092 0.90463 0.84534 0.83877 0.85270 0.84901 0.84829 0.85083 0.84079 0.92146 0.89745 0.91644 0.95622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -37.55 11.51 21.84 0.25 -37.30 16 2 C 0.02 1.15 5.49 85.30 0.47 1.61 16 3 Si 0.99 35.89 29.56 68.60 2.03 37.92 16 4 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 5 H -0.27 -9.34 7.11 99.48 0.71 -8.64 16 6 H -0.25 -8.79 7.11 99.48 0.71 -8.08 16 7 C -0.43 -22.59 9.15 23.46 0.21 -22.38 16 8 H 0.10 4.85 7.86 -2.91 -0.02 4.82 16 9 C 0.20 10.85 6.54 40.17 0.26 11.11 16 10 C -0.11 -5.75 10.97 85.29 0.94 -4.82 16 11 N -0.43 -21.66 10.47 -192.23 -2.01 -23.67 16 12 C -0.17 -8.04 10.00 85.05 0.85 -7.19 16 13 C 0.29 13.90 6.46 133.35 0.86 14.76 16 14 N -0.48 -18.89 4.72 -701.48 -3.31 -22.21 16 15 C 0.06 1.74 3.89 86.33 0.34 2.08 16 16 C -0.10 -2.38 3.54 30.65 0.11 -2.28 16 17 C -0.01 -0.18 0.50 -52.85 -0.03 -0.20 16 18 C 0.08 1.66 5.15 86.30 0.44 2.10 16 19 N -0.84 -15.41 6.80 -186.72 -1.27 -16.68 16 20 C -0.07 -1.62 4.77 -19.87 -0.09 -1.71 16 21 C -0.13 -2.90 8.98 22.27 0.20 -2.70 16 22 C -0.14 -2.66 10.05 22.27 0.22 -2.44 16 23 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 24 C -0.14 -2.76 10.05 22.27 0.22 -2.53 16 25 C -0.10 -2.11 8.29 22.27 0.18 -1.92 16 26 C -0.09 -2.52 4.39 30.64 0.13 -2.38 16 27 C 0.08 2.95 5.09 86.32 0.44 3.39 16 28 N -0.49 -27.18 7.34 -186.00 -1.37 -28.54 16 29 H 0.28 13.05 8.29 -92.71 -0.77 12.28 16 30 H 0.14 6.82 8.06 -2.91 -0.02 6.80 16 31 H 0.15 6.20 5.78 -2.91 -0.02 6.19 16 32 H 0.08 2.47 6.96 -2.39 -0.02 2.45 16 33 H 0.05 1.39 6.09 -2.39 -0.01 1.38 16 34 H 0.10 1.86 7.66 -2.39 -0.02 1.85 16 35 H 0.07 1.87 7.38 -2.39 -0.02 1.85 16 36 H 0.02 0.53 4.92 -2.39 -0.01 0.52 16 37 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.34 6.31 6.58 -89.69 -0.59 5.72 16 39 H 0.35 5.35 9.08 -89.69 -0.81 4.54 16 40 H 0.13 2.51 5.90 -2.91 -0.02 2.49 16 41 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 42 H 0.13 1.87 8.06 -2.91 -0.02 1.84 16 43 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 44 H 0.14 2.91 5.34 -2.91 -0.02 2.90 16 45 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.08 2.07 5.84 -2.39 -0.01 2.05 16 47 H 0.06 2.91 7.59 -2.38 -0.02 2.89 16 48 H 0.03 0.92 6.51 -2.39 -0.02 0.91 16 Total: -1.00 -64.45 365.37 -0.08 -64.52 By element: Atomic # 1 Polarization: 44.14 SS G_CDS: -0.38 Total: 43.75 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: 5.99 Total: -17.79 kcal Atomic # 7 Polarization: -120.69 SS G_CDS: -7.71 Total: -128.40 kcal Atomic # 14 Polarization: 35.89 SS G_CDS: 2.03 Total: 37.92 kcal Total: -64.45 -0.08 -64.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164438817.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.478 kcal (2) G-P(sol) polarization free energy of solvation -64.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds