Wall clock time and date at job start Tue Mar 31 2020 21:59:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30747 * 1
3 3 Si 1.86800 * 119.99971 * 2 1
4 4 H 1.48510 * 109.46875 * 239.99607 * 3 2 1
5 5 H 1.48502 * 109.47366 * 359.97438 * 3 2 1
6 6 H 1.48497 * 109.47523 * 120.00035 * 3 2 1
7 7 C 1.40019 * 119.99761 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99900 * 196.99310 * 7 2 1
9 9 C 1.41553 * 120.00095 * 16.99253 * 7 2 1
10 10 C 1.41193 * 120.99167 * 203.28441 * 9 7 2
11 11 C 1.36554 * 119.14524 * 180.02562 * 10 9 7
12 12 N 1.32105 * 121.26662 * 359.97438 * 11 10 9
13 13 C 1.32529 * 122.21599 * 0.02562 * 12 11 10
14 14 N 1.39084 * 119.65063 * 179.97438 * 13 12 11
15 15 C 1.46948 * 111.00339 * 0.02562 * 14 13 12
16 16 C 1.53057 * 109.36595 * 183.18700 * 15 14 13
17 17 N 1.46957 * 109.36182 * 301.60257 * 16 15 14
18 18 C 1.46902 * 110.99883 * 183.19120 * 17 16 15
19 19 C 1.52999 * 109.47249 * 169.99699 * 18 17 16
20 20 C 1.50706 * 109.46913 * 179.97438 * 19 18 17
21 21 C 1.38652 * 120.78907 * 270.29781 * 20 19 18
22 22 C 1.38205 * 119.15508 * 180.22613 * 21 20 19
23 23 N 1.31866 * 120.76918 * 359.47291 * 22 21 20
24 24 C 1.31872 * 121.72340 * 0.27582 * 23 22 21
25 25 C 1.38203 * 120.76673 * 359.97438 * 24 23 22
26 26 C 1.46948 * 110.88408 * 59.31813 * 17 16 15
27 27 C 1.46957 * 110.99499 * 123.80408 * 14 13 12
28 28 C 1.38740 * 120.68758 * 0.25381 * 13 12 11
29 29 H 0.96999 * 119.99735 * 0.02562 * 1 2 3
30 30 H 1.07999 * 120.42780 * 0.04559 * 10 9 7
31 31 H 1.08001 * 119.36965 * 179.97438 * 11 10 9
32 32 H 1.09004 * 109.49342 * 63.22075 * 15 14 13
33 33 H 1.08997 * 109.49025 * 303.15456 * 15 14 13
34 34 H 1.09002 * 109.49009 * 181.63235 * 16 15 14
35 35 H 1.08993 * 109.48701 * 61.56474 * 16 15 14
36 36 H 1.08999 * 109.47108 * 49.99010 * 18 17 16
37 37 H 1.09011 * 109.46560 * 289.99515 * 18 17 16
38 38 H 1.09000 * 109.46886 * 59.99646 * 19 18 17
39 39 H 1.08995 * 109.46862 * 299.99627 * 19 18 17
40 40 H 1.07997 * 120.41944 * 0.02562 * 21 20 19
41 41 H 1.08006 * 119.61254 * 179.75545 * 22 21 20
42 42 H 1.08004 * 119.61494 * 180.02562 * 24 23 22
43 43 H 1.08001 * 120.42178 * 180.02562 * 25 24 23
44 44 H 1.08996 * 109.49239 * 60.64238 * 26 17 16
45 45 H 1.09006 * 109.49142 * 180.71414 * 26 17 16
46 46 H 1.09006 * 109.48774 * 296.77555 * 27 14 13
47 47 H 1.08994 * 109.49620 * 56.81757 * 27 14 13
48 48 H 1.08001 * 120.66753 * 179.72043 * 28 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3075 0.0000 0.0000
3 14 2.2415 1.6177 0.0000
4 1 3.0953 1.6963 -1.2125
5 1 1.2765 2.7465 -0.0006
6 1 3.0952 1.6965 1.2124
7 6 2.0075 -1.2126 0.0005
8 1 3.0522 -1.2330 0.2739
9 6 1.3461 -2.4119 -0.3572
10 6 1.8271 -3.6655 0.0794
11 6 1.1598 -4.7987 -0.2885
12 7 0.0763 -4.7422 -1.0422
13 6 -0.4202 -3.5944 -1.4808
14 7 -1.5641 -3.5971 -2.2720
15 6 -2.0484 -4.9668 -2.4930
16 6 -3.2578 -4.9324 -3.4305
17 7 -4.3095 -4.0940 -2.8384
18 6 -5.5177 -4.0968 -3.6740
19 6 -6.6646 -3.4268 -2.9147
20 6 -7.9039 -3.4292 -3.7722
21 6 -8.1706 -2.3787 -4.6370
22 6 -9.3195 -2.4135 -5.4044
23 7 -10.1509 -3.4341 -5.3283
24 6 -9.9267 -4.4525 -4.5210
25 6 -8.8012 -4.4849 -3.7197
26 6 -3.8252 -2.7243 -2.6174
27 6 -2.6160 -2.7592 -1.6796
28 6 0.1924 -2.3907 -1.1636
29 1 -0.4850 0.8401 -0.0004
30 1 2.7111 -3.7274 0.6966
31 1 1.5247 -5.7596 0.0431
32 1 -2.3398 -5.4078 -1.5397
33 1 -1.2560 -5.5645 -2.9435
34 1 -3.6365 -5.9446 -3.5728
35 1 -2.9600 -4.5165 -4.3930
36 1 -5.7916 -5.1243 -3.9133
37 1 -5.3231 -3.5486 -4.5959
38 1 -6.3906 -2.3993 -2.6754
39 1 -6.8591 -3.9750 -1.9929
40 1 -7.4908 -1.5425 -4.7076
41 1 -9.5365 -1.5972 -6.0775
42 1 -10.6305 -5.2710 -4.4862
43 1 -8.6229 -5.3219 -3.0608
44 1 -3.5338 -2.2833 -3.5706
45 1 -4.6176 -2.1266 -2.1669
46 1 -2.9137 -3.1755 -0.7172
47 1 -2.2375 -1.7471 -1.5366
48 1 -0.2100 -1.4558 -1.5249
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001165059988.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:59:40
Heat of formation + Delta-G solvation = 78.125265 kcal
Electronic energy + Delta-G solvation = -28148.382104 eV
Core-core repulsion = 24395.720761 eV
Total energy + Delta-G solvation = -3752.661344 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 338.180 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-40.46251 -39.56773 -38.04860 -35.75822 -34.20227 -33.68569 -31.47051 -30.95502
-30.54891 -29.95006 -28.36252 -26.13034 -25.63607 -23.74788 -23.50719 -23.15393
-21.51267 -21.15454 -20.69935 -19.40651 -17.70284 -16.94042 -16.67111 -16.12331
-15.85224 -15.50444 -15.08790 -14.88680 -14.71286 -14.55316 -14.36977 -14.05470
-14.00037 -13.91478 -13.51244 -13.18673 -13.00238 -12.66227 -12.52626 -12.32779
-12.04399 -11.93906 -11.71052 -11.39053 -11.25182 -11.19024 -10.96761 -10.90211
-10.65008 -10.48792 -10.27645 -9.95667 -9.77387 -9.71189 -9.43817 -9.43467
-8.86226 -8.29233 -8.07294 -7.95918 -7.00760 -6.79604 -4.61701 0.85710
0.96609 2.71260 2.82505 2.99762 3.02427 3.22615 3.51514 3.83133
3.83988 4.18978 4.34972 4.45988 4.52354 4.69213 4.81097 4.84364
4.89237 5.01300 5.13237 5.27100 5.32927 5.43683 5.44744 5.53409
5.56212 5.62961 5.67333 5.70939 5.74658 5.81592 5.89338 5.93633
6.06581 6.14857 6.32800 6.39332 6.43511 6.50639 6.62242 6.79221
6.88475 7.00113 7.06693 7.12877 7.18212 7.42791 7.57495 7.69536
7.71657 7.89765 8.22608 8.56938 8.73619 8.76540 9.57497 10.04216
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.015664 B = 0.002286 C = 0.002036
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1787.154896 B =12246.978317 C =13745.895130
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.784 5.784
2 C 0.079 3.921
3 Si 0.911 3.089
4 H -0.262 1.262
5 H -0.277 1.277
6 H -0.264 1.264
7 C -0.454 4.454
8 H 0.081 0.919
9 C 0.137 3.863
10 C -0.283 4.283
11 C 0.116 3.884
12 N -0.603 5.603
13 C 0.290 3.710
14 N -0.479 5.479
15 C 0.077 3.923
16 C 0.056 3.944
17 N -0.540 5.540
18 C 0.065 3.935
19 C -0.083 4.083
20 C -0.032 4.032
21 C -0.171 4.171
22 C 0.098 3.902
23 N -0.493 5.493
24 C 0.097 3.903
25 C -0.169 4.169
26 C 0.056 3.944
27 C 0.067 3.933
28 C -0.222 4.222
29 H 0.283 0.717
30 H 0.099 0.901
31 H 0.119 0.881
32 H 0.049 0.951
33 H 0.083 0.917
34 H 0.076 0.924
35 H 0.038 0.962
36 H 0.074 0.926
37 H 0.034 0.966
38 H 0.080 0.920
39 H 0.087 0.913
40 H 0.134 0.866
41 H 0.154 0.846
42 H 0.154 0.846
43 H 0.135 0.865
44 H 0.041 0.959
45 H 0.079 0.921
46 H 0.043 0.957
47 H 0.095 0.905
48 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.965 -3.366 -7.010 16.865
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.410 5.410
2 C -0.141 4.141
3 Si 0.735 3.265
4 H -0.187 1.187
5 H -0.202 1.202
6 H -0.189 1.189
7 C -0.485 4.485
8 H 0.099 0.901
9 C 0.129 3.871
10 C -0.307 4.307
11 C -0.037 4.037
12 N -0.323 5.323
13 C 0.065 3.935
14 N -0.198 5.198
15 C -0.051 4.051
16 C -0.072 4.072
17 N -0.265 5.265
18 C -0.064 4.064
19 C -0.120 4.120
20 C -0.041 4.041
21 C -0.190 4.190
22 C -0.059 4.059
23 N -0.202 5.202
24 C -0.059 4.059
25 C -0.189 4.189
26 C -0.072 4.072
27 C -0.060 4.060
28 C -0.247 4.247
29 H 0.094 0.906
30 H 0.117 0.883
31 H 0.136 0.864
32 H 0.067 0.933
33 H 0.101 0.899
34 H 0.094 0.906
35 H 0.057 0.943
36 H 0.092 0.908
37 H 0.053 0.947
38 H 0.098 0.902
39 H 0.105 0.895
40 H 0.152 0.848
41 H 0.172 0.828
42 H 0.172 0.828
43 H 0.153 0.847
44 H 0.060 0.940
45 H 0.097 0.903
46 H 0.061 0.939
47 H 0.113 0.887
48 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges -16.394 -3.997 -7.774 18.578
hybrid contribution 1.656 1.588 0.752 2.415
sum -14.737 -2.409 -7.022 16.501
Atomic orbital electron populations
1.69765 1.07702 1.29529 1.33960 1.25945 0.94775 1.01462 0.91873
0.86319 0.80176 0.79887 0.80105 1.18697 1.20204 1.18899 1.19561
0.97884 0.90811 1.40229 0.90115 1.17696 0.90212 0.92178 0.87013
1.21575 1.05174 0.94008 1.09934 1.21335 0.91471 0.96696 0.94238
1.67166 1.17076 1.28509 1.19559 1.19372 0.91961 0.90309 0.91845
1.59467 1.04311 1.11721 1.44348 1.21828 0.94851 0.89725 0.98704
1.22273 0.91369 0.96971 0.96546 1.62169 1.05138 1.11649 1.47497
1.21988 0.89762 1.00648 0.93978 1.20695 0.90700 1.02730 0.97918
1.20365 0.95611 0.93295 0.94802 1.22117 0.99209 0.99870 0.97841
1.22760 0.90300 0.95970 0.96834 1.67674 1.31215 1.01601 1.19722
1.22766 0.95600 0.96029 0.91539 1.22112 0.95757 0.99537 1.01519
1.22267 0.96649 0.89081 0.99161 1.22225 0.89474 0.98981 0.95362
1.21626 1.01473 0.96338 1.05276 0.90643 0.88273 0.86385 0.93262
0.89862 0.90610 0.94337 0.90760 0.94729 0.90185 0.89455 0.84794
0.82848 0.82850 0.84663 0.94044 0.90258 0.93860 0.88694 0.85316
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.78 -19.13 10.91 55.55 0.61 -18.52 16
2 C 0.08 1.90 5.20 -17.35 -0.09 1.81 16
3 Si 0.91 17.90 29.59 -169.99 -5.03 12.87 16
4 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16
5 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16
6 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16
7 C -0.45 -11.65 9.12 -37.65 -0.34 -11.99 16
8 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16
9 C 0.14 3.61 5.61 -106.55 -0.60 3.01 16
10 C -0.28 -6.86 9.85 -39.07 -0.38 -7.25 16
11 C 0.12 2.67 11.10 -18.04 -0.20 2.47 16
12 N -0.60 -14.34 8.68 -12.82 -0.11 -14.45 16
13 C 0.29 6.91 6.40 -154.98 -0.99 5.92 16
14 N -0.48 -9.69 4.73 -173.10 -0.82 -10.51 16
15 C 0.08 1.36 4.78 -3.77 -0.02 1.35 16
16 C 0.06 0.79 5.61 -3.76 -0.02 0.77 16
17 N -0.54 -7.11 4.71 -234.46 -1.10 -8.21 16
18 C 0.06 0.67 4.94 -3.82 -0.02 0.65 16
19 C -0.08 -0.75 5.33 -27.88 -0.15 -0.90 16
20 C -0.03 -0.29 5.17 -104.31 -0.54 -0.83 16
21 C -0.17 -1.47 9.82 -39.44 -0.39 -1.85 16
22 C 0.10 0.88 11.18 -17.55 -0.20 0.68 16
23 N -0.49 -5.13 10.36 -13.25 -0.14 -5.27 16
24 C 0.10 0.85 11.18 -17.55 -0.20 0.66 16
25 C -0.17 -1.41 9.82 -39.44 -0.39 -1.80 16
26 C 0.06 0.80 5.41 -3.77 -0.02 0.78 16
27 C 0.07 1.21 5.37 -3.76 -0.02 1.19 16
28 C -0.22 -5.69 7.90 -38.44 -0.30 -5.99 16
29 H 0.28 6.25 8.29 -40.82 -0.34 5.91 16
30 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16
31 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16
32 H 0.05 0.95 8.05 -51.93 -0.42 0.53 16
33 H 0.08 1.54 7.82 -51.93 -0.41 1.13 16
34 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16
35 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16
36 H 0.07 0.73 8.03 -51.93 -0.42 0.31 16
37 H 0.03 0.37 8.12 -51.92 -0.42 -0.05 16
38 H 0.08 0.73 6.46 -51.93 -0.34 0.39 16
39 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16
40 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16
41 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16
42 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16
43 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16
44 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16
45 H 0.08 0.97 6.34 -51.93 -0.33 0.64 16
46 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16
47 H 0.09 1.87 6.80 -51.93 -0.35 1.51 16
48 H 0.13 3.37 5.32 -52.49 -0.28 3.09 16
LS Contribution 386.18 15.07 5.82 5.82
Total: -1.00 -28.77 386.18 -12.80 -41.57
By element:
Atomic # 1 Polarization: 15.20 SS G_CDS: -7.15 Total: 8.04 kcal
Atomic # 6 Polarization: -6.47 SS G_CDS: -4.87 Total: -11.34 kcal
Atomic # 7 Polarization: -55.40 SS G_CDS: -1.57 Total: -56.96 kcal
Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal
Total LS contribution 5.82 Total: 5.82 kcal
Total: -28.77 -12.80 -41.57 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001165059988.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 119.694 kcal
(2) G-P(sol) polarization free energy of solvation -28.773 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.921 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.796 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.569 kcal
(6) G-S(sol) free energy of system = (1) + (5) 78.125 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds